Wall clock time and date at job start Wed Apr 1 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 119.99985 * 2 1 4 4 H 1.48506 * 109.47063 * 239.99788 * 3 2 1 5 5 H 1.48500 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47368 * 120.00056 * 3 2 1 7 7 C 1.38651 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00135 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00330 * 185.08051 * 9 7 2 11 11 C 1.38902 * 120.06544 * 354.17370 * 10 9 7 12 12 C 1.38077 * 119.92692 * 180.02562 * 11 10 9 13 13 C 1.38322 * 120.07214 * 0.02562 * 12 11 10 14 14 C 1.38277 * 120.13788 * 359.67954 * 13 12 11 15 15 C 1.50701 * 119.96832 * 180.32239 * 14 13 12 16 16 N 1.46502 * 109.47061 * 270.28014 * 15 14 13 17 17 C 1.34775 * 119.99796 * 179.97438 * 16 15 14 18 18 O 1.21583 * 120.00052 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99748 * 179.97438 * 17 16 15 20 20 C 1.46505 * 119.99757 * 180.02562 * 19 17 16 21 21 H 1.08998 * 109.62938 * 40.77778 * 20 19 17 22 22 C 1.53065 * 109.63076 * 161.17202 * 20 19 17 23 23 C 1.51793 * 110.74247 * 34.78759 * 22 20 19 24 24 C 1.51774 * 113.81542 * 66.80794 * 23 22 20 25 25 C 1.52989 * 110.88267 * 292.99814 * 24 23 22 26 26 N 1.47195 * 108.66605 * 86.46031 * 25 24 23 27 27 C 1.33700 * 120.50921 * 287.87937 * 26 25 24 28 28 O 1.21276 * 120.11247 * 180.29439 * 27 26 25 29 29 C 1.38122 * 120.06675 * 0.60314 * 14 13 12 30 30 H 0.97000 * 119.99851 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.03705 * 359.97438 * 11 10 9 32 32 H 1.08007 * 119.96133 * 180.02562 * 12 11 10 33 33 H 1.08008 * 119.92886 * 180.02562 * 13 12 11 34 34 H 1.09000 * 109.46814 * 30.27609 * 15 14 13 35 35 H 1.09000 * 109.47354 * 150.27769 * 15 14 13 36 36 H 0.96999 * 119.99802 * 359.97438 * 16 15 14 37 37 H 0.96995 * 120.00133 * 359.97438 * 19 17 16 38 38 H 1.09001 * 109.21840 * 155.11214 * 22 20 19 39 39 H 1.08999 * 109.22235 * 274.50353 * 22 20 19 40 40 H 1.09006 * 108.61268 * 187.92438 * 23 22 20 41 41 H 1.09000 * 108.61797 * 305.82591 * 23 22 20 42 42 H 1.08998 * 109.19557 * 53.35444 * 24 23 22 43 43 H 1.08994 * 109.19836 * 172.68460 * 24 23 22 44 44 H 1.08995 * 109.60820 * 206.22202 * 25 24 23 45 45 H 1.09009 * 109.59849 * 326.54786 * 25 24 23 46 46 H 0.97000 * 119.78622 * 108.04336 * 26 25 24 47 47 H 1.08001 * 120.03215 * 179.69964 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0698 -3.5045 0.1092 11 6 3.4572 -3.4400 0.0900 12 6 4.2022 -4.5974 0.1991 13 6 3.5684 -5.8202 0.3268 14 6 2.1875 -5.8871 0.3524 15 6 1.5010 -7.2207 0.4990 16 7 1.2660 -7.7973 -0.8271 17 6 0.6606 -8.9959 -0.9431 18 8 0.3100 -9.5987 0.0528 19 7 0.4440 -9.5262 -2.1631 20 6 -0.2145 -10.8288 -2.2891 21 1 -1.0335 -10.8958 -1.5730 22 6 -0.7590 -10.9943 -3.7101 23 6 0.1600 -10.3294 -4.7188 24 6 1.5174 -10.9967 -4.8441 25 6 2.3282 -10.8292 -3.5576 26 7 1.9757 -11.9192 -2.6333 27 6 0.7866 -11.9330 -2.0222 28 8 0.5056 -12.8317 -1.2580 29 6 1.4365 -4.7335 0.2378 30 1 -0.4850 0.8401 0.0004 31 1 3.9527 -2.4857 -0.0109 32 1 5.2810 -4.5479 0.1847 33 1 4.1534 -6.7241 0.4124 34 1 2.1324 -7.8923 1.0805 35 1 0.5479 -7.0845 1.0100 36 1 1.5462 -7.3165 -1.6216 37 1 0.7235 -9.0451 -2.9576 38 1 -0.8385 -12.0563 -3.9424 39 1 -1.7473 -10.5387 -3.7710 40 1 -0.3260 -10.3435 -5.6944 41 1 0.3107 -9.2918 -4.4211 42 1 1.3775 -12.0590 -5.0438 43 1 2.0635 -10.5453 -5.6724 44 1 3.3927 -10.8746 -3.7876 45 1 2.0936 -9.8681 -3.1000 46 1 2.6114 -12.6320 -2.4641 47 1 0.3580 -4.7870 0.2529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113384238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:03 Heat of formation + Delta-G solvation = -51.493952 kcal Electronic energy + Delta-G solvation = -30126.982143 eV Core-core repulsion = 25890.069323 eV Total energy + Delta-G solvation = -4236.912820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31875 -39.55417 -38.99982 -37.40078 -36.83076 -34.92681 -34.46590 -33.31069 -32.37002 -31.22639 -30.21012 -29.12742 -26.76434 -25.75968 -25.01178 -24.45135 -21.89681 -21.71340 -20.94145 -20.76548 -20.05375 -18.86513 -17.70514 -17.62382 -17.17624 -16.96875 -15.97775 -15.64048 -15.43433 -15.17071 -14.88522 -14.81909 -14.51009 -14.41846 -14.33182 -14.10813 -13.80771 -13.65872 -13.49621 -13.09714 -12.85322 -12.76286 -12.43085 -12.40692 -12.18752 -11.71457 -11.41995 -11.37395 -11.31891 -11.26827 -10.95407 -10.86214 -10.74490 -10.52351 -10.44694 -10.25518 -9.47052 -9.45126 -9.21351 -8.92280 -8.83628 -8.29547 -7.36941 -6.52216 -4.11973 1.78682 2.20893 2.28512 2.81259 2.96465 3.07905 3.09529 3.12278 3.18940 3.89734 4.05501 4.14518 4.17847 4.30089 4.35841 4.51046 4.59953 4.83710 4.89443 4.99634 5.01926 5.03965 5.23154 5.27024 5.30491 5.42790 5.50343 5.51141 5.57528 5.72806 5.73417 5.81413 5.88443 6.03538 6.09807 6.21331 6.46618 6.50429 6.52685 6.73289 6.77969 6.95800 6.97771 7.15318 7.23459 7.31997 7.66786 7.88266 7.91706 8.00646 8.51017 8.92971 9.61242 10.65402 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.002046 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.905794 B =13682.623729 C =13967.127407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.073 4.073 15 C 0.186 3.814 16 N -0.733 5.733 17 C 0.697 3.303 18 O -0.580 6.580 19 N -0.742 5.742 20 C 0.153 3.847 21 H 0.120 0.880 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.143 4.143 25 C 0.092 3.908 26 N -0.721 5.721 27 C 0.514 3.486 28 O -0.538 6.538 29 C -0.170 4.170 30 H 0.271 0.729 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.398 0.602 37 H 0.401 0.599 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.398 0.602 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -18.323 -12.313 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.073 4.073 15 C 0.063 3.937 16 N -0.388 5.388 17 C 0.397 3.603 18 O -0.457 6.457 19 N -0.406 5.406 20 C 0.044 3.956 21 H 0.138 0.862 22 C -0.162 4.162 23 C -0.165 4.165 24 C -0.182 4.182 25 C -0.033 4.033 26 N -0.373 5.373 27 C 0.298 3.702 28 O -0.414 6.414 29 C -0.190 4.190 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.243 0.757 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.234 0.766 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.528 -18.949 -11.010 22.197 hybrid contribution 1.183 1.183 -0.738 1.828 sum 4.711 -17.766 -11.748 21.814 Atomic orbital electron populations 1.70023 1.05981 1.27919 1.45604 1.25293 0.95845 0.98864 0.96425 0.85781 0.78723 0.79728 0.79210 1.19488 1.20231 1.19451 1.21271 0.91760 0.80767 1.53225 0.89091 1.83981 1.34268 1.11405 1.78243 1.19326 0.90253 0.88082 0.92724 1.21245 0.93853 0.99099 1.10275 1.20745 0.98556 0.92256 0.97914 1.20478 0.93348 0.97106 1.10459 1.19266 0.93462 0.92819 1.01797 1.20026 1.00044 0.90862 0.82749 1.45252 1.63906 1.19543 1.10125 1.16051 0.79101 0.81424 0.83684 1.90986 1.56753 1.62030 1.35933 1.45743 1.65957 1.21346 1.07601 1.21211 0.94396 0.80294 0.99736 0.86221 1.21596 1.00105 1.02927 0.91540 1.21171 0.95636 0.99833 0.99905 1.21868 0.96005 1.02354 0.97954 1.22148 0.99899 0.91813 0.89427 1.45906 1.17425 1.27496 1.46519 1.20984 0.83180 0.86968 0.79036 1.90761 1.77327 1.37984 1.35287 1.20093 0.99464 0.89859 1.09568 0.91863 0.85483 0.87311 0.87536 0.91057 0.90870 0.76810 0.75742 0.89956 0.89484 0.90553 0.91611 0.90897 0.90134 0.89606 0.89423 0.76647 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.59 9.49 30.88 0.29 -10.30 16 8 H 0.09 2.24 5.21 -52.49 -0.27 1.97 16 9 O -0.18 -4.80 9.76 0.05 0.00 -4.80 16 10 C 0.15 3.40 6.65 -39.11 -0.26 3.14 16 11 C -0.23 -4.55 9.17 -39.39 -0.36 -4.91 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -3.03 9.70 -39.54 -0.38 -3.42 16 14 C -0.07 -1.18 5.25 -104.65 -0.55 -1.73 16 15 C 0.19 2.68 5.80 -5.19 -0.03 2.65 16 16 N -0.73 -8.99 5.55 -66.41 -0.37 -9.36 16 17 C 0.70 9.31 8.45 -86.92 -0.73 8.58 16 18 O -0.58 -10.49 16.06 5.29 0.09 -10.41 16 19 N -0.74 -6.82 3.17 -59.43 -0.19 -7.01 16 20 C 0.15 1.49 2.68 -68.69 -0.18 1.30 16 21 H 0.12 1.43 7.76 -51.93 -0.40 1.03 16 22 C -0.12 -0.73 5.57 -27.31 -0.15 -0.88 16 23 C -0.13 -0.52 5.20 -27.97 -0.15 -0.66 16 24 C -0.14 -0.54 5.74 -27.36 -0.16 -0.70 16 25 C 0.09 0.47 6.42 -3.67 -0.02 0.45 16 26 N -0.72 -5.91 5.28 -59.82 -0.32 -6.23 16 27 C 0.51 6.07 6.66 -11.11 -0.07 6.00 16 28 O -0.54 -8.86 17.92 5.56 0.10 -8.76 16 29 C -0.17 -3.32 9.65 -39.39 -0.38 -3.70 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 32 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.40 4.07 8.48 -40.82 -0.35 3.72 16 37 H 0.40 2.52 4.25 -40.82 -0.17 2.34 16 38 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.24 5.74 -51.93 -0.30 -0.06 16 42 H 0.07 0.32 8.05 -51.93 -0.42 -0.10 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.50 4.47 -51.92 -0.23 0.27 16 46 H 0.40 2.98 8.91 -40.82 -0.36 2.61 16 47 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -35.52 381.84 -8.98 -44.50 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.15 Total: 10.20 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.63 Total: -4.86 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.11 Total: -46.42 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.19 Total: -23.97 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.52 -8.98 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113384238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.999 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds