Wall clock time and date at job start Wed Apr 1 2020 04:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46953 * 270.00495 * 3 2 1 5 5 H 1.48495 * 109.46815 * 30.00138 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00366 * 3 2 1 7 7 C 1.37875 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00355 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47394 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99865 * 269.99821 * 10 9 7 12 12 O 1.21292 * 119.99791 * 184.73687 * 11 10 9 13 13 C 1.50695 * 120.00262 * 4.73543 * 11 10 9 14 14 C 1.52998 * 109.47227 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46901 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00264 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.46501 * 120.00084 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47049 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47422 * 179.97438 * 19 18 17 21 21 N 1.34768 * 120.00252 * 179.97438 * 20 19 18 22 22 O 1.21282 * 119.99273 * 0.02562 * 20 19 18 23 23 C 1.39932 * 120.00082 * 89.99699 * 10 9 7 24 24 C 1.38867 * 120.06969 * 247.89732 * 23 10 9 25 25 C 1.38113 * 119.93011 * 179.97438 * 24 23 10 26 26 C 1.38283 * 120.06773 * 359.97438 * 25 24 23 27 27 C 1.38283 * 120.14290 * 0.04580 * 26 25 24 28 28 C 1.38113 * 120.06820 * 359.94780 * 27 26 25 29 29 H 0.96993 * 119.99919 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47135 * 59.99624 * 9 7 2 31 31 H 1.09009 * 109.46819 * 299.99805 * 9 7 2 32 32 H 1.08999 * 109.47279 * 300.00614 * 13 11 10 33 33 H 1.09000 * 109.46739 * 59.99911 * 13 11 10 34 34 H 1.09001 * 109.47096 * 299.99779 * 14 13 11 35 35 H 1.09000 * 109.47375 * 60.00250 * 14 13 11 36 36 H 0.96997 * 119.99701 * 0.02562 * 17 15 14 37 37 H 1.09001 * 109.46648 * 299.99595 * 18 17 15 38 38 H 1.08999 * 109.47653 * 59.99887 * 18 17 15 39 39 H 1.08999 * 109.47452 * 300.00038 * 19 18 17 40 40 H 1.09008 * 109.47180 * 60.00080 * 19 18 17 41 41 H 0.96998 * 120.00494 * 0.02562 * 21 20 19 42 42 H 0.97002 * 119.99883 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.03470 * 359.70272 * 24 23 10 44 44 H 1.08001 * 119.96462 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.92786 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.96455 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.03372 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 4.2241 -3.2109 1.1671 12 8 4.7091 -4.3226 1.1688 13 6 3.8722 -2.5403 2.4700 14 6 4.2252 -3.4692 3.6333 15 6 3.8727 -2.7989 4.9361 16 8 3.3865 -1.6878 4.9344 17 7 4.0968 -3.4345 6.1033 18 6 3.7536 -2.7830 7.3698 19 6 4.1056 -3.7124 8.5331 20 6 3.7532 -3.0421 9.8360 21 7 3.9764 -3.6781 11.0031 22 8 3.2678 -1.9307 9.8342 23 6 4.2335 -3.2347 -1.2120 24 6 3.4304 -4.3030 -1.5889 25 6 3.6632 -4.9514 -2.7859 26 6 4.6945 -4.5375 -3.6090 27 6 5.4963 -3.4743 -3.2363 28 6 5.2685 -2.8217 -2.0406 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6809 0.8905 31 1 3.8752 -0.6797 -0.8896 32 1 4.4342 -1.6112 2.5638 33 1 2.8044 -2.3225 2.4896 34 1 3.6634 -4.3986 3.5396 35 1 5.2932 -3.6867 3.6135 36 1 4.4853 -4.3232 6.1047 37 1 4.3152 -1.8536 7.4641 38 1 2.6856 -2.5659 7.3891 39 1 3.5439 -4.6417 8.4386 40 1 5.1736 -3.9299 8.5141 41 1 4.3643 -4.5671 11.0045 42 1 3.7492 -3.2468 11.8417 43 1 2.6273 -4.6293 -0.9447 44 1 3.0392 -5.7826 -3.0795 45 1 4.8748 -5.0465 -4.5443 46 1 6.3012 -3.1538 -3.8810 47 1 5.8949 -1.9911 -1.7502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173018537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:45 Heat of formation + Delta-G solvation = -88.637517 kcal Electronic energy + Delta-G solvation = -29508.714544 eV Core-core repulsion = 25270.191058 eV Total energy + Delta-G solvation = -4238.523486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18278 -39.92989 -39.30152 -37.96438 -35.26863 -35.13749 -34.10000 -32.75847 -32.44238 -30.99699 -30.54702 -29.70058 -27.65673 -25.91614 -23.82082 -22.79801 -22.04069 -21.70421 -20.98883 -20.19801 -18.67354 -17.85904 -17.25479 -17.24326 -17.05053 -16.65158 -16.32315 -15.81977 -15.58569 -15.48443 -15.42744 -14.90904 -14.23407 -14.13883 -14.05664 -13.94825 -13.53108 -13.40112 -13.04673 -12.75444 -12.52452 -12.44880 -12.22716 -12.18423 -12.02210 -11.73584 -11.53498 -11.32608 -11.08394 -10.86140 -10.73146 -10.62719 -10.44442 -10.26340 -10.14112 -9.70727 -9.62512 -9.29701 -9.11787 -8.67220 -8.63384 -8.54129 -7.70809 -6.16872 -4.18910 1.70722 1.79973 2.22290 2.78568 2.79938 3.19289 3.24456 3.31896 3.32967 3.38867 3.74988 4.17923 4.27810 4.32594 4.62668 4.63887 4.84388 5.00941 5.13837 5.23518 5.27127 5.30160 5.37986 5.44306 5.48867 5.61788 5.78263 5.82579 5.87536 5.94046 5.98322 6.18916 6.32004 6.33990 6.37280 6.45753 6.57027 6.62927 6.73635 6.84336 6.85188 6.96371 7.12765 7.44571 7.45458 7.56228 7.82816 7.98790 8.32188 8.38731 8.78040 8.88012 9.41667 10.95722 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.002506 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.634269 B =11172.566122 C =13215.732269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.209 3.791 10 N -0.556 5.556 11 C 0.525 3.475 12 O -0.561 6.561 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.512 3.488 16 O -0.525 6.525 17 N -0.740 5.740 18 C 0.132 3.868 19 C -0.155 4.155 20 C 0.520 3.480 21 N -0.858 5.858 22 O -0.534 6.534 23 C 0.173 3.827 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.134 4.134 27 C -0.115 4.115 28 C -0.127 4.127 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.399 0.601 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.402 0.598 42 H 0.402 0.598 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.398 -12.251 12.269 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.697 3.303 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.089 3.911 10 N -0.283 5.283 11 C 0.316 3.684 12 O -0.441 6.441 13 C -0.162 4.162 14 C -0.161 4.161 15 C 0.299 3.701 16 O -0.399 6.399 17 N -0.394 5.394 18 C 0.008 3.992 19 C -0.195 4.195 20 C 0.304 3.696 21 N -0.422 5.422 22 O -0.410 6.410 23 C 0.082 3.918 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.153 4.153 27 C -0.133 4.133 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.233 0.767 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.230 0.770 42 H 0.233 0.767 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.795 -11.099 12.093 20.213 hybrid contribution 0.448 0.294 0.403 0.670 sum 12.243 -10.805 12.495 20.562 Atomic orbital electron populations 1.69874 1.06217 1.27263 1.49191 1.24824 0.94733 0.98861 0.94004 0.86932 0.80662 0.84056 0.78680 1.19999 1.20712 1.18704 1.21250 0.88634 0.95115 1.52901 0.90316 1.19989 0.96391 0.76689 0.98038 1.45632 1.63748 1.16019 1.02862 1.20583 0.76897 0.85457 0.85493 1.90625 1.45301 1.20250 1.87903 1.21374 1.06444 0.98839 0.89519 1.21374 1.04001 1.00088 0.90644 1.20852 0.77735 0.86204 0.85355 1.90784 1.42262 1.19442 1.87432 1.45971 1.66703 1.20960 1.05760 1.20983 1.02350 0.95198 0.80654 1.21822 1.04285 1.00805 0.92589 1.20434 0.77408 0.85877 0.85872 1.43872 1.67724 1.21921 1.08665 1.90828 1.43019 1.19543 1.87605 1.17572 0.93716 0.93381 0.87104 1.21259 0.98356 0.96048 0.96478 1.20963 0.97999 0.99828 0.94334 1.21025 0.96599 0.97920 0.99709 1.20889 0.99804 0.96424 0.96228 1.21186 0.97151 1.00979 0.95393 0.92311 0.94029 0.95033 0.88457 0.86322 0.88231 0.88519 0.76703 0.90626 0.90508 0.87935 0.88014 0.77018 0.76687 0.86097 0.86209 0.86483 0.86264 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.54 -14.58 9.71 -34.44 -0.33 -14.92 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.21 4.76 3.95 -5.19 -0.02 4.74 16 10 N -0.56 -11.73 2.51 -114.74 -0.29 -12.02 16 11 C 0.53 10.54 7.53 -10.99 -0.08 10.45 16 12 O -0.56 -11.75 15.74 5.55 0.09 -11.67 16 13 C -0.12 -2.20 3.65 -27.89 -0.10 -2.30 16 14 C -0.12 -1.69 4.99 -27.88 -0.14 -1.83 16 15 C 0.51 7.47 7.83 -10.99 -0.09 7.38 16 16 O -0.52 -10.26 15.98 5.56 0.09 -10.17 16 17 N -0.74 -7.50 5.56 -60.29 -0.33 -7.84 16 18 C 0.13 1.39 4.96 -4.04 -0.02 1.37 16 19 C -0.15 -0.89 5.81 -27.88 -0.16 -1.05 16 20 C 0.52 4.22 8.10 -10.99 -0.09 4.13 16 21 N -0.86 -3.39 8.87 31.22 0.28 -3.12 16 22 O -0.53 -7.26 16.82 5.56 0.09 -7.17 16 23 C 0.17 3.47 4.75 -83.69 -0.40 3.07 16 24 C -0.10 -1.94 9.55 -39.39 -0.38 -2.32 16 25 C -0.11 -1.78 10.04 -39.61 -0.40 -2.17 16 26 C -0.13 -1.92 10.04 -39.55 -0.40 -2.32 16 27 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 28 C -0.13 -2.22 9.69 -39.39 -0.38 -2.60 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.04 0.93 5.53 -51.93 -0.29 0.64 16 31 H 0.03 0.71 7.29 -51.92 -0.38 0.33 16 32 H 0.10 1.74 7.22 -51.93 -0.37 1.37 16 33 H 0.12 2.44 7.87 -51.93 -0.41 2.03 16 34 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.40 2.54 8.47 -40.82 -0.35 2.20 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.34 8.14 -51.92 -0.42 -0.09 16 41 H 0.40 0.25 8.83 -40.82 -0.36 -0.11 16 42 H 0.40 1.44 8.93 -40.82 -0.36 1.08 16 43 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -38.02 403.24 -8.13 -46.15 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.75 Total: 7.77 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.48 Total: 1.66 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.43 Total: -48.72 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: 0.27 Total: -29.00 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.02 -8.13 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173018537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.487 kcal (2) G-P(sol) polarization free energy of solvation -38.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds