Wall clock time and date at job start Wed Apr 1 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46953 * 270.00495 * 3 2 1 5 5 H 1.48495 * 109.46815 * 30.00138 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00366 * 3 2 1 7 7 C 1.37875 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00355 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47394 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99865 * 269.99821 * 10 9 7 12 12 O 1.21292 * 119.99791 * 184.73687 * 11 10 9 13 13 C 1.50695 * 120.00262 * 4.73543 * 11 10 9 14 14 C 1.52998 * 109.47227 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46901 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00264 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.46501 * 120.00084 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47049 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47422 * 179.97438 * 19 18 17 21 21 N 1.34768 * 120.00252 * 179.97438 * 20 19 18 22 22 O 1.21282 * 119.99273 * 0.02562 * 20 19 18 23 23 C 1.39932 * 120.00082 * 89.99699 * 10 9 7 24 24 C 1.38867 * 120.06969 * 247.89732 * 23 10 9 25 25 C 1.38113 * 119.93011 * 179.97438 * 24 23 10 26 26 C 1.38283 * 120.06773 * 359.97438 * 25 24 23 27 27 C 1.38283 * 120.14290 * 0.04580 * 26 25 24 28 28 C 1.38113 * 120.06820 * 359.94780 * 27 26 25 29 29 H 0.96993 * 119.99919 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47135 * 59.99624 * 9 7 2 31 31 H 1.09009 * 109.46819 * 299.99805 * 9 7 2 32 32 H 1.08999 * 109.47279 * 300.00614 * 13 11 10 33 33 H 1.09000 * 109.46739 * 59.99911 * 13 11 10 34 34 H 1.09001 * 109.47096 * 299.99779 * 14 13 11 35 35 H 1.09000 * 109.47375 * 60.00250 * 14 13 11 36 36 H 0.96997 * 119.99701 * 0.02562 * 17 15 14 37 37 H 1.09001 * 109.46648 * 299.99595 * 18 17 15 38 38 H 1.08999 * 109.47653 * 59.99887 * 18 17 15 39 39 H 1.08999 * 109.47452 * 300.00038 * 19 18 17 40 40 H 1.09008 * 109.47180 * 60.00080 * 19 18 17 41 41 H 0.96998 * 120.00494 * 0.02562 * 21 20 19 42 42 H 0.97002 * 119.99883 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.03470 * 359.70272 * 24 23 10 44 44 H 1.08001 * 119.96462 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.92786 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.96455 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.03372 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 4.2241 -3.2109 1.1671 12 8 4.7091 -4.3226 1.1688 13 6 3.8722 -2.5403 2.4700 14 6 4.2252 -3.4692 3.6333 15 6 3.8727 -2.7989 4.9361 16 8 3.3865 -1.6878 4.9344 17 7 4.0968 -3.4345 6.1033 18 6 3.7536 -2.7830 7.3698 19 6 4.1056 -3.7124 8.5331 20 6 3.7532 -3.0421 9.8360 21 7 3.9764 -3.6781 11.0031 22 8 3.2678 -1.9307 9.8342 23 6 4.2335 -3.2347 -1.2120 24 6 3.4304 -4.3030 -1.5889 25 6 3.6632 -4.9514 -2.7859 26 6 4.6945 -4.5375 -3.6090 27 6 5.4963 -3.4743 -3.2363 28 6 5.2685 -2.8217 -2.0406 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6809 0.8905 31 1 3.8752 -0.6797 -0.8896 32 1 4.4342 -1.6112 2.5638 33 1 2.8044 -2.3225 2.4896 34 1 3.6634 -4.3986 3.5396 35 1 5.2932 -3.6867 3.6135 36 1 4.4853 -4.3232 6.1047 37 1 4.3152 -1.8536 7.4641 38 1 2.6856 -2.5659 7.3891 39 1 3.5439 -4.6417 8.4386 40 1 5.1736 -3.9299 8.5141 41 1 4.3643 -4.5671 11.0045 42 1 3.7492 -3.2468 11.8417 43 1 2.6273 -4.6293 -0.9447 44 1 3.0392 -5.7826 -3.0795 45 1 4.8748 -5.0465 -4.5443 46 1 6.3012 -3.1538 -3.8810 47 1 5.8949 -1.9911 -1.7502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173018537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:44 Heat of formation + Delta-G solvation = -119.191487 kcal Electronic energy + Delta-G solvation = -29510.039464 eV Core-core repulsion = 25270.191058 eV Total energy + Delta-G solvation = -4239.848405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.57858 -40.89930 -40.32482 -39.33316 -36.80030 -36.27751 -34.67865 -34.63020 -33.98715 -31.88508 -31.81638 -31.13148 -29.47018 -27.11064 -24.85016 -24.58507 -23.40268 -23.04251 -21.78440 -21.15229 -20.17087 -19.14494 -18.83491 -18.29240 -17.96269 -17.91780 -17.26552 -17.13695 -16.92841 -16.78367 -16.40846 -16.23330 -15.95826 -15.43655 -15.31080 -14.90329 -14.69469 -14.60359 -14.44712 -14.29633 -14.02145 -13.84569 -13.75663 -13.49900 -13.21305 -12.95018 -12.83326 -12.53940 -12.47865 -12.46835 -12.17653 -12.15894 -11.95998 -11.74058 -11.22373 -10.93622 -10.92523 -10.78726 -10.66871 -10.15177 -10.12947 -9.82520 -9.23579 -8.33729 -6.40496 0.39830 0.51427 1.34471 1.38394 1.46253 1.58698 1.60781 1.62546 1.88580 2.23453 2.30920 2.79879 2.88843 3.01091 3.55862 3.66410 3.87425 4.04916 4.06485 4.11157 4.11423 4.17548 4.20593 4.28708 4.45680 4.55525 4.57543 4.59855 4.68352 4.77187 4.83714 4.83869 4.89749 4.96391 5.03470 5.13409 5.36843 5.39454 5.46543 5.59308 5.60664 5.75824 5.89588 6.08048 6.20046 6.44931 6.46041 6.54752 6.63114 7.16083 7.25472 7.27514 7.36275 8.82673 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.002506 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.634269 B =11172.566122 C =13215.732269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.020 3.980 3 Si 0.936 3.064 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.537 4.537 8 H 0.031 0.969 9 C 0.219 3.781 10 N -0.560 5.560 11 C 0.523 3.477 12 O -0.570 6.570 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.512 3.488 16 O -0.583 6.583 17 N -0.712 5.712 18 C 0.132 3.868 19 C -0.139 4.139 20 C 0.514 3.486 21 N -0.834 5.834 22 O -0.601 6.601 23 C 0.131 3.869 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.107 4.107 28 C -0.140 4.140 29 H 0.268 0.732 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.423 0.577 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.421 0.579 42 H 0.406 0.594 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.962 -13.885 11.615 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.575 4.575 8 H 0.049 0.951 9 C 0.099 3.901 10 N -0.287 5.287 11 C 0.314 3.686 12 O -0.450 6.450 13 C -0.158 4.158 14 C -0.149 4.149 15 C 0.299 3.701 16 O -0.462 6.462 17 N -0.366 5.366 18 C 0.007 3.993 19 C -0.179 4.179 20 C 0.299 3.701 21 N -0.398 5.398 22 O -0.482 6.482 23 C 0.041 3.959 24 C -0.154 4.154 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.125 4.125 28 C -0.159 4.159 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.253 0.747 42 H 0.237 0.763 43 H 0.112 0.888 44 H 0.162 0.838 45 H 0.178 0.822 46 H 0.177 0.823 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.427 -12.870 11.480 23.139 hybrid contribution -0.679 0.598 0.579 1.074 sum 14.748 -12.272 12.058 22.661 Atomic orbital electron populations 1.70034 1.08279 1.28337 1.51307 1.25749 0.95513 1.03004 0.93625 0.85878 0.80007 0.78665 0.79592 1.18372 1.21092 1.16256 1.21399 0.90984 0.93270 1.51893 0.95064 1.19739 0.93361 0.78337 0.98706 1.45602 1.63669 1.15456 1.03974 1.20861 0.76552 0.85384 0.85823 1.90592 1.45887 1.20461 1.88081 1.21289 1.04173 0.99923 0.90380 1.21301 1.05717 0.99170 0.88703 1.20959 0.77046 0.85496 0.86598 1.90766 1.45176 1.22066 1.88239 1.45689 1.64974 1.21499 1.04472 1.20900 1.00107 0.95930 0.82342 1.21763 1.07009 1.00127 0.88992 1.20857 0.76553 0.85156 0.87490 1.43699 1.65995 1.22454 1.07685 1.90812 1.46366 1.22530 1.88539 1.17972 0.95746 0.94650 0.87543 1.21292 0.98555 0.97413 0.98101 1.21304 0.98817 1.00029 0.93101 1.21536 0.94870 0.97226 1.00507 1.21386 1.00268 0.95527 0.95298 1.21427 0.96651 1.01712 0.96110 0.92267 0.93086 0.93850 0.88410 0.89742 0.87107 0.85838 0.73907 0.93106 0.93686 0.84659 0.84319 0.74651 0.76263 0.88796 0.83776 0.82236 0.82297 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 2 C 0.02 1.16 5.47 84.65 0.46 1.63 16 3 Si 0.94 43.16 27.47 68.60 1.88 45.04 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 7 C -0.54 -30.46 9.71 25.60 0.25 -30.21 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 C 0.22 10.20 3.95 85.63 0.34 10.54 16 10 N -0.56 -24.34 2.51 -635.30 -1.59 -25.94 16 11 C 0.52 21.57 7.53 87.66 0.66 22.23 16 12 O -0.57 -24.07 15.74 -3.07 -0.05 -24.12 16 13 C -0.12 -4.42 3.65 29.85 0.11 -4.31 16 14 C -0.11 -3.03 4.99 29.85 0.15 -2.88 16 15 C 0.51 15.12 7.83 87.66 0.69 15.80 16 16 O -0.58 -24.05 15.98 -3.03 -0.05 -24.10 16 17 N -0.71 -13.66 5.56 -463.06 -2.57 -16.23 16 18 C 0.13 2.78 4.96 86.38 0.43 3.21 16 19 C -0.14 -1.26 5.81 29.85 0.17 -1.09 16 20 C 0.51 7.83 8.10 87.66 0.71 8.54 16 21 N -0.83 -4.84 8.87 -173.54 -1.54 -6.38 16 22 O -0.60 -17.07 16.82 -3.04 -0.05 -17.12 16 23 C 0.13 5.31 4.75 38.15 0.18 5.49 16 24 C -0.13 -5.26 9.55 22.39 0.21 -5.05 16 25 C -0.11 -3.44 10.04 22.25 0.22 -3.22 16 26 C -0.12 -3.07 10.04 22.29 0.22 -2.84 16 27 C -0.11 -2.76 10.04 22.25 0.22 -2.54 16 28 C -0.14 -4.64 9.69 22.39 0.22 -4.42 16 29 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.05 2.28 5.53 -2.39 -0.01 2.27 16 31 H 0.04 1.93 7.29 -2.38 -0.02 1.91 16 32 H 0.10 3.61 7.22 -2.39 -0.02 3.60 16 33 H 0.08 3.77 7.87 -2.39 -0.02 3.75 16 34 H 0.11 2.85 8.10 -2.39 -0.02 2.83 16 35 H 0.12 2.80 8.10 -2.39 -0.02 2.78 16 36 H 0.42 4.12 8.47 -92.71 -0.79 3.33 16 37 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.14 0.31 8.14 -2.38 -0.02 0.29 16 41 H 0.42 -0.90 8.83 -92.71 -0.82 -1.71 16 42 H 0.41 2.30 8.93 -92.71 -0.83 1.47 16 43 H 0.09 4.03 8.06 -2.91 -0.02 4.01 16 44 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 45 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 46 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 47 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -91.94 403.24 0.12 -91.82 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.46 Total: 24.70 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.25 Total: 10.89 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -5.40 Total: -107.12 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -0.15 Total: -65.33 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Total: -91.94 0.12 -91.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173018537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.375 kcal (2) G-P(sol) polarization free energy of solvation -91.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds