Wall clock time and date at job start Wed Apr 1 2020 04:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00579 * 2 1 4 4 H 1.48504 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46922 * 299.99804 * 3 2 1 6 6 H 1.48496 * 109.47440 * 59.99635 * 3 2 1 7 7 C 1.37881 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47234 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47177 * 179.97438 * 10 9 7 12 12 C 1.35984 * 117.00245 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49239 * 0.02562 * 12 11 10 14 14 C 1.38787 * 118.44520 * 179.97438 * 13 12 11 15 15 C 1.38072 * 119.35994 * 0.02562 * 14 13 12 16 16 N 1.31978 * 120.94894 * 359.71883 * 15 14 13 17 17 C 1.32269 * 121.68527 * 0.56589 * 16 15 14 18 18 N 1.39583 * 119.72596 * 179.70875 * 17 16 15 19 19 C 1.34779 * 119.99742 * 359.73280 * 18 17 16 20 20 O 1.21580 * 120.00523 * 359.97438 * 19 18 17 21 21 N 1.34785 * 120.00088 * 180.02562 * 19 18 17 22 22 C 1.46501 * 120.00212 * 179.97438 * 21 19 18 23 23 H 1.09001 * 110.34467 * 35.82991 * 22 21 19 24 24 C 1.51099 * 110.38453 * 273.54240 * 22 21 19 25 25 C 1.30525 * 111.10506 * 257.62101 * 24 22 21 26 26 C 1.51101 * 111.10317 * 0.25074 * 25 24 22 27 27 H 1.08993 * 110.38575 * 224.50514 * 26 25 24 28 28 C 1.52997 * 110.39069 * 102.12702 * 26 25 24 29 29 O 1.42903 * 109.47137 * 66.45158 * 28 26 25 30 30 C 1.54635 * 110.38375 * 158.23860 * 22 21 19 31 31 H 0.97002 * 119.99068 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47140 * 59.99540 * 9 7 2 33 33 H 1.08999 * 109.46803 * 299.99806 * 9 7 2 34 34 H 1.08992 * 109.47206 * 59.99952 * 10 9 7 35 35 H 1.08999 * 109.47043 * 299.99629 * 10 9 7 36 36 H 1.07997 * 120.77651 * 359.96010 * 13 12 11 37 37 H 1.07998 * 120.32663 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.52851 * 180.02562 * 15 14 13 39 39 H 0.96999 * 120.00258 * 179.73283 * 18 17 16 40 40 H 0.97000 * 119.99659 * 359.97438 * 21 19 18 41 41 H 1.07999 * 124.44641 * 77.64811 * 24 22 21 42 42 H 1.08002 * 124.44516 * 179.97438 * 25 24 22 43 43 H 1.08993 * 109.47309 * 186.45046 * 28 26 25 44 44 H 1.09005 * 109.46941 * 306.45360 * 28 26 25 45 45 H 0.96697 * 114.00391 * 180.02562 * 29 28 26 46 46 H 1.09005 * 111.03380 * 212.20819 * 30 22 21 47 47 H 1.08994 * 111.04240 * 336.14479 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5305 -4.8997 0.0024 12 6 2.2711 -6.0402 0.0030 13 6 3.6576 -5.9796 0.0036 14 6 4.3713 -7.1699 0.0048 15 6 3.6874 -8.3693 0.0048 16 7 2.3679 -8.3983 0.0093 17 6 1.6486 -7.2883 0.0028 18 7 0.2550 -7.3666 0.0017 19 6 -0.3522 -8.5699 0.0019 20 8 0.3137 -9.5870 0.0025 21 7 -1.6980 -8.6456 0.0003 22 6 -2.3581 -9.9535 -0.0001 23 1 -1.7898 -10.6650 0.5990 24 6 -2.5155 -10.4631 -1.4138 25 6 -3.7395 -10.3027 -1.8377 26 6 -4.6010 -9.6537 -0.7795 27 1 -5.5627 -10.1617 -0.7088 28 6 -4.8025 -8.1697 -1.0925 29 8 -5.5749 -8.0355 -2.2873 30 6 -3.8032 -9.8276 0.5356 31 1 -0.4849 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.8710 -3.6041 0.8922 35 1 2.8724 -3.6049 -0.8877 36 1 4.1692 -5.0285 0.0029 37 1 5.4512 -7.1582 0.0057 38 1 4.2400 -9.2972 0.0061 39 1 -0.2764 -6.5552 0.0009 40 1 -2.2293 -7.8341 -0.0005 41 1 -1.7197 -10.9029 -1.9967 42 1 -4.0893 -10.5915 -2.8178 43 1 -5.3270 -7.6918 -0.2652 44 1 -3.8322 -7.6928 -1.2317 45 1 -5.7418 -7.1191 -2.5469 46 1 -4.1048 -10.7321 1.0640 47 1 -3.9091 -8.9502 1.1735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188728492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:26 Heat of formation + Delta-G solvation = -48.736004 kcal Electronic energy + Delta-G solvation = -29768.969950 eV Core-core repulsion = 25532.176723 eV Total energy + Delta-G solvation = -4236.793226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99134 -40.18662 -38.84723 -37.75322 -36.57706 -34.71905 -33.66859 -33.49156 -31.56330 -30.58205 -30.10008 -29.19758 -28.06686 -25.43604 -24.64275 -23.51052 -22.77135 -21.37355 -20.82407 -20.61830 -19.03641 -18.66962 -18.11062 -17.60491 -17.46405 -16.45027 -16.22506 -15.99439 -15.84340 -15.72644 -15.13631 -14.90410 -14.72510 -14.59424 -14.30685 -14.02861 -13.89923 -13.58868 -12.84932 -12.63697 -12.46128 -12.42821 -12.22318 -12.01058 -11.92765 -11.84840 -11.50919 -11.24776 -11.06338 -11.02925 -10.70077 -10.69160 -10.42718 -10.25517 -10.06191 -9.80036 -9.44610 -9.39394 -9.26289 -9.10269 -9.02286 -8.54835 -7.62130 -6.20633 -4.25199 1.28914 1.47956 1.85817 2.61548 3.19974 3.23107 3.27415 3.30363 3.53838 3.76362 3.97296 4.07231 4.18988 4.32027 4.44841 4.67436 4.68681 4.82832 4.97666 4.99719 5.09355 5.10396 5.16614 5.24091 5.28569 5.30594 5.46444 5.49461 5.57717 5.63519 5.84590 5.87276 5.89340 6.06738 6.19905 6.26707 6.37257 6.38784 6.53342 6.56660 6.62265 6.84803 7.31133 7.33886 7.50203 7.62476 7.72924 7.86065 8.12235 8.26965 8.64395 8.80219 9.39902 10.90874 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.002618 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.045738 B =10694.522585 C =13574.330063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.064 3.936 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.077 3.923 16 N -0.441 5.441 17 C 0.347 3.653 18 N -0.662 5.662 19 C 0.697 3.303 20 O -0.533 6.533 21 N -0.736 5.736 22 C 0.184 3.816 23 H 0.097 0.903 24 C -0.173 4.173 25 C -0.136 4.136 26 C -0.073 4.073 27 H 0.088 0.912 28 C 0.086 3.914 29 O -0.572 6.572 30 C -0.126 4.126 31 H 0.263 0.737 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.419 0.581 40 H 0.393 0.607 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.382 0.618 46 H 0.095 0.905 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -18.446 -0.207 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.230 6.230 12 C 0.012 3.988 13 C -0.173 4.173 14 C -0.185 4.185 15 C -0.080 4.080 16 N -0.156 5.156 17 C 0.113 3.887 18 N -0.311 5.311 19 C 0.397 3.603 20 O -0.404 6.404 21 N -0.394 5.394 22 C 0.079 3.921 23 H 0.115 0.885 24 C -0.192 4.192 25 C -0.156 4.156 26 C -0.091 4.091 27 H 0.106 0.894 28 C 0.008 3.992 29 O -0.378 6.378 30 C -0.164 4.164 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.256 0.744 40 H 0.228 0.772 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.229 0.771 46 H 0.113 0.887 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.894 -20.717 -0.140 21.539 hybrid contribution 0.651 3.375 -0.157 3.441 sum -5.243 -17.342 -0.296 18.119 Atomic orbital electron populations 1.69975 1.06107 1.26950 1.49689 1.24981 0.94919 0.99429 0.94793 0.86430 0.80009 0.83179 0.77779 1.19613 1.20796 1.20800 1.20990 0.93116 0.90120 1.52307 0.92279 1.19124 0.94140 0.88967 0.98809 1.23379 0.97227 0.80331 0.99835 1.86091 1.36250 1.12898 1.87741 1.19541 0.91125 0.86966 1.01146 1.21584 0.92160 1.00335 1.03227 1.21879 1.01163 0.92544 1.02890 1.22416 0.88805 0.97852 0.98935 1.67636 1.07715 1.26772 1.13477 1.17482 0.83887 0.86892 1.00389 1.42504 1.04058 1.08929 1.75639 1.15964 0.82028 0.83816 0.78492 1.91020 1.62970 1.32905 1.53530 1.45305 1.04604 1.08845 1.80601 1.20533 0.92720 0.84235 0.94580 0.88465 1.23649 0.97486 1.00475 0.97609 1.23197 0.95149 0.98229 0.98991 1.21078 0.99742 0.94820 0.93508 0.89401 1.22238 0.94493 0.95517 0.86985 1.86449 1.75026 1.32333 1.43966 1.22789 0.93396 1.03827 0.96410 0.92717 0.95403 0.95399 0.92959 0.92964 0.83776 0.84842 0.82671 0.74376 0.77197 0.85525 0.85569 0.93203 0.93531 0.77091 0.88690 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -13.96 9.11 -34.44 -0.31 -14.27 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.30 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.80 9.39 -19.69 -0.18 -5.98 16 12 C 0.06 1.07 6.72 -38.92 -0.26 0.81 16 13 C -0.15 -2.14 9.14 -39.18 -0.36 -2.50 16 14 C -0.16 -2.06 10.10 -39.44 -0.40 -2.46 16 15 C 0.08 1.06 11.17 -17.55 -0.20 0.86 16 16 N -0.44 -7.52 7.87 -12.22 -0.10 -7.62 16 17 C 0.35 5.84 7.45 -154.44 -1.15 4.69 16 18 N -0.66 -9.83 5.40 -15.67 -0.08 -9.92 16 19 C 0.70 10.31 8.52 -86.91 -0.74 9.57 16 20 O -0.53 -9.69 14.30 5.30 0.08 -9.62 16 21 N -0.74 -7.91 5.05 -58.77 -0.30 -8.21 16 22 C 0.18 1.79 3.19 -68.03 -0.22 1.57 16 23 H 0.10 1.07 7.65 -51.93 -0.40 0.68 16 24 C -0.17 -1.75 10.39 -35.70 -0.37 -2.13 16 25 C -0.14 -1.24 9.92 -35.70 -0.35 -1.60 16 26 C -0.07 -0.56 3.19 -90.63 -0.29 -0.85 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 C 0.09 0.65 6.36 37.16 0.24 0.88 16 29 O -0.57 -4.93 13.48 -35.23 -0.47 -5.40 16 30 C -0.13 -0.86 6.33 -24.92 -0.16 -1.02 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 35 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 36 H 0.14 1.95 6.44 -52.49 -0.34 1.61 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.42 5.49 8.06 -40.82 -0.33 5.16 16 40 H 0.39 3.38 7.19 -40.82 -0.29 3.09 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 0.36 6.70 -51.93 -0.35 0.01 16 45 H 0.38 1.85 9.12 45.56 0.42 2.27 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.50 7.78 -51.93 -0.40 0.09 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -34.05 394.04 -9.89 -43.95 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.84 Total: 8.81 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -4.64 Total: -2.90 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.26 Total: -50.28 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.58 Total: -21.00 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.05 -9.89 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188728492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.791 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds