Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00579 * 2 1 4 4 H 1.48504 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46922 * 299.99804 * 3 2 1 6 6 H 1.48496 * 109.47440 * 59.99635 * 3 2 1 7 7 C 1.37881 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47234 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47177 * 179.97438 * 10 9 7 12 12 C 1.35984 * 117.00245 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49239 * 0.02562 * 12 11 10 14 14 C 1.38787 * 118.44520 * 179.97438 * 13 12 11 15 15 C 1.38072 * 119.35994 * 0.02562 * 14 13 12 16 16 N 1.31978 * 120.94894 * 359.71883 * 15 14 13 17 17 C 1.32269 * 121.68527 * 0.56589 * 16 15 14 18 18 N 1.39583 * 119.72596 * 179.70875 * 17 16 15 19 19 C 1.34779 * 119.99742 * 359.73280 * 18 17 16 20 20 O 1.21580 * 120.00523 * 359.97438 * 19 18 17 21 21 N 1.34785 * 120.00088 * 180.02562 * 19 18 17 22 22 C 1.46501 * 120.00212 * 179.97438 * 21 19 18 23 23 H 1.09001 * 110.34467 * 35.82991 * 22 21 19 24 24 C 1.51099 * 110.38453 * 273.54240 * 22 21 19 25 25 C 1.30525 * 111.10506 * 257.62101 * 24 22 21 26 26 C 1.51101 * 111.10317 * 0.25074 * 25 24 22 27 27 H 1.08993 * 110.38575 * 224.50514 * 26 25 24 28 28 C 1.52997 * 110.39069 * 102.12702 * 26 25 24 29 29 O 1.42903 * 109.47137 * 66.45158 * 28 26 25 30 30 C 1.54635 * 110.38375 * 158.23860 * 22 21 19 31 31 H 0.97002 * 119.99068 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47140 * 59.99540 * 9 7 2 33 33 H 1.08999 * 109.46803 * 299.99806 * 9 7 2 34 34 H 1.08992 * 109.47206 * 59.99952 * 10 9 7 35 35 H 1.08999 * 109.47043 * 299.99629 * 10 9 7 36 36 H 1.07997 * 120.77651 * 359.96010 * 13 12 11 37 37 H 1.07998 * 120.32663 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.52851 * 180.02562 * 15 14 13 39 39 H 0.96999 * 120.00258 * 179.73283 * 18 17 16 40 40 H 0.97000 * 119.99659 * 359.97438 * 21 19 18 41 41 H 1.07999 * 124.44641 * 77.64811 * 24 22 21 42 42 H 1.08002 * 124.44516 * 179.97438 * 25 24 22 43 43 H 1.08993 * 109.47309 * 186.45046 * 28 26 25 44 44 H 1.09005 * 109.46941 * 306.45360 * 28 26 25 45 45 H 0.96697 * 114.00391 * 180.02562 * 29 28 26 46 46 H 1.09005 * 111.03380 * 212.20819 * 30 22 21 47 47 H 1.08994 * 111.04240 * 336.14479 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5305 -4.8997 0.0024 12 6 2.2711 -6.0402 0.0030 13 6 3.6576 -5.9796 0.0036 14 6 4.3713 -7.1699 0.0048 15 6 3.6874 -8.3693 0.0048 16 7 2.3679 -8.3983 0.0093 17 6 1.6486 -7.2883 0.0028 18 7 0.2550 -7.3666 0.0017 19 6 -0.3522 -8.5699 0.0019 20 8 0.3137 -9.5870 0.0025 21 7 -1.6980 -8.6456 0.0003 22 6 -2.3581 -9.9535 -0.0001 23 1 -1.7898 -10.6650 0.5990 24 6 -2.5155 -10.4631 -1.4138 25 6 -3.7395 -10.3027 -1.8377 26 6 -4.6010 -9.6537 -0.7795 27 1 -5.5627 -10.1617 -0.7088 28 6 -4.8025 -8.1697 -1.0925 29 8 -5.5749 -8.0355 -2.2873 30 6 -3.8032 -9.8276 0.5356 31 1 -0.4849 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.8710 -3.6041 0.8922 35 1 2.8724 -3.6049 -0.8877 36 1 4.1692 -5.0285 0.0029 37 1 5.4512 -7.1582 0.0057 38 1 4.2400 -9.2972 0.0061 39 1 -0.2764 -6.5552 0.0009 40 1 -2.2293 -7.8341 -0.0005 41 1 -1.7197 -10.9029 -1.9967 42 1 -4.0893 -10.5915 -2.8178 43 1 -5.3270 -7.6918 -0.2652 44 1 -3.8322 -7.6928 -1.2317 45 1 -5.7418 -7.1191 -2.5469 46 1 -4.1048 -10.7321 1.0640 47 1 -3.9091 -8.9502 1.1735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188728492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = -72.884889 kcal Electronic energy + Delta-G solvation = -29770.017124 eV Core-core repulsion = 25532.176723 eV Total energy + Delta-G solvation = -4237.840400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12263 -41.15407 -39.85174 -39.04404 -37.24608 -35.91231 -35.43502 -34.63548 -32.85784 -32.19401 -30.81027 -30.41338 -28.87015 -27.15897 -25.51153 -24.72784 -23.94569 -22.85335 -21.91650 -21.55260 -20.05479 -19.55507 -19.32921 -18.79029 -18.23855 -18.02157 -17.38307 -17.17494 -17.06735 -16.71035 -16.46782 -16.30722 -15.76325 -15.53135 -15.29074 -15.13420 -15.00142 -14.78483 -14.35258 -14.14008 -13.65376 -13.29055 -13.27510 -13.26140 -12.85488 -12.78236 -12.77064 -12.49974 -12.43347 -12.18465 -11.92319 -11.86133 -11.70657 -11.64663 -11.57911 -11.38319 -10.88373 -10.61113 -10.42570 -10.30271 -10.13220 -10.07109 -8.81729 -8.25745 -6.37691 0.15925 0.31406 1.01893 1.42308 1.43081 1.55571 1.62734 2.09727 2.12381 2.44688 2.92407 2.97772 3.09838 3.22966 3.49074 3.58923 3.79947 3.87674 3.97516 4.08075 4.14360 4.18648 4.30474 4.35015 4.35973 4.47724 4.49145 4.60176 4.66017 4.75681 4.79399 4.89186 4.97236 5.05358 5.14145 5.17240 5.28406 5.32213 5.46066 5.51195 5.52813 5.53656 5.70749 5.78101 5.86479 6.08777 6.35559 6.70540 6.77207 6.86925 7.16204 7.32291 7.53047 8.87030 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.002618 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.045738 B =10694.522585 C =13574.330063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.329 6.329 12 C 0.039 3.961 13 C -0.147 4.147 14 C -0.148 4.148 15 C 0.074 3.926 16 N -0.472 5.472 17 C 0.329 3.671 18 N -0.661 5.661 19 C 0.694 3.306 20 O -0.571 6.571 21 N -0.721 5.721 22 C 0.181 3.819 23 H 0.081 0.919 24 C -0.193 4.193 25 C -0.125 4.125 26 C -0.072 4.072 27 H 0.097 0.903 28 C 0.083 3.917 29 O -0.591 6.591 30 C -0.113 4.113 31 H 0.266 0.734 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.185 0.815 39 H 0.424 0.576 40 H 0.405 0.595 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.396 0.604 46 H 0.113 0.887 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -18.171 0.203 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.242 6.242 12 C -0.012 4.012 13 C -0.173 4.173 14 C -0.168 4.168 15 C -0.083 4.083 16 N -0.188 5.188 17 C 0.096 3.904 18 N -0.311 5.311 19 C 0.394 3.606 20 O -0.445 6.445 21 N -0.378 5.378 22 C 0.077 3.923 23 H 0.099 0.901 24 C -0.212 4.212 25 C -0.144 4.144 26 C -0.091 4.091 27 H 0.115 0.885 28 C 0.005 3.995 29 O -0.400 6.400 30 C -0.151 4.151 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.202 0.798 39 H 0.262 0.738 40 H 0.242 0.758 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.246 0.754 46 H 0.131 0.869 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.798 -20.431 0.267 20.989 hybrid contribution 0.313 3.168 -0.327 3.200 sum -4.485 -17.263 -0.060 17.836 Atomic orbital electron populations 1.70102 1.07835 1.28013 1.50796 1.25937 0.95769 1.03358 0.94354 0.85331 0.79182 0.78411 0.77726 1.18217 1.20491 1.20464 1.21429 0.93855 0.91070 1.51754 0.91180 1.18940 0.94503 0.90942 0.96281 1.22950 0.95635 0.79655 1.00854 1.86019 1.36603 1.12984 1.88629 1.19675 0.92118 0.86053 1.03312 1.21885 0.91359 1.01815 1.02277 1.22262 1.03043 0.91051 1.00480 1.23052 0.88076 0.99756 0.97371 1.67685 1.09378 1.27134 1.14557 1.17681 0.84575 0.87037 1.01099 1.42528 1.03888 1.09193 1.75532 1.16160 0.83000 0.83242 0.78214 1.90978 1.64119 1.34003 1.55445 1.45260 1.03300 1.10002 1.79208 1.20656 0.94142 0.83222 0.94298 0.90071 1.23547 0.97608 1.01988 0.98080 1.23355 0.94921 0.96870 0.99295 1.21122 0.99810 0.94986 0.93146 0.88461 1.22309 0.94452 0.95347 0.87399 1.86406 1.75133 1.33951 1.44469 1.22797 0.90619 1.05431 0.96258 0.92545 0.98008 0.97940 0.91814 0.91885 0.82525 0.80731 0.79819 0.73832 0.75828 0.87354 0.85545 0.91275 0.94126 0.75434 0.86905 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.52 5.34 29.85 0.16 1.68 16 10 C 0.08 3.24 4.70 71.98 0.34 3.57 16 11 O -0.33 -12.16 9.39 -93.37 -0.88 -13.04 16 12 C 0.04 1.31 6.72 22.70 0.15 1.46 16 13 C -0.15 -4.01 9.14 22.53 0.21 -3.80 16 14 C -0.15 -3.27 10.10 22.36 0.23 -3.05 16 15 C 0.07 1.91 11.17 84.63 0.95 2.86 16 16 N -0.47 -16.03 7.87 -192.58 -1.52 -17.54 16 17 C 0.33 11.19 7.45 132.98 0.99 12.18 16 18 N -0.66 -20.32 5.40 -321.76 -1.74 -22.06 16 19 C 0.69 21.23 8.52 179.05 1.53 22.76 16 20 O -0.57 -21.56 14.30 -3.97 -0.06 -21.61 16 21 N -0.72 -15.74 5.05 -458.11 -2.32 -18.06 16 22 C 0.18 3.54 3.19 44.93 0.14 3.68 16 23 H 0.08 1.86 7.65 -2.39 -0.02 1.85 16 24 C -0.19 -4.05 10.39 26.26 0.27 -3.78 16 25 C -0.13 -2.24 9.92 26.26 0.26 -1.98 16 26 C -0.07 -1.00 3.19 -10.80 -0.03 -1.04 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 C 0.08 1.13 6.36 71.98 0.46 1.59 16 29 O -0.59 -9.51 13.48 -148.98 -2.01 -11.52 16 30 C -0.11 -1.37 6.33 31.77 0.20 -1.17 16 31 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 35 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 36 H 0.16 3.83 6.44 -2.91 -0.02 3.81 16 37 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.42 11.61 8.06 -92.71 -0.75 10.86 16 40 H 0.40 6.90 7.19 -92.71 -0.67 6.23 16 41 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.04 0.60 6.70 -2.38 -0.02 0.58 16 45 H 0.40 3.47 9.12 -74.06 -0.68 2.79 16 46 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.10 0.95 7.78 -2.39 -0.02 0.93 16 Total: -1.00 -75.08 394.04 -0.72 -75.80 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -1.06 Total: 30.51 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.54 Total: 7.18 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -5.28 Total: -110.97 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.94 Total: -46.17 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -75.08 -0.72 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188728492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.916 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds