Wall clock time and date at job start Wed Apr 1 2020 04:20:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86798 * 119.99843 * 2 1
4 4 H 1.48494 * 109.47482 * 270.00308 * 3 2 1
5 5 H 1.48504 * 109.47406 * 30.00402 * 3 2 1
6 6 H 1.48507 * 109.46872 * 150.00352 * 3 2 1
7 7 C 1.37869 * 119.99845 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00296 * 0.02562 * 7 2 1
9 9 C 1.50704 * 119.99848 * 179.97438 * 7 2 1
10 10 N 1.46507 * 109.47149 * 179.97438 * 9 7 2
11 11 C 1.46500 * 120.00096 * 270.00515 * 10 9 7
12 12 C 1.52999 * 109.46795 * 269.99824 * 11 10 9
13 13 C 1.52994 * 117.49928 * 243.61816 * 12 11 10
14 14 C 1.53000 * 60.00357 * 252.51077 * 13 12 11
15 15 C 1.34772 * 119.99654 * 90.00428 * 10 9 7
16 16 O 1.21588 * 120.00271 * 359.97438 * 15 10 9
17 17 N 1.34773 * 119.99749 * 180.02562 * 15 10 9
18 18 C 1.39941 * 120.00022 * 185.30203 * 17 15 10
19 19 C 1.38928 * 120.04566 * 213.31848 * 18 17 15
20 20 C 1.38121 * 120.04489 * 179.97438 * 19 18 17
21 21 C 1.38213 * 120.12104 * 359.72551 * 20 19 18
22 22 C 1.38763 * 120.08220 * 0.55655 * 21 20 19
23 23 O 1.35904 * 120.02209 * 179.72129 * 22 21 20
24 24 C 1.42904 * 116.99606 * 359.72395 * 23 22 21
25 25 C 1.50700 * 109.46823 * 180.02562 * 24 23 22
26 26 N 1.34776 * 120.00060 * 179.72642 * 25 24 23
27 27 O 1.21278 * 120.00223 * 359.97438 * 25 24 23
28 28 C 1.38622 * 119.95911 * 359.43932 * 22 21 20
29 29 H 0.96998 * 119.99687 * 359.97438 * 1 2 3
30 30 H 1.09002 * 109.46986 * 60.00142 * 9 7 2
31 31 H 1.08998 * 109.47644 * 300.00083 * 9 7 2
32 32 H 1.08999 * 109.46820 * 29.99780 * 11 10 9
33 33 H 1.08996 * 109.47360 * 149.99838 * 11 10 9
34 34 H 1.09005 * 115.55073 * 29.33284 * 12 11 10
35 35 H 1.08997 * 117.49918 * 0.02562 * 13 12 11
36 36 H 1.09008 * 117.50026 * 145.02061 * 13 12 11
37 37 H 1.08995 * 117.50244 * 252.50864 * 14 13 12
38 38 H 1.09001 * 117.49250 * 107.48516 * 14 13 12
39 39 H 0.96998 * 120.00476 * 5.30674 * 17 15 10
40 40 H 1.08006 * 119.97709 * 0.02562 * 19 18 17
41 41 H 1.08000 * 119.93898 * 180.02562 * 20 19 18
42 42 H 1.07999 * 119.95782 * 180.29726 * 21 20 19
43 43 H 1.08994 * 109.47138 * 59.99808 * 24 23 22
44 44 H 1.09001 * 109.46785 * 300.00050 * 24 23 22
45 45 H 0.96990 * 120.00720 * 180.27263 * 26 25 24
46 46 H 0.97010 * 119.99619 * 0.26925 * 26 25 24
47 47 H 1.08005 * 120.06489 * 180.25579 * 28 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1293 -0.0014
9 6 3.5115 -1.1940 -0.0011
10 7 3.9999 -2.5753 -0.0010
11 6 4.2445 -3.2657 1.2678
12 6 5.6896 -3.0251 1.7089
13 6 6.6130 -4.2418 1.7972
14 6 6.1107 -3.5683 3.0759
15 6 4.2241 -3.2108 -1.1681
16 8 4.0207 -2.6379 -2.2212
17 7 4.6729 -4.4816 -1.1681
18 6 5.0113 -5.1042 -2.3748
19 6 4.8054 -6.4688 -2.5351
20 6 5.1389 -7.0832 -3.7264
21 6 5.6729 -6.3418 -4.7635
22 6 5.8862 -4.9796 -4.6068
23 8 6.4166 -4.2529 -5.6254
24 6 6.7364 -4.9573 -6.8270
25 6 7.3097 -3.9955 -7.8356
26 7 7.6913 -4.4399 -9.0494
27 8 7.4318 -2.8223 -7.5535
28 6 5.5526 -4.3595 -3.4128
29 1 -0.4849 0.8401 0.0004
30 1 3.8752 -0.6804 0.8889
31 1 3.8746 -0.6800 -0.8911
32 1 3.5639 -2.8814 2.0275
33 1 4.0774 -4.3349 1.1377
34 1 6.1292 -2.0817 1.3851
35 1 6.1911 -5.2135 1.5407
36 1 7.6605 -4.0990 1.5313
37 1 6.8275 -2.9825 3.6512
38 1 5.3582 -4.0971 3.6608
39 1 4.7612 -4.9647 -0.3316
40 1 4.3834 -7.0494 -1.7281
41 1 4.9777 -8.1440 -3.8493
42 1 5.9283 -6.8241 -5.6954
43 1 5.8333 -5.4136 -7.2320
44 1 7.4694 -5.7340 -6.6086
45 1 8.0639 -3.8217 -9.6972
46 1 7.5933 -5.3783 -9.2751
47 1 5.7141 -3.2986 -3.2905
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000267479284.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:18
Heat of formation + Delta-G solvation = -31.270337 kcal
Electronic energy + Delta-G solvation = -30181.043708 eV
Core-core repulsion = 25945.007849 eV
Total energy + Delta-G solvation = -4236.035858 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.67016 -40.04302 -39.09856 -37.65987 -37.03151 -34.69213 -34.12016 -34.09028
-32.40788 -30.73627 -29.44257 -28.30013 -28.13480 -26.25141 -23.39620 -22.58028
-22.34364 -21.96241 -20.96688 -20.74496 -19.27685 -18.73917 -17.96878 -17.62613
-16.89974 -16.81881 -16.54329 -16.09746 -15.92113 -15.49878 -15.14487 -14.91664
-14.58787 -14.45165 -14.16172 -13.92096 -13.76690 -13.51918 -13.20339 -12.97022
-12.68656 -12.53030 -12.22425 -11.90182 -11.66334 -11.54421 -11.49178 -11.39633
-11.16977 -10.91597 -10.57457 -10.37131 -10.25479 -10.14304 -10.11221 -9.98126
-9.96074 -9.50856 -9.33028 -8.54875 -8.27621 -8.02478 -7.66368 -6.05069
-4.03731 1.39360 1.51251 2.24079 2.45524 3.06614 3.33908 3.39451
3.42595 3.58628 3.62941 3.78601 4.02246 4.32933 4.39422 4.43658
4.62106 4.72187 4.81742 4.86431 4.92197 5.02238 5.07745 5.22443
5.27914 5.29733 5.38830 5.60136 5.60704 5.71176 5.86762 5.89783
5.97251 6.08825 6.25915 6.31083 6.33232 6.36793 6.42468 6.50282
6.66314 6.82762 6.90542 7.06714 7.25535 7.40869 7.48750 7.64963
7.86850 8.43585 8.50613 8.97716 9.14814 9.55260 11.08375
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.008832 B = 0.003023 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3169.414654 B = 9260.806707 C =11045.892942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.073 3.927
3 Si 0.875 3.125
4 H -0.273 1.273
5 H -0.285 1.285
6 H -0.265 1.265
7 C -0.529 4.529
8 H 0.074 0.926
9 C 0.230 3.770
10 N -0.598 5.598
11 C 0.143 3.857
12 C -0.169 4.169
13 C -0.183 4.183
14 C -0.174 4.174
15 C 0.701 3.299
16 O -0.560 6.560
17 N -0.691 5.691
18 C 0.224 3.776
19 C -0.190 4.190
20 C -0.060 4.060
21 C -0.239 4.239
22 C 0.146 3.854
23 O -0.288 6.288
24 C 0.041 3.959
25 C 0.517 3.483
26 N -0.853 5.853
27 O -0.512 6.512
28 C -0.151 4.151
29 H 0.264 0.736
30 H 0.033 0.967
31 H 0.039 0.961
32 H 0.095 0.905
33 H 0.062 0.938
34 H 0.109 0.891
35 H 0.090 0.910
36 H 0.091 0.909
37 H 0.092 0.908
38 H 0.096 0.904
39 H 0.403 0.597
40 H 0.125 0.875
41 H 0.126 0.874
42 H 0.123 0.877
43 H 0.094 0.906
44 H 0.093 0.907
45 H 0.408 0.592
46 H 0.402 0.598
47 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.108 -18.777 -7.545 26.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.129 4.129
3 Si 0.702 3.298
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.190 1.190
7 C -0.567 4.567
8 H 0.092 0.908
9 C 0.110 3.890
10 N -0.332 5.332
11 C 0.018 3.982
12 C -0.189 4.189
13 C -0.220 4.220
14 C -0.212 4.212
15 C 0.403 3.597
16 O -0.435 6.435
17 N -0.340 5.340
18 C 0.127 3.873
19 C -0.211 4.211
20 C -0.079 4.079
21 C -0.259 4.259
22 C 0.100 3.900
23 O -0.200 6.200
24 C -0.038 4.038
25 C 0.300 3.700
26 N -0.420 5.420
27 O -0.386 6.386
28 C -0.172 4.172
29 H 0.074 0.926
30 H 0.051 0.949
31 H 0.057 0.943
32 H 0.113 0.887
33 H 0.081 0.919
34 H 0.127 0.873
35 H 0.109 0.891
36 H 0.110 0.890
37 H 0.111 0.889
38 H 0.114 0.886
39 H 0.241 0.759
40 H 0.143 0.857
41 H 0.144 0.856
42 H 0.141 0.859
43 H 0.112 0.888
44 H 0.111 0.889
45 H 0.239 0.761
46 H 0.230 0.770
47 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 16.788 -17.138 -7.851 25.242
hybrid contribution 0.354 0.114 -0.047 0.375
sum 17.142 -17.023 -7.898 25.417
Atomic orbital electron populations
1.69898 1.06205 1.26958 1.50559 1.24834 0.94753 0.98915 0.94431
0.86868 0.80148 0.83809 0.78968 1.19826 1.21119 1.19014 1.21335
0.89229 0.94824 1.51340 0.90770 1.19636 0.95536 0.76266 0.97581
1.47180 1.67404 1.16053 1.02538 1.21005 0.93479 0.96066 0.87634
1.22980 0.96711 0.98732 1.00435 1.23020 0.99821 0.96751 1.02426
1.22912 1.03593 1.04035 0.90653 1.15874 0.78328 0.80426 0.85076
1.90952 1.57157 1.65617 1.29774 1.42965 1.69088 1.14209 1.07742
1.17154 0.93093 0.90993 0.86055 1.20761 1.07420 0.93456 0.99500
1.20576 0.96208 0.99211 0.91907 1.21044 1.10624 0.92995 1.01188
1.18711 0.93884 0.89723 0.87676 1.86190 1.77302 1.35528 1.20965
1.22389 1.01575 0.94385 0.85459 1.20141 0.77949 0.89025 0.82849
1.43651 1.68023 1.14302 1.16037 1.90846 1.52404 1.17535 1.77775
1.20384 1.03344 1.02200 0.91275 0.92586 0.94903 0.94318 0.88713
0.91942 0.87298 0.89109 0.89042 0.88904 0.88593 0.75935 0.85740
0.85608 0.85881 0.88819 0.88920 0.76065 0.76982 0.83469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16
2 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16
3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16
4 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16
5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16
7 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16
8 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16
9 C 0.23 5.66 4.23 -5.19 -0.02 5.64 16
10 N -0.60 -12.30 2.46 -180.80 -0.44 -12.75 16
11 C 0.14 2.20 5.50 -4.04 -0.02 2.18 16
12 C -0.17 -2.20 6.01 -90.62 -0.54 -2.75 16
13 C -0.18 -1.89 10.18 -26.73 -0.27 -2.17 16
14 C -0.17 -1.80 10.25 -26.73 -0.27 -2.07 16
15 C 0.70 14.87 8.01 -86.93 -0.70 14.17 16
16 O -0.56 -14.42 13.61 5.29 0.07 -14.35 16
17 N -0.69 -11.22 5.22 -14.24 -0.07 -11.30 16
18 C 0.22 3.55 6.28 -83.71 -0.53 3.02 16
19 C -0.19 -2.36 9.96 -39.37 -0.39 -2.75 16
20 C -0.06 -0.64 10.03 -39.63 -0.40 -1.04 16
21 C -0.24 -2.67 9.04 -39.40 -0.36 -3.02 16
22 C 0.15 2.16 6.68 -39.25 -0.26 1.90 16
23 O -0.29 -4.34 9.67 -39.35 -0.38 -4.72 16
24 C 0.04 0.38 5.22 36.01 0.19 0.57 16
25 C 0.52 5.44 8.18 -10.99 -0.09 5.35 16
26 N -0.85 -4.33 8.87 31.22 0.28 -4.06 16
27 O -0.51 -8.50 17.34 -14.35 -0.25 -8.75 16
28 C -0.15 -2.64 8.59 -39.25 -0.34 -2.98 16
29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16
31 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16
32 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16
33 H 0.06 0.80 6.02 -51.93 -0.31 0.49 16
34 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16
35 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16
36 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16
37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16
39 H 0.40 5.21 6.39 -40.82 -0.26 4.95 16
40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16
41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16
42 H 0.12 0.93 6.29 -52.49 -0.33 0.60 16
43 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16
44 H 0.09 0.54 7.67 -51.93 -0.40 0.15 16
45 H 0.41 1.79 8.93 -40.82 -0.36 1.43 16
46 H 0.40 0.51 8.83 -40.82 -0.36 0.15 16
47 H 0.15 3.05 6.41 -52.48 -0.34 2.72 16
LS Contribution 396.12 15.07 5.97 5.97
Total: -1.00 -40.31 396.12 -9.61 -49.92
By element:
Atomic # 1 Polarization: 13.97 SS G_CDS: -6.44 Total: 7.53 kcal
Atomic # 6 Polarization: 6.92 SS G_CDS: -4.44 Total: 2.47 kcal
Atomic # 7 Polarization: -55.87 SS G_CDS: 0.53 Total: -55.34 kcal
Atomic # 8 Polarization: -27.26 SS G_CDS: -0.56 Total: -27.82 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -40.31 -9.61 -49.92 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000267479284.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.651 kcal
(2) G-P(sol) polarization free energy of solvation -40.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds