Wall clock time and date at job start Wed Apr 1 2020 04:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99843 * 2 1 4 4 H 1.48494 * 109.47482 * 270.00308 * 3 2 1 5 5 H 1.48504 * 109.47406 * 30.00402 * 3 2 1 6 6 H 1.48507 * 109.46872 * 150.00352 * 3 2 1 7 7 C 1.37869 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99848 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47149 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00096 * 270.00515 * 10 9 7 12 12 C 1.52999 * 109.46795 * 269.99824 * 11 10 9 13 13 C 1.52994 * 117.49928 * 243.61816 * 12 11 10 14 14 C 1.53000 * 60.00357 * 252.51077 * 13 12 11 15 15 C 1.34772 * 119.99654 * 90.00428 * 10 9 7 16 16 O 1.21588 * 120.00271 * 359.97438 * 15 10 9 17 17 N 1.34773 * 119.99749 * 180.02562 * 15 10 9 18 18 C 1.39941 * 120.00022 * 185.30203 * 17 15 10 19 19 C 1.38928 * 120.04566 * 213.31848 * 18 17 15 20 20 C 1.38121 * 120.04489 * 179.97438 * 19 18 17 21 21 C 1.38213 * 120.12104 * 359.72551 * 20 19 18 22 22 C 1.38763 * 120.08220 * 0.55655 * 21 20 19 23 23 O 1.35904 * 120.02209 * 179.72129 * 22 21 20 24 24 C 1.42904 * 116.99606 * 359.72395 * 23 22 21 25 25 C 1.50700 * 109.46823 * 180.02562 * 24 23 22 26 26 N 1.34776 * 120.00060 * 179.72642 * 25 24 23 27 27 O 1.21278 * 120.00223 * 359.97438 * 25 24 23 28 28 C 1.38622 * 119.95911 * 359.43932 * 22 21 20 29 29 H 0.96998 * 119.99687 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 60.00142 * 9 7 2 31 31 H 1.08998 * 109.47644 * 300.00083 * 9 7 2 32 32 H 1.08999 * 109.46820 * 29.99780 * 11 10 9 33 33 H 1.08996 * 109.47360 * 149.99838 * 11 10 9 34 34 H 1.09005 * 115.55073 * 29.33284 * 12 11 10 35 35 H 1.08997 * 117.49918 * 0.02562 * 13 12 11 36 36 H 1.09008 * 117.50026 * 145.02061 * 13 12 11 37 37 H 1.08995 * 117.50244 * 252.50864 * 14 13 12 38 38 H 1.09001 * 117.49250 * 107.48516 * 14 13 12 39 39 H 0.96998 * 120.00476 * 5.30674 * 17 15 10 40 40 H 1.08006 * 119.97709 * 0.02562 * 19 18 17 41 41 H 1.08000 * 119.93898 * 180.02562 * 20 19 18 42 42 H 1.07999 * 119.95782 * 180.29726 * 21 20 19 43 43 H 1.08994 * 109.47138 * 59.99808 * 24 23 22 44 44 H 1.09001 * 109.46785 * 300.00050 * 24 23 22 45 45 H 0.96990 * 120.00720 * 180.27263 * 26 25 24 46 46 H 0.97010 * 119.99619 * 0.26925 * 26 25 24 47 47 H 1.08005 * 120.06489 * 180.25579 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6896 -3.0251 1.7089 13 6 6.6130 -4.2418 1.7972 14 6 6.1107 -3.5683 3.0759 15 6 4.2241 -3.2108 -1.1681 16 8 4.0207 -2.6379 -2.2212 17 7 4.6729 -4.4816 -1.1681 18 6 5.0113 -5.1042 -2.3748 19 6 4.8054 -6.4688 -2.5351 20 6 5.1389 -7.0832 -3.7264 21 6 5.6729 -6.3418 -4.7635 22 6 5.8862 -4.9796 -4.6068 23 8 6.4166 -4.2529 -5.6254 24 6 6.7364 -4.9573 -6.8270 25 6 7.3097 -3.9955 -7.8356 26 7 7.6913 -4.4399 -9.0494 27 8 7.4318 -2.8223 -7.5535 28 6 5.5526 -4.3595 -3.4128 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 3.5639 -2.8814 2.0275 33 1 4.0774 -4.3349 1.1377 34 1 6.1292 -2.0817 1.3851 35 1 6.1911 -5.2135 1.5407 36 1 7.6605 -4.0990 1.5313 37 1 6.8275 -2.9825 3.6512 38 1 5.3582 -4.0971 3.6608 39 1 4.7612 -4.9647 -0.3316 40 1 4.3834 -7.0494 -1.7281 41 1 4.9777 -8.1440 -3.8493 42 1 5.9283 -6.8241 -5.6954 43 1 5.8333 -5.4136 -7.2320 44 1 7.4694 -5.7340 -6.6086 45 1 8.0639 -3.8217 -9.6972 46 1 7.5933 -5.3783 -9.2751 47 1 5.7141 -3.2986 -3.2905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267479284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:18 Heat of formation + Delta-G solvation = -31.270337 kcal Electronic energy + Delta-G solvation = -30181.043708 eV Core-core repulsion = 25945.007849 eV Total energy + Delta-G solvation = -4236.035858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.67016 -40.04302 -39.09856 -37.65987 -37.03151 -34.69213 -34.12016 -34.09028 -32.40788 -30.73627 -29.44257 -28.30013 -28.13480 -26.25141 -23.39620 -22.58028 -22.34364 -21.96241 -20.96688 -20.74496 -19.27685 -18.73917 -17.96878 -17.62613 -16.89974 -16.81881 -16.54329 -16.09746 -15.92113 -15.49878 -15.14487 -14.91664 -14.58787 -14.45165 -14.16172 -13.92096 -13.76690 -13.51918 -13.20339 -12.97022 -12.68656 -12.53030 -12.22425 -11.90182 -11.66334 -11.54421 -11.49178 -11.39633 -11.16977 -10.91597 -10.57457 -10.37131 -10.25479 -10.14304 -10.11221 -9.98126 -9.96074 -9.50856 -9.33028 -8.54875 -8.27621 -8.02478 -7.66368 -6.05069 -4.03731 1.39360 1.51251 2.24079 2.45524 3.06614 3.33908 3.39451 3.42595 3.58628 3.62941 3.78601 4.02246 4.32933 4.39422 4.43658 4.62106 4.72187 4.81742 4.86431 4.92197 5.02238 5.07745 5.22443 5.27914 5.29733 5.38830 5.60136 5.60704 5.71176 5.86762 5.89783 5.97251 6.08825 6.25915 6.31083 6.33232 6.36793 6.42468 6.50282 6.66314 6.82762 6.90542 7.06714 7.25535 7.40869 7.48750 7.64963 7.86850 8.43585 8.50613 8.97716 9.14814 9.55260 11.08375 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.003023 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.414654 B = 9260.806707 C =11045.892942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.230 3.770 10 N -0.598 5.598 11 C 0.143 3.857 12 C -0.169 4.169 13 C -0.183 4.183 14 C -0.174 4.174 15 C 0.701 3.299 16 O -0.560 6.560 17 N -0.691 5.691 18 C 0.224 3.776 19 C -0.190 4.190 20 C -0.060 4.060 21 C -0.239 4.239 22 C 0.146 3.854 23 O -0.288 6.288 24 C 0.041 3.959 25 C 0.517 3.483 26 N -0.853 5.853 27 O -0.512 6.512 28 C -0.151 4.151 29 H 0.264 0.736 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.408 0.592 46 H 0.402 0.598 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.108 -18.777 -7.545 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.110 3.890 10 N -0.332 5.332 11 C 0.018 3.982 12 C -0.189 4.189 13 C -0.220 4.220 14 C -0.212 4.212 15 C 0.403 3.597 16 O -0.435 6.435 17 N -0.340 5.340 18 C 0.127 3.873 19 C -0.211 4.211 20 C -0.079 4.079 21 C -0.259 4.259 22 C 0.100 3.900 23 O -0.200 6.200 24 C -0.038 4.038 25 C 0.300 3.700 26 N -0.420 5.420 27 O -0.386 6.386 28 C -0.172 4.172 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.241 0.759 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.239 0.761 46 H 0.230 0.770 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.788 -17.138 -7.851 25.242 hybrid contribution 0.354 0.114 -0.047 0.375 sum 17.142 -17.023 -7.898 25.417 Atomic orbital electron populations 1.69898 1.06205 1.26958 1.50559 1.24834 0.94753 0.98915 0.94431 0.86868 0.80148 0.83809 0.78968 1.19826 1.21119 1.19014 1.21335 0.89229 0.94824 1.51340 0.90770 1.19636 0.95536 0.76266 0.97581 1.47180 1.67404 1.16053 1.02538 1.21005 0.93479 0.96066 0.87634 1.22980 0.96711 0.98732 1.00435 1.23020 0.99821 0.96751 1.02426 1.22912 1.03593 1.04035 0.90653 1.15874 0.78328 0.80426 0.85076 1.90952 1.57157 1.65617 1.29774 1.42965 1.69088 1.14209 1.07742 1.17154 0.93093 0.90993 0.86055 1.20761 1.07420 0.93456 0.99500 1.20576 0.96208 0.99211 0.91907 1.21044 1.10624 0.92995 1.01188 1.18711 0.93884 0.89723 0.87676 1.86190 1.77302 1.35528 1.20965 1.22389 1.01575 0.94385 0.85459 1.20141 0.77949 0.89025 0.82849 1.43651 1.68023 1.14302 1.16037 1.90846 1.52404 1.17535 1.77775 1.20384 1.03344 1.02200 0.91275 0.92586 0.94903 0.94318 0.88713 0.91942 0.87298 0.89109 0.89042 0.88904 0.88593 0.75935 0.85740 0.85608 0.85881 0.88819 0.88920 0.76065 0.76982 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 8 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.23 5.66 4.23 -5.19 -0.02 5.64 16 10 N -0.60 -12.30 2.46 -180.80 -0.44 -12.75 16 11 C 0.14 2.20 5.50 -4.04 -0.02 2.18 16 12 C -0.17 -2.20 6.01 -90.62 -0.54 -2.75 16 13 C -0.18 -1.89 10.18 -26.73 -0.27 -2.17 16 14 C -0.17 -1.80 10.25 -26.73 -0.27 -2.07 16 15 C 0.70 14.87 8.01 -86.93 -0.70 14.17 16 16 O -0.56 -14.42 13.61 5.29 0.07 -14.35 16 17 N -0.69 -11.22 5.22 -14.24 -0.07 -11.30 16 18 C 0.22 3.55 6.28 -83.71 -0.53 3.02 16 19 C -0.19 -2.36 9.96 -39.37 -0.39 -2.75 16 20 C -0.06 -0.64 10.03 -39.63 -0.40 -1.04 16 21 C -0.24 -2.67 9.04 -39.40 -0.36 -3.02 16 22 C 0.15 2.16 6.68 -39.25 -0.26 1.90 16 23 O -0.29 -4.34 9.67 -39.35 -0.38 -4.72 16 24 C 0.04 0.38 5.22 36.01 0.19 0.57 16 25 C 0.52 5.44 8.18 -10.99 -0.09 5.35 16 26 N -0.85 -4.33 8.87 31.22 0.28 -4.06 16 27 O -0.51 -8.50 17.34 -14.35 -0.25 -8.75 16 28 C -0.15 -2.64 8.59 -39.25 -0.34 -2.98 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 32 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 33 H 0.06 0.80 6.02 -51.93 -0.31 0.49 16 34 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 36 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 5.21 6.39 -40.82 -0.26 4.95 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.93 6.29 -52.49 -0.33 0.60 16 43 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16 44 H 0.09 0.54 7.67 -51.93 -0.40 0.15 16 45 H 0.41 1.79 8.93 -40.82 -0.36 1.43 16 46 H 0.40 0.51 8.83 -40.82 -0.36 0.15 16 47 H 0.15 3.05 6.41 -52.48 -0.34 2.72 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -40.31 396.12 -9.61 -49.92 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.44 Total: 7.53 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.44 Total: 2.47 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.53 Total: -55.34 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.56 Total: -27.82 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.31 -9.61 -49.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267479284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.651 kcal (2) G-P(sol) polarization free energy of solvation -40.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds