Wall clock time and date at job start Wed Apr 1 2020 04:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99843 * 2 1 4 4 H 1.48494 * 109.47482 * 270.00308 * 3 2 1 5 5 H 1.48504 * 109.47406 * 30.00402 * 3 2 1 6 6 H 1.48507 * 109.46872 * 150.00352 * 3 2 1 7 7 C 1.37869 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99848 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47149 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00096 * 270.00515 * 10 9 7 12 12 C 1.52999 * 109.46795 * 269.99824 * 11 10 9 13 13 C 1.52994 * 117.49928 * 243.61816 * 12 11 10 14 14 C 1.53000 * 60.00357 * 252.51077 * 13 12 11 15 15 C 1.34772 * 119.99654 * 90.00428 * 10 9 7 16 16 O 1.21588 * 120.00271 * 359.97438 * 15 10 9 17 17 N 1.34773 * 119.99749 * 180.02562 * 15 10 9 18 18 C 1.39941 * 120.00022 * 185.30203 * 17 15 10 19 19 C 1.38928 * 120.04566 * 213.31848 * 18 17 15 20 20 C 1.38121 * 120.04489 * 179.97438 * 19 18 17 21 21 C 1.38213 * 120.12104 * 359.72551 * 20 19 18 22 22 C 1.38763 * 120.08220 * 0.55655 * 21 20 19 23 23 O 1.35904 * 120.02209 * 179.72129 * 22 21 20 24 24 C 1.42904 * 116.99606 * 359.72395 * 23 22 21 25 25 C 1.50700 * 109.46823 * 180.02562 * 24 23 22 26 26 N 1.34776 * 120.00060 * 179.72642 * 25 24 23 27 27 O 1.21278 * 120.00223 * 359.97438 * 25 24 23 28 28 C 1.38622 * 119.95911 * 359.43932 * 22 21 20 29 29 H 0.96998 * 119.99687 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 60.00142 * 9 7 2 31 31 H 1.08998 * 109.47644 * 300.00083 * 9 7 2 32 32 H 1.08999 * 109.46820 * 29.99780 * 11 10 9 33 33 H 1.08996 * 109.47360 * 149.99838 * 11 10 9 34 34 H 1.09005 * 115.55073 * 29.33284 * 12 11 10 35 35 H 1.08997 * 117.49918 * 0.02562 * 13 12 11 36 36 H 1.09008 * 117.50026 * 145.02061 * 13 12 11 37 37 H 1.08995 * 117.50244 * 252.50864 * 14 13 12 38 38 H 1.09001 * 117.49250 * 107.48516 * 14 13 12 39 39 H 0.96998 * 120.00476 * 5.30674 * 17 15 10 40 40 H 1.08006 * 119.97709 * 0.02562 * 19 18 17 41 41 H 1.08000 * 119.93898 * 180.02562 * 20 19 18 42 42 H 1.07999 * 119.95782 * 180.29726 * 21 20 19 43 43 H 1.08994 * 109.47138 * 59.99808 * 24 23 22 44 44 H 1.09001 * 109.46785 * 300.00050 * 24 23 22 45 45 H 0.96990 * 120.00720 * 180.27263 * 26 25 24 46 46 H 0.97010 * 119.99619 * 0.26925 * 26 25 24 47 47 H 1.08005 * 120.06489 * 180.25579 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6896 -3.0251 1.7089 13 6 6.6130 -4.2418 1.7972 14 6 6.1107 -3.5683 3.0759 15 6 4.2241 -3.2108 -1.1681 16 8 4.0207 -2.6379 -2.2212 17 7 4.6729 -4.4816 -1.1681 18 6 5.0113 -5.1042 -2.3748 19 6 4.8054 -6.4688 -2.5351 20 6 5.1389 -7.0832 -3.7264 21 6 5.6729 -6.3418 -4.7635 22 6 5.8862 -4.9796 -4.6068 23 8 6.4166 -4.2529 -5.6254 24 6 6.7364 -4.9573 -6.8270 25 6 7.3097 -3.9955 -7.8356 26 7 7.6913 -4.4399 -9.0494 27 8 7.4318 -2.8223 -7.5535 28 6 5.5526 -4.3595 -3.4128 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 3.5639 -2.8814 2.0275 33 1 4.0774 -4.3349 1.1377 34 1 6.1292 -2.0817 1.3851 35 1 6.1911 -5.2135 1.5407 36 1 7.6605 -4.0990 1.5313 37 1 6.8275 -2.9825 3.6512 38 1 5.3582 -4.0971 3.6608 39 1 4.7612 -4.9647 -0.3316 40 1 4.3834 -7.0494 -1.7281 41 1 4.9777 -8.1440 -3.8493 42 1 5.9283 -6.8241 -5.6954 43 1 5.8333 -5.4136 -7.2320 44 1 7.4694 -5.7340 -6.6086 45 1 8.0639 -3.8217 -9.6972 46 1 7.5933 -5.3783 -9.2751 47 1 5.7141 -3.2986 -3.2905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267479284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:17 Heat of formation + Delta-G solvation = -62.573371 kcal Electronic energy + Delta-G solvation = -30182.401109 eV Core-core repulsion = 25945.007849 eV Total energy + Delta-G solvation = -4237.393260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90334 -41.16751 -40.11836 -38.73181 -38.17843 -36.27098 -35.54086 -34.82649 -34.53480 -31.71766 -30.90834 -29.69707 -29.09133 -27.71016 -25.01590 -23.74822 -23.22674 -23.15483 -22.07687 -21.68857 -20.68290 -19.88399 -19.12928 -18.98986 -18.60851 -17.80669 -17.35567 -17.22153 -16.95640 -16.74009 -16.51372 -16.20369 -15.96767 -15.68966 -15.38921 -15.19158 -14.96843 -14.69722 -14.57091 -14.37044 -13.97422 -13.92492 -13.63985 -13.44970 -13.05497 -12.73241 -12.60958 -12.47573 -12.35348 -12.30165 -12.18816 -12.06032 -11.77819 -11.34806 -11.24509 -11.20041 -11.07549 -10.84185 -10.78001 -10.76388 -9.61384 -9.34384 -8.93588 -8.35347 -6.39626 0.34396 0.50143 1.29663 1.35615 1.42452 1.46051 1.56645 1.78416 2.12850 2.29265 2.72682 2.86639 2.89905 2.99135 3.11405 3.78508 3.80854 3.96360 3.99554 4.06529 4.09222 4.13879 4.19486 4.22625 4.31214 4.42145 4.52210 4.63856 4.70100 4.75051 4.80070 4.82858 4.90615 5.05909 5.26674 5.30485 5.31730 5.34215 5.39745 5.43459 5.52377 5.56549 5.78450 5.91697 5.98775 6.25018 6.30815 6.50799 6.60820 6.95605 7.21761 7.25490 7.55878 8.81672 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.003023 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.414654 B = 9260.806707 C =11045.892942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.238 1.238 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.243 3.757 10 N -0.605 5.605 11 C 0.141 3.859 12 C -0.195 4.195 13 C -0.168 4.168 14 C -0.155 4.155 15 C 0.695 3.305 16 O -0.618 6.618 17 N -0.671 5.671 18 C 0.195 3.805 19 C -0.184 4.184 20 C -0.047 4.047 21 C -0.221 4.221 22 C 0.133 3.867 23 O -0.331 6.331 24 C 0.033 3.967 25 C 0.512 3.488 26 N -0.822 5.822 27 O -0.590 6.590 28 C -0.193 4.193 29 H 0.269 0.731 30 H 0.053 0.947 31 H 0.014 0.986 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.419 0.581 40 H 0.154 0.846 41 H 0.176 0.824 42 H 0.171 0.829 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.413 0.587 46 H 0.425 0.575 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.071 -22.873 -7.633 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.162 1.162 7 C -0.572 4.572 8 H 0.049 0.951 9 C 0.120 3.880 10 N -0.338 5.338 11 C 0.019 3.981 12 C -0.214 4.214 13 C -0.205 4.205 14 C -0.193 4.193 15 C 0.397 3.603 16 O -0.497 6.497 17 N -0.322 5.322 18 C 0.099 3.901 19 C -0.205 4.205 20 C -0.065 4.065 21 C -0.240 4.240 22 C 0.088 3.912 23 O -0.244 6.244 24 C -0.045 4.045 25 C 0.297 3.703 26 N -0.389 5.389 27 O -0.469 6.469 28 C -0.214 4.214 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.260 0.740 40 H 0.171 0.829 41 H 0.193 0.807 42 H 0.188 0.812 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.246 0.754 46 H 0.257 0.743 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.801 -21.373 -7.939 29.552 hybrid contribution -0.243 1.183 -0.183 1.222 sum 18.557 -20.190 -8.122 28.601 Atomic orbital electron populations 1.70038 1.08060 1.28275 1.51984 1.25773 0.95653 1.03072 0.93908 0.85783 0.80002 0.78770 0.78806 1.20708 1.19581 1.16162 1.21539 0.91429 0.93280 1.50947 0.95107 1.19239 0.92691 0.78998 0.97073 1.47112 1.67166 1.15059 1.04431 1.21241 0.95067 0.96936 0.84898 1.22698 0.95543 0.99445 1.03763 1.23144 0.99457 0.96163 1.01764 1.23027 1.03456 1.03002 0.89789 1.16119 0.78140 0.81735 0.84281 1.90908 1.59596 1.67373 1.31872 1.42585 1.68166 1.12312 1.09116 1.17463 0.94746 0.92507 0.85396 1.21139 1.06440 0.91575 1.01329 1.21193 0.93657 1.01339 0.90356 1.21547 1.08314 0.90927 1.03197 1.18832 0.94312 0.91305 0.86799 1.86136 1.77574 1.37985 1.22738 1.22833 1.04038 0.94341 0.83278 1.20587 0.77297 0.88231 0.84206 1.43425 1.65589 1.15726 1.14178 1.90821 1.56025 1.20637 1.79434 1.20250 1.06781 1.00245 0.94156 0.92240 0.92893 0.96762 0.89764 0.89229 0.89522 0.87182 0.88594 0.87939 0.87139 0.74038 0.82881 0.80696 0.81199 0.85618 0.84740 0.75419 0.74266 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.23 13.96 21.44 0.30 -60.93 16 2 C 0.01 0.86 5.47 84.65 0.46 1.33 16 3 Si 0.94 46.58 27.47 68.60 1.88 48.47 16 4 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 7 C -0.53 -32.53 9.94 25.60 0.25 -32.28 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.24 12.51 4.23 85.63 0.36 12.87 16 10 N -0.60 -26.19 2.46 -844.19 -2.07 -28.26 16 11 C 0.14 4.39 5.50 86.38 0.48 4.86 16 12 C -0.19 -4.98 6.01 -10.79 -0.06 -5.04 16 13 C -0.17 -3.10 10.18 30.59 0.31 -2.79 16 14 C -0.16 -2.83 10.25 30.60 0.31 -2.52 16 15 C 0.70 31.49 8.01 179.06 1.44 32.92 16 16 O -0.62 -34.83 13.61 -3.99 -0.05 -34.88 16 17 N -0.67 -22.42 5.22 -317.23 -1.66 -24.07 16 18 C 0.19 6.23 6.28 38.13 0.24 6.47 16 19 C -0.18 -4.01 9.96 22.41 0.22 -3.78 16 20 C -0.05 -0.76 10.03 22.24 0.22 -0.54 16 21 C -0.22 -4.04 9.04 22.39 0.20 -3.84 16 22 C 0.13 3.95 6.68 22.49 0.15 4.10 16 23 O -0.33 -10.26 9.67 -73.43 -0.71 -10.97 16 24 C 0.03 0.53 5.22 71.24 0.37 0.90 16 25 C 0.51 10.50 8.18 87.66 0.72 11.22 16 26 N -0.82 -6.64 8.87 -173.54 -1.54 -8.18 16 27 O -0.59 -20.78 17.34 16.02 0.28 -20.50 16 28 C -0.19 -7.25 8.59 22.48 0.19 -7.06 16 29 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 30 H 0.05 2.50 7.13 -2.39 -0.02 2.49 16 31 H 0.01 0.81 6.85 -2.39 -0.02 0.79 16 32 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 33 H 0.09 2.22 6.02 -2.39 -0.01 2.20 16 34 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.11 1.60 7.91 -2.39 -0.02 1.58 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.42 10.50 6.39 -92.71 -0.59 9.91 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.17 1.44 6.29 -2.91 -0.02 1.42 16 43 H 0.13 1.19 7.65 -2.39 -0.02 1.17 16 44 H 0.14 0.99 7.67 -2.39 -0.02 0.98 16 45 H 0.41 3.02 8.93 -92.72 -0.83 2.19 16 46 H 0.42 -0.45 8.83 -92.70 -0.82 -1.27 16 47 H 0.09 4.48 6.41 -2.91 -0.02 4.47 16 Total: -1.00 -101.60 396.12 1.05 -100.56 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -1.25 Total: 21.97 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 5.87 Total: 16.82 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.97 Total: -121.45 kcal Atomic # 8 Polarization: -65.87 SS G_CDS: -0.49 Total: -66.36 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Total: -101.60 1.05 -100.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267479284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.983 kcal (2) G-P(sol) polarization free energy of solvation -101.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds