Wall clock time and date at job start Wed Apr 1 2020 04:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99654 * 2 1 4 4 H 1.48499 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47398 * 299.99983 * 3 2 1 6 6 H 1.48504 * 109.46964 * 60.00136 * 3 2 1 7 7 C 1.38812 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00099 * 197.59616 * 7 2 1 9 9 N 1.36940 * 119.99523 * 17.59273 * 7 2 1 10 10 C 1.46961 * 120.59152 * 208.19739 * 9 7 2 11 11 C 1.53369 * 108.63873 * 235.24960 * 10 9 7 12 12 N 1.46959 * 108.63416 * 310.58302 * 11 10 9 13 13 C 1.34777 * 120.59341 * 235.20014 * 12 11 10 14 14 O 1.21288 * 120.00151 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00554 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47472 * 180.02562 * 15 13 12 17 17 O 1.42904 * 109.46966 * 179.97438 * 16 15 13 18 18 C 1.35913 * 116.99720 * 179.97438 * 17 16 15 19 19 C 1.38852 * 119.98535 * 359.72334 * 18 17 16 20 20 C 1.38244 * 120.23750 * 180.27871 * 19 18 17 21 21 C 1.38008 * 120.21088 * 359.97438 * 20 19 18 22 22 C 1.39567 * 119.96270 * 0.02562 * 21 20 19 23 23 C 1.47859 * 120.11750 * 179.97438 * 22 21 20 24 24 N 1.34771 * 119.99821 * 0.02562 * 23 22 21 25 25 O 1.21553 * 119.99619 * 180.02562 * 23 22 21 26 26 C 1.38449 * 119.98485 * 179.97438 * 18 17 16 27 27 C 1.46966 * 118.81754 * 55.47478 * 12 11 10 28 28 C 1.46959 * 120.59269 * 28.22664 * 9 7 2 29 29 H 0.97004 * 120.00182 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.60778 * 115.50626 * 10 9 7 31 31 H 1.09000 * 109.75323 * 355.08532 * 10 9 7 32 32 H 1.08995 * 109.61222 * 190.83043 * 11 10 9 33 33 H 1.09004 * 109.74606 * 70.40698 * 11 10 9 34 34 H 1.08996 * 109.47283 * 59.99451 * 15 13 12 35 35 H 1.09006 * 109.46676 * 300.00249 * 15 13 12 36 36 H 1.08996 * 109.47675 * 59.99891 * 16 15 13 37 37 H 1.09001 * 109.46857 * 299.99524 * 16 15 13 38 38 H 1.08001 * 119.88157 * 0.25869 * 19 18 17 39 39 H 1.08006 * 119.89536 * 180.02562 * 20 19 18 40 40 H 1.07993 * 120.01938 * 180.02562 * 21 20 19 41 41 H 0.96998 * 120.00478 * 0.02562 * 24 23 22 42 42 H 0.97004 * 119.99559 * 179.97438 * 24 23 22 43 43 H 1.08009 * 120.10236 * 359.70530 * 26 18 17 44 44 H 1.08998 * 109.60824 * 64.26321 * 27 12 11 45 45 H 1.08995 * 109.61300 * 184.77633 * 27 12 11 46 46 H 1.09005 * 109.61013 * 244.48947 * 28 9 7 47 47 H 1.08995 * 109.61719 * 4.83569 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2238 0.2833 9 7 1.3737 -2.3604 -0.3574 10 6 1.8125 -3.6536 0.1857 11 6 2.1178 -4.5980 -0.9835 12 7 0.9840 -4.5703 -1.9181 13 6 0.3580 -5.7104 -2.2711 14 8 0.7296 -6.7719 -1.8170 15 6 -0.8029 -5.6666 -3.2309 16 6 -1.3283 -7.0850 -3.4611 17 8 -2.4295 -7.0433 -4.3708 18 6 -3.0158 -8.2287 -4.6847 19 6 -2.5355 -9.4083 -4.1316 20 6 -3.1242 -10.6175 -4.4517 21 6 -4.1937 -10.6601 -5.3229 22 6 -4.6833 -9.4796 -5.8838 23 6 -5.8287 -9.5214 -6.8180 24 7 -6.4020 -10.7008 -7.1288 25 8 -6.2530 -8.4920 -7.3056 26 6 -4.0882 -8.2600 -5.5597 27 6 0.5488 -3.2777 -2.4656 28 6 0.2398 -2.3327 -1.2919 29 1 -0.4850 0.8401 0.0004 30 1 1.0207 -4.0790 0.8023 31 1 2.7103 -3.5147 0.7879 32 1 2.2578 -5.6117 -0.6081 33 1 3.0222 -4.2695 -1.4957 34 1 -0.4743 -5.2421 -4.1795 35 1 -1.5974 -5.0488 -2.8122 36 1 -1.6570 -7.5092 -2.5124 37 1 -0.5340 -7.7031 -3.8796 38 1 -1.6989 -9.3811 -3.4492 39 1 -2.7464 -11.5317 -4.0180 40 1 -4.6515 -11.6064 -5.5705 41 1 -6.0636 -11.5222 -6.7395 42 1 -7.1536 -10.7281 -7.7414 43 1 -4.4631 -7.3430 -5.9900 44 1 1.3434 -2.8545 -3.0800 45 1 -0.3477 -3.4193 -3.0691 46 1 -0.6640 -2.6641 -0.7806 47 1 0.0980 -1.3185 -1.6651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267598312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:28 Heat of formation + Delta-G solvation = -54.685012 kcal Electronic energy + Delta-G solvation = -29329.213454 eV Core-core repulsion = 25092.162259 eV Total energy + Delta-G solvation = -4237.051195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.77057 -39.91396 -39.38572 -37.44987 -36.85586 -34.21833 -33.95338 -32.54158 -31.51922 -31.16999 -30.25456 -29.74528 -27.10835 -25.34237 -24.07145 -23.37498 -22.79083 -22.59080 -20.85569 -20.38304 -19.09925 -18.57614 -17.69716 -17.25677 -16.71200 -16.54346 -16.37503 -16.02800 -15.66712 -15.36037 -15.18105 -14.90831 -14.76636 -14.51688 -14.07616 -13.76524 -13.68428 -13.52879 -13.33987 -13.21469 -13.13478 -12.52281 -12.41346 -12.07227 -11.97127 -11.65467 -11.40796 -11.17483 -10.96595 -10.89215 -10.78976 -10.54109 -10.47924 -10.29915 -10.15601 -10.09338 -9.89933 -9.53486 -9.41687 -8.66123 -8.59441 -8.34683 -6.77718 -5.91011 -3.35387 0.43276 1.03033 2.49291 2.61258 2.81908 3.11245 3.30545 3.39254 3.40991 3.48653 3.55099 4.33077 4.39339 4.40206 4.57765 4.64959 4.72819 4.82157 4.85154 5.00050 5.13637 5.18168 5.26204 5.31866 5.54144 5.60092 5.62771 5.72242 5.79749 5.82086 5.86894 5.93992 5.98263 6.06009 6.12328 6.21394 6.26695 6.35239 6.35443 6.71142 6.84032 6.86719 7.10374 7.12693 7.39580 7.67566 7.78755 7.81746 8.30342 8.38318 9.06579 9.69075 10.25641 11.16867 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.001772 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.724116 B =15798.513175 C =16871.195407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.592 5.592 13 C 0.516 3.484 14 O -0.564 6.564 15 C -0.140 4.140 16 C 0.076 3.924 17 O -0.312 6.312 18 C 0.132 3.868 19 C -0.181 4.181 20 C -0.086 4.086 21 C -0.129 4.129 22 C -0.105 4.105 23 C 0.565 3.435 24 N -0.850 5.850 25 O -0.535 6.535 26 C -0.093 4.093 27 C 0.076 3.924 28 C 0.156 3.844 29 H 0.255 0.745 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.401 0.599 42 H 0.406 0.594 43 H 0.145 0.855 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -22.352 -11.875 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.324 5.324 13 C 0.304 3.696 14 O -0.444 6.444 15 C -0.180 4.180 16 C 0.001 3.999 17 O -0.226 6.226 18 C 0.086 3.914 19 C -0.200 4.200 20 C -0.104 4.104 21 C -0.148 4.148 22 C -0.108 4.108 23 C 0.351 3.649 24 N -0.415 5.415 25 O -0.412 6.412 26 C -0.112 4.112 27 C -0.048 4.048 28 C 0.030 3.970 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.231 0.769 42 H 0.237 0.763 43 H 0.163 0.837 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.926 -21.754 -11.887 26.027 hybrid contribution 0.354 0.393 0.124 0.543 sum -7.572 -21.362 -11.763 25.535 Atomic orbital electron populations 1.70017 1.05319 1.25708 1.53524 1.25074 0.95304 0.98587 1.00552 0.86204 0.79396 0.83685 0.77364 1.20182 1.21433 1.21656 1.19246 0.92912 0.84647 1.41781 0.91383 1.43991 1.36699 1.01582 1.49109 1.21292 0.98503 0.87040 0.92724 1.22236 0.87596 1.01160 0.91863 1.48046 1.32757 1.06785 1.44792 1.20124 0.83654 0.83838 0.81987 1.90651 1.67240 1.29545 1.56983 1.21479 0.98080 0.97345 1.01067 1.22510 0.87071 0.97725 0.92569 1.86035 1.46650 1.27808 1.62062 1.18835 0.92928 0.84981 0.94650 1.21631 1.02836 0.92322 1.03191 1.20897 0.95147 0.97638 0.96720 1.21130 0.97960 0.96931 0.98749 1.19564 0.97459 0.93832 0.99920 1.18224 0.82464 0.83569 0.80630 1.43728 1.37638 1.09067 1.51055 1.90845 1.63785 1.33193 1.53382 1.20488 0.94550 0.98610 0.97577 1.22852 0.99349 0.83743 0.98842 1.21275 0.89293 0.98711 0.87750 0.93458 0.95852 0.91445 0.89942 0.91821 0.87814 0.87477 0.90867 0.90973 0.84413 0.84951 0.85569 0.76889 0.76330 0.83674 0.91507 0.90726 0.95729 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 11.20 55.49 0.62 -24.37 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -6.69 9.58 -15.06 -0.14 -6.83 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.02 2.97 -171.77 -0.51 -14.53 16 10 C 0.13 2.67 6.67 -3.60 -0.02 2.64 16 11 C 0.10 1.68 6.59 -3.60 -0.02 1.66 16 12 N -0.59 -10.14 2.94 -172.22 -0.51 -10.64 16 13 C 0.52 8.26 7.70 -10.99 -0.08 8.17 16 14 O -0.56 -10.28 15.39 5.55 0.09 -10.20 16 15 C -0.14 -1.74 4.41 -27.89 -0.12 -1.86 16 16 C 0.08 0.89 4.03 37.16 0.15 1.04 16 17 O -0.31 -3.79 10.13 -19.47 -0.20 -3.99 16 18 C 0.13 1.47 6.68 -39.28 -0.26 1.21 16 19 C -0.18 -1.68 9.03 -39.35 -0.36 -2.04 16 20 C -0.09 -0.62 10.03 -39.66 -0.40 -1.02 16 21 C -0.13 -0.86 9.54 -39.17 -0.37 -1.23 16 22 C -0.10 -0.97 5.87 -104.98 -0.62 -1.59 16 23 C 0.57 5.42 8.05 -12.33 -0.10 5.32 16 24 N -0.85 -4.13 8.82 30.53 0.27 -3.86 16 25 O -0.54 -7.39 17.18 5.32 0.09 -7.30 16 26 C -0.09 -1.03 9.53 -39.02 -0.37 -1.40 16 27 C 0.08 1.29 6.54 -3.36 -0.02 1.27 16 28 C 0.16 3.43 5.54 -3.37 -0.02 3.41 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.31 7.94 -51.93 -0.41 0.89 16 32 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16 35 H 0.11 1.29 7.73 -51.93 -0.40 0.89 16 36 H 0.07 0.86 7.62 -51.93 -0.40 0.47 16 37 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 38 H 0.14 1.20 6.28 -52.49 -0.33 0.87 16 39 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.13 0.39 6.40 -52.49 -0.34 0.05 16 41 H 0.40 0.75 6.86 -40.82 -0.28 0.47 16 42 H 0.41 1.47 8.93 -40.82 -0.36 1.11 16 43 H 0.15 1.72 7.65 -52.48 -0.40 1.32 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.04 5.91 -51.93 -0.31 0.73 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.10 2.47 5.98 -51.93 -0.31 2.16 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -33.63 384.85 -8.60 -42.23 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.37 Total: 2.33 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.85 Total: 8.76 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.12 Total: -53.41 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.02 Total: -21.48 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.63 -8.60 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267598312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.458 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds