Wall clock time and date at job start Wed Apr 1 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99654 * 2 1 4 4 H 1.48499 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47398 * 299.99983 * 3 2 1 6 6 H 1.48504 * 109.46964 * 60.00136 * 3 2 1 7 7 C 1.38812 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00099 * 197.59616 * 7 2 1 9 9 N 1.36940 * 119.99523 * 17.59273 * 7 2 1 10 10 C 1.46961 * 120.59152 * 208.19739 * 9 7 2 11 11 C 1.53369 * 108.63873 * 235.24960 * 10 9 7 12 12 N 1.46959 * 108.63416 * 310.58302 * 11 10 9 13 13 C 1.34777 * 120.59341 * 235.20014 * 12 11 10 14 14 O 1.21288 * 120.00151 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00554 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47472 * 180.02562 * 15 13 12 17 17 O 1.42904 * 109.46966 * 179.97438 * 16 15 13 18 18 C 1.35913 * 116.99720 * 179.97438 * 17 16 15 19 19 C 1.38852 * 119.98535 * 359.72334 * 18 17 16 20 20 C 1.38244 * 120.23750 * 180.27871 * 19 18 17 21 21 C 1.38008 * 120.21088 * 359.97438 * 20 19 18 22 22 C 1.39567 * 119.96270 * 0.02562 * 21 20 19 23 23 C 1.47859 * 120.11750 * 179.97438 * 22 21 20 24 24 N 1.34771 * 119.99821 * 0.02562 * 23 22 21 25 25 O 1.21553 * 119.99619 * 180.02562 * 23 22 21 26 26 C 1.38449 * 119.98485 * 179.97438 * 18 17 16 27 27 C 1.46966 * 118.81754 * 55.47478 * 12 11 10 28 28 C 1.46959 * 120.59269 * 28.22664 * 9 7 2 29 29 H 0.97004 * 120.00182 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.60778 * 115.50626 * 10 9 7 31 31 H 1.09000 * 109.75323 * 355.08532 * 10 9 7 32 32 H 1.08995 * 109.61222 * 190.83043 * 11 10 9 33 33 H 1.09004 * 109.74606 * 70.40698 * 11 10 9 34 34 H 1.08996 * 109.47283 * 59.99451 * 15 13 12 35 35 H 1.09006 * 109.46676 * 300.00249 * 15 13 12 36 36 H 1.08996 * 109.47675 * 59.99891 * 16 15 13 37 37 H 1.09001 * 109.46857 * 299.99524 * 16 15 13 38 38 H 1.08001 * 119.88157 * 0.25869 * 19 18 17 39 39 H 1.08006 * 119.89536 * 180.02562 * 20 19 18 40 40 H 1.07993 * 120.01938 * 180.02562 * 21 20 19 41 41 H 0.96998 * 120.00478 * 0.02562 * 24 23 22 42 42 H 0.97004 * 119.99559 * 179.97438 * 24 23 22 43 43 H 1.08009 * 120.10236 * 359.70530 * 26 18 17 44 44 H 1.08998 * 109.60824 * 64.26321 * 27 12 11 45 45 H 1.08995 * 109.61300 * 184.77633 * 27 12 11 46 46 H 1.09005 * 109.61013 * 244.48947 * 28 9 7 47 47 H 1.08995 * 109.61719 * 4.83569 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2238 0.2833 9 7 1.3737 -2.3604 -0.3574 10 6 1.8125 -3.6536 0.1857 11 6 2.1178 -4.5980 -0.9835 12 7 0.9840 -4.5703 -1.9181 13 6 0.3580 -5.7104 -2.2711 14 8 0.7296 -6.7719 -1.8170 15 6 -0.8029 -5.6666 -3.2309 16 6 -1.3283 -7.0850 -3.4611 17 8 -2.4295 -7.0433 -4.3708 18 6 -3.0158 -8.2287 -4.6847 19 6 -2.5355 -9.4083 -4.1316 20 6 -3.1242 -10.6175 -4.4517 21 6 -4.1937 -10.6601 -5.3229 22 6 -4.6833 -9.4796 -5.8838 23 6 -5.8287 -9.5214 -6.8180 24 7 -6.4020 -10.7008 -7.1288 25 8 -6.2530 -8.4920 -7.3056 26 6 -4.0882 -8.2600 -5.5597 27 6 0.5488 -3.2777 -2.4656 28 6 0.2398 -2.3327 -1.2919 29 1 -0.4850 0.8401 0.0004 30 1 1.0207 -4.0790 0.8023 31 1 2.7103 -3.5147 0.7879 32 1 2.2578 -5.6117 -0.6081 33 1 3.0222 -4.2695 -1.4957 34 1 -0.4743 -5.2421 -4.1795 35 1 -1.5974 -5.0488 -2.8122 36 1 -1.6570 -7.5092 -2.5124 37 1 -0.5340 -7.7031 -3.8796 38 1 -1.6989 -9.3811 -3.4492 39 1 -2.7464 -11.5317 -4.0180 40 1 -4.6515 -11.6064 -5.5705 41 1 -6.0636 -11.5222 -6.7395 42 1 -7.1536 -10.7281 -7.7414 43 1 -4.4631 -7.3430 -5.9900 44 1 1.3434 -2.8545 -3.0800 45 1 -0.3477 -3.4193 -3.0691 46 1 -0.6640 -2.6641 -0.7806 47 1 0.0980 -1.3185 -1.6651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267598312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:27 Heat of formation + Delta-G solvation = -78.499463 kcal Electronic energy + Delta-G solvation = -29330.246126 eV Core-core repulsion = 25092.162259 eV Total energy + Delta-G solvation = -4238.083867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55846 -41.10725 -40.27390 -38.55621 -38.08309 -35.63110 -34.87225 -33.75312 -32.87179 -32.11994 -31.72774 -30.59098 -28.75315 -26.38673 -25.40726 -24.72967 -23.99550 -23.45107 -22.08729 -21.41728 -20.13961 -19.73714 -18.78997 -18.17610 -17.90629 -17.49898 -17.39450 -16.97151 -16.84954 -16.66946 -16.28852 -16.20122 -15.82714 -15.47877 -15.29884 -15.21823 -15.00109 -14.73949 -14.50755 -14.45706 -14.33518 -13.70863 -13.42176 -13.26297 -13.03184 -12.92300 -12.74767 -12.66505 -12.48185 -12.20986 -12.04206 -12.02554 -11.84701 -11.81417 -11.66298 -11.25913 -10.91219 -10.76386 -10.60436 -10.09217 -9.86107 -9.32186 -8.66820 -7.89762 -5.37496 -0.26316 0.36345 1.47000 1.50619 1.53873 1.60179 1.66925 1.78420 2.25408 2.50750 2.60963 2.80334 3.25259 3.51738 3.58925 3.71686 3.75201 3.88474 3.89541 4.04712 4.12426 4.22421 4.23224 4.28256 4.38114 4.38444 4.50907 4.57672 4.63152 4.68128 4.70609 4.77712 4.81625 4.88505 5.06794 5.17607 5.22724 5.25344 5.34238 5.51568 5.60106 5.60347 5.65321 5.85112 6.30050 6.34985 6.39312 6.43722 7.07027 7.10529 7.25545 7.78228 8.31082 9.15514 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.001772 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.724116 B =15798.513175 C =16871.195407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.131 3.869 11 C 0.106 3.894 12 N -0.600 5.600 13 C 0.518 3.482 14 O -0.584 6.584 15 C -0.135 4.135 16 C 0.083 3.917 17 O -0.327 6.327 18 C 0.108 3.892 19 C -0.186 4.186 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.115 4.115 23 C 0.562 3.438 24 N -0.823 5.823 25 O -0.589 6.589 26 C -0.117 4.117 27 C 0.093 3.907 28 C 0.160 3.840 29 H 0.252 0.748 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.419 0.581 42 H 0.414 0.586 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.001 0.999 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -25.128 -12.841 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.005 3.995 11 C -0.018 4.018 12 N -0.331 5.331 13 C 0.308 3.692 14 O -0.466 6.466 15 C -0.174 4.174 16 C 0.008 3.992 17 O -0.241 6.241 18 C 0.063 3.937 19 C -0.204 4.204 20 C -0.099 4.099 21 C -0.129 4.129 22 C -0.118 4.118 23 C 0.348 3.652 24 N -0.388 5.388 25 O -0.471 6.471 26 C -0.136 4.136 27 C -0.030 4.030 28 C 0.034 3.966 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.160 0.840 39 H 0.185 0.815 40 H 0.188 0.812 41 H 0.252 0.748 42 H 0.247 0.753 43 H 0.141 0.859 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.019 0.981 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.524 -24.620 -12.863 28.778 hybrid contribution 0.187 1.086 0.471 1.198 sum -7.336 -23.534 -12.391 27.590 Atomic orbital electron populations 1.70160 1.06636 1.26025 1.55052 1.25777 0.95993 1.01441 1.00953 0.85217 0.78669 0.79836 0.76731 1.19109 1.21440 1.22300 1.19550 0.93156 0.85720 1.40967 0.91273 1.44261 1.36896 1.02111 1.49962 1.21367 0.98100 0.86211 0.93852 1.22030 0.88209 1.00539 0.91034 1.48100 1.32881 1.07159 1.44998 1.20619 0.83793 0.82965 0.81820 1.90639 1.67917 1.30219 1.57833 1.21451 0.96703 0.98278 1.00970 1.22387 0.87202 0.97139 0.92476 1.85987 1.46911 1.28852 1.62347 1.18985 0.93570 0.85338 0.95783 1.21823 1.03054 0.92526 1.03037 1.21341 0.94567 0.97990 0.96014 1.21582 0.96979 0.97497 0.96827 1.19676 0.97570 0.94204 1.00340 1.18377 0.82514 0.83971 0.80359 1.43518 1.36918 1.08359 1.50039 1.90820 1.65429 1.35283 1.55526 1.20468 0.95550 0.98918 0.98694 1.22612 1.01083 0.82592 0.96759 1.21125 0.88094 0.98504 0.88907 0.93904 0.97291 0.90883 0.89255 0.90970 0.85780 0.86930 0.91299 0.90583 0.83997 0.81508 0.81218 0.74763 0.75304 0.85896 0.90864 0.87374 0.98137 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.96 11.20 21.65 0.24 -52.72 16 2 C -0.05 -2.45 4.90 84.86 0.42 -2.04 16 3 Si 0.97 43.17 29.59 68.60 2.03 45.20 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.26 -13.86 9.58 84.03 0.80 -13.05 16 8 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 9 N -0.61 -29.16 2.97 -697.36 -2.07 -31.23 16 10 C 0.13 5.32 6.67 86.42 0.58 5.90 16 11 C 0.11 3.62 6.59 86.42 0.57 4.19 16 12 N -0.60 -19.76 2.94 -817.16 -2.40 -22.16 16 13 C 0.52 15.83 7.70 87.66 0.67 16.51 16 14 O -0.58 -20.55 15.39 -3.05 -0.05 -20.60 16 15 C -0.13 -3.14 4.41 29.85 0.13 -3.01 16 16 C 0.08 1.87 4.03 71.98 0.29 2.16 16 17 O -0.33 -7.96 10.13 -92.57 -0.94 -8.90 16 18 C 0.11 2.41 6.68 22.47 0.15 2.56 16 19 C -0.19 -3.15 9.03 22.42 0.20 -2.95 16 20 C -0.08 -0.89 10.03 22.22 0.22 -0.67 16 21 C -0.11 -1.09 9.54 22.54 0.21 -0.88 16 22 C -0.11 -2.01 5.87 -20.10 -0.12 -2.13 16 23 C 0.56 10.34 8.05 86.79 0.70 11.03 16 24 N -0.82 -5.99 8.82 -175.60 -1.55 -7.54 16 25 O -0.59 -16.85 17.18 -3.88 -0.07 -16.92 16 26 C -0.12 -2.68 9.53 22.63 0.22 -2.47 16 27 C 0.09 3.06 6.54 86.57 0.57 3.62 16 28 C 0.16 7.12 5.54 86.57 0.48 7.60 16 29 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 2.82 7.94 -2.39 -0.02 2.80 16 32 H 0.09 2.95 6.99 -2.39 -0.02 2.93 16 33 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.12 2.42 7.90 -2.39 -0.02 2.40 16 35 H 0.11 2.56 7.73 -2.38 -0.02 2.54 16 36 H 0.07 1.58 7.62 -2.39 -0.02 1.56 16 37 H 0.08 1.63 7.60 -2.39 -0.02 1.61 16 38 H 0.14 2.24 6.28 -2.91 -0.02 2.22 16 39 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 40 H 0.17 0.11 6.40 -2.91 -0.02 0.09 16 41 H 0.42 -0.08 6.86 -92.71 -0.64 -0.71 16 42 H 0.41 2.11 8.93 -92.71 -0.83 1.28 16 43 H 0.12 3.25 7.65 -2.91 -0.02 3.23 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.11 2.81 5.91 -2.39 -0.01 2.80 16 46 H 0.00 0.02 8.14 -2.38 -0.02 0.01 16 47 H 0.07 3.74 5.98 -2.39 -0.01 3.73 16 Total: -1.00 -75.88 384.85 0.86 -75.02 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -0.43 Total: 13.44 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 6.09 Total: 26.40 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -5.78 Total: -113.65 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.05 Total: -46.42 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.88 0.86 -75.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267598312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.478 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds