Wall clock time and date at job start Wed Apr 1 2020 04:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47121 * 269.99650 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00212 * 3 2 1 6 6 H 1.48501 * 109.46725 * 150.00196 * 3 2 1 7 7 C 1.37882 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46956 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99935 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.39498 * 120.00303 * 185.27041 * 13 11 10 15 15 C 1.38828 * 120.08312 * 34.94724 * 14 13 11 16 16 C 1.37972 * 120.14873 * 179.70610 * 15 14 13 17 17 C 1.39132 * 120.33250 * 0.54774 * 16 15 14 18 18 N 1.39923 * 119.91235 * 179.72002 * 17 16 15 19 19 C 1.47010 * 110.99827 * 359.73622 * 18 17 16 20 20 C 1.53097 * 109.29302 * 182.36957 * 19 18 17 21 21 O 1.43021 * 109.25407 * 303.21366 * 20 19 18 22 22 C 1.43010 * 113.77749 * 58.60368 * 21 20 19 23 23 C 1.47015 * 111.00023 * 123.36454 * 18 17 16 24 24 C 1.38436 * 120.17553 * 359.45266 * 17 16 15 25 25 C 1.39661 * 119.84365 * 0.26859 * 24 17 16 26 26 C 1.47537 * 120.16310 * 179.97438 * 25 24 17 27 27 N 1.34768 * 120.00071 * 355.01892 * 26 25 24 28 28 O 1.21589 * 119.99542 * 175.01957 * 26 25 24 29 29 H 0.97001 * 120.00287 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46976 * 59.99928 * 9 7 2 31 31 H 1.08994 * 109.46907 * 300.00036 * 9 7 2 32 32 H 1.09008 * 109.47074 * 60.00309 * 10 9 7 33 33 H 1.08996 * 109.47665 * 300.00475 * 10 9 7 34 34 H 0.97006 * 120.00146 * 5.26325 * 13 11 10 35 35 H 1.07995 * 119.92698 * 359.97438 * 15 14 13 36 36 H 1.07999 * 119.82852 * 180.27661 * 16 15 14 37 37 H 1.09005 * 109.50319 * 302.31813 * 19 18 17 38 38 H 1.08994 * 109.51316 * 62.41044 * 19 18 17 39 39 H 1.09003 * 109.51095 * 63.10313 * 20 19 18 40 40 H 1.09009 * 109.50746 * 183.23384 * 20 19 18 41 41 H 1.08998 * 109.50850 * 181.41675 * 22 21 20 42 42 H 1.09000 * 109.54288 * 61.30681 * 22 21 20 43 43 H 1.09002 * 109.50565 * 297.54984 * 23 18 17 44 44 H 1.09007 * 109.50702 * 57.62935 * 23 18 17 45 45 H 1.08007 * 120.07566 * 180.25025 * 24 17 16 46 46 H 0.97007 * 120.00118 * 0.02562 * 27 26 25 47 47 H 0.97000 * 120.00611 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9671 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 1.4724 -7.3400 -0.1086 15 6 0.3305 -7.4168 -0.8944 16 6 -0.3526 -8.6101 -1.0094 17 6 0.0900 -9.7413 -0.3309 18 7 -0.6128 -10.9454 -0.4492 19 6 -1.7813 -10.7893 -1.3275 20 6 -2.5531 -12.1103 -1.3821 21 8 -1.6770 -13.1505 -1.8249 22 6 -0.5284 -13.3304 -0.9921 23 6 0.2635 -12.0214 -0.9345 24 6 1.2271 -9.6800 0.4564 25 6 1.9275 -8.4774 0.5734 26 6 3.1398 -8.4041 1.4110 27 7 3.5175 -9.4697 2.1445 28 8 3.7980 -7.3822 1.4395 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8893 34 1 3.1324 -6.1362 0.0789 35 1 -0.0215 -6.5417 -1.4203 36 1 -1.2378 -8.6651 -1.6256 37 1 -2.4291 -10.0052 -0.9354 38 1 -1.4496 -10.5198 -2.3302 39 1 -2.9314 -12.3523 -0.3889 40 1 -3.3876 -12.0159 -2.0771 41 1 0.1009 -14.1187 -1.4052 42 1 -0.8465 -13.6077 0.0129 43 1 0.6281 -11.7724 -1.9311 44 1 1.1089 -12.1363 -0.2560 45 1 1.5715 -10.5602 0.9791 46 1 2.9925 -10.2851 2.1215 47 1 4.3148 -9.4217 2.6950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292381781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:15 Heat of formation + Delta-G solvation = -78.400996 kcal Electronic energy + Delta-G solvation = -30108.839906 eV Core-core repulsion = 25870.760309 eV Total energy + Delta-G solvation = -4238.079597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18353 -40.16662 -39.17099 -38.18300 -36.00553 -34.48991 -33.50317 -33.45941 -32.10241 -31.10310 -30.88656 -29.53162 -26.86232 -25.58509 -25.27988 -23.59917 -22.77914 -21.58571 -21.34859 -20.35393 -19.56702 -18.55982 -17.42934 -17.11803 -16.97858 -16.77462 -16.46025 -15.91200 -15.61869 -15.53795 -15.46014 -15.11746 -14.87316 -14.74639 -14.57918 -14.37608 -14.12782 -13.59487 -13.31188 -13.00003 -12.92343 -12.54390 -12.27743 -12.25258 -12.15884 -11.89784 -11.61808 -11.17206 -11.10112 -10.92431 -10.74287 -10.58280 -10.22345 -10.03528 -10.00372 -9.95033 -9.68231 -9.31477 -9.28942 -9.13146 -9.02664 -8.31095 -7.67738 -5.94968 -3.99011 0.61979 1.13596 2.62590 3.05990 3.15314 3.26968 3.34990 3.39150 3.39770 3.41993 3.45881 3.75705 4.32432 4.39908 4.47087 4.48368 4.49349 4.65013 4.70957 4.78931 4.94466 4.99540 5.09744 5.13740 5.20422 5.27087 5.31623 5.40157 5.45210 5.46317 5.65213 5.73686 5.89228 6.09978 6.22261 6.28781 6.29716 6.47940 6.53778 6.64015 6.70936 6.88637 6.98771 7.04362 7.75094 7.78633 7.85818 8.01039 8.07231 8.38894 8.64000 9.08872 9.64407 11.16028 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.002199 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.843695 B =12728.345654 C =14208.183919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.517 6.517 13 N -0.673 5.673 14 C 0.210 3.790 15 C -0.108 4.108 16 C -0.113 4.113 17 C 0.070 3.930 18 N -0.484 5.484 19 C 0.010 3.990 20 C 0.063 3.937 21 O -0.385 6.385 22 C 0.063 3.937 23 C 0.018 3.982 24 C -0.083 4.083 25 C -0.164 4.164 26 C 0.572 3.428 27 N -0.850 5.850 28 O -0.539 6.539 29 H 0.261 0.739 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.422 0.578 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.129 0.871 46 H 0.400 0.600 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -31.648 -0.961 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.391 6.391 13 N -0.324 5.324 14 C 0.111 3.889 15 C -0.129 4.129 16 C -0.134 4.134 17 C -0.027 4.027 18 N -0.201 5.201 19 C -0.117 4.117 20 C -0.014 4.014 21 O -0.303 6.303 22 C -0.014 4.014 23 C -0.108 4.108 24 C -0.104 4.104 25 C -0.171 4.171 26 C 0.359 3.641 27 N -0.414 5.414 28 O -0.416 6.416 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.265 0.735 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.146 0.854 46 H 0.229 0.771 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.611 -30.993 -0.766 31.009 hybrid contribution 1.216 0.896 -0.046 1.511 sum 1.827 -30.097 -0.811 30.164 Atomic orbital electron populations 1.69994 1.06049 1.26582 1.50265 1.25024 0.94839 0.99244 0.95301 0.86576 0.79802 0.83441 0.78054 1.20672 1.21236 1.19857 1.21218 0.93011 0.90920 1.51312 0.92501 1.18917 0.93120 0.89318 0.98658 1.21908 1.00829 0.91034 1.03086 1.21901 0.88735 0.85619 0.73720 1.90670 1.14341 1.87439 1.46650 1.44327 1.12424 1.03514 1.72112 1.17777 0.93003 0.85520 0.92626 1.21156 0.95056 0.98532 0.98126 1.21392 1.00818 0.92331 0.98847 1.18626 0.94697 0.90373 0.99052 1.59512 1.07988 1.04476 1.48091 1.23009 0.92955 0.99772 0.95969 1.22726 0.92252 0.85477 1.00926 1.88007 1.35119 1.54918 1.52262 1.22701 0.87244 0.95831 0.95672 1.22979 0.95995 0.91581 1.00288 1.20536 0.94598 0.96461 0.98835 1.19446 0.99341 0.94905 1.03394 1.18074 0.84000 0.83018 0.78999 1.43677 1.31925 1.16295 1.49503 1.90687 1.55328 1.30041 1.65589 0.92964 0.95759 0.95730 0.89691 0.89741 0.73470 0.83607 0.84811 0.88518 0.92471 0.91979 0.87898 0.88076 0.92020 0.92820 0.89096 0.85369 0.77051 0.76378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 11 C 0.51 10.33 7.55 -10.99 -0.08 10.25 16 12 O -0.52 -12.03 13.77 5.56 0.08 -11.95 16 13 N -0.67 -11.28 4.69 -9.65 -0.05 -11.33 16 14 C 0.21 3.18 6.26 -83.41 -0.52 2.66 16 15 C -0.11 -1.57 8.63 -39.46 -0.34 -1.91 16 16 C -0.11 -1.29 8.80 -39.35 -0.35 -1.64 16 17 C 0.07 0.70 5.64 -83.76 -0.47 0.23 16 18 N -0.48 -3.96 4.78 -170.81 -0.82 -4.78 16 19 C 0.01 0.08 4.33 -3.71 -0.02 0.06 16 20 C 0.06 0.41 7.01 37.21 0.26 0.67 16 21 O -0.38 -3.08 10.82 -35.23 -0.38 -3.46 16 22 C 0.06 0.36 7.01 37.21 0.26 0.62 16 23 C 0.02 0.11 5.41 -3.71 -0.02 0.09 16 24 C -0.08 -0.79 8.67 -38.98 -0.34 -1.12 16 25 C -0.16 -2.01 5.89 -104.83 -0.62 -2.63 16 26 C 0.57 6.83 8.03 -12.47 -0.10 6.73 16 27 N -0.85 -5.98 8.82 30.46 0.27 -5.72 16 28 O -0.54 -8.27 14.71 5.29 0.08 -8.19 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 31 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.08 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.42 6.65 6.30 -40.82 -0.26 6.39 16 35 H 0.15 2.39 6.52 -52.49 -0.34 2.05 16 36 H 0.13 1.28 5.78 -52.49 -0.30 0.98 16 37 H 0.10 0.69 7.24 -51.93 -0.38 0.31 16 38 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.42 6.85 -51.93 -0.36 0.07 16 45 H 0.13 0.78 5.56 -52.48 -0.29 0.49 16 46 H 0.40 1.67 6.88 -40.82 -0.28 1.39 16 47 H 0.41 2.32 8.93 -40.82 -0.36 1.95 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -36.88 380.26 -8.70 -45.58 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.30 Total: 5.93 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.02 Total: -1.87 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.14 Total: -48.72 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.23 Total: -23.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.88 -8.70 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292381781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.818 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds