Wall clock time and date at job start Wed Apr 1 2020 04:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47121 * 269.99650 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00212 * 3 2 1 6 6 H 1.48501 * 109.46725 * 150.00196 * 3 2 1 7 7 C 1.37882 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46956 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99935 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.39498 * 120.00303 * 185.27041 * 13 11 10 15 15 C 1.38828 * 120.08312 * 34.94724 * 14 13 11 16 16 C 1.37972 * 120.14873 * 179.70610 * 15 14 13 17 17 C 1.39132 * 120.33250 * 0.54774 * 16 15 14 18 18 N 1.39923 * 119.91235 * 179.72002 * 17 16 15 19 19 C 1.47010 * 110.99827 * 359.73622 * 18 17 16 20 20 C 1.53097 * 109.29302 * 182.36957 * 19 18 17 21 21 O 1.43021 * 109.25407 * 303.21366 * 20 19 18 22 22 C 1.43010 * 113.77749 * 58.60368 * 21 20 19 23 23 C 1.47015 * 111.00023 * 123.36454 * 18 17 16 24 24 C 1.38436 * 120.17553 * 359.45266 * 17 16 15 25 25 C 1.39661 * 119.84365 * 0.26859 * 24 17 16 26 26 C 1.47537 * 120.16310 * 179.97438 * 25 24 17 27 27 N 1.34768 * 120.00071 * 355.01892 * 26 25 24 28 28 O 1.21589 * 119.99542 * 175.01957 * 26 25 24 29 29 H 0.97001 * 120.00287 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46976 * 59.99928 * 9 7 2 31 31 H 1.08994 * 109.46907 * 300.00036 * 9 7 2 32 32 H 1.09008 * 109.47074 * 60.00309 * 10 9 7 33 33 H 1.08996 * 109.47665 * 300.00475 * 10 9 7 34 34 H 0.97006 * 120.00146 * 5.26325 * 13 11 10 35 35 H 1.07995 * 119.92698 * 359.97438 * 15 14 13 36 36 H 1.07999 * 119.82852 * 180.27661 * 16 15 14 37 37 H 1.09005 * 109.50319 * 302.31813 * 19 18 17 38 38 H 1.08994 * 109.51316 * 62.41044 * 19 18 17 39 39 H 1.09003 * 109.51095 * 63.10313 * 20 19 18 40 40 H 1.09009 * 109.50746 * 183.23384 * 20 19 18 41 41 H 1.08998 * 109.50850 * 181.41675 * 22 21 20 42 42 H 1.09000 * 109.54288 * 61.30681 * 22 21 20 43 43 H 1.09002 * 109.50565 * 297.54984 * 23 18 17 44 44 H 1.09007 * 109.50702 * 57.62935 * 23 18 17 45 45 H 1.08007 * 120.07566 * 180.25025 * 24 17 16 46 46 H 0.97007 * 120.00118 * 0.02562 * 27 26 25 47 47 H 0.97000 * 120.00611 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9671 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 1.4724 -7.3400 -0.1086 15 6 0.3305 -7.4168 -0.8944 16 6 -0.3526 -8.6101 -1.0094 17 6 0.0900 -9.7413 -0.3309 18 7 -0.6128 -10.9454 -0.4492 19 6 -1.7813 -10.7893 -1.3275 20 6 -2.5531 -12.1103 -1.3821 21 8 -1.6770 -13.1505 -1.8249 22 6 -0.5284 -13.3304 -0.9921 23 6 0.2635 -12.0214 -0.9345 24 6 1.2271 -9.6800 0.4564 25 6 1.9275 -8.4774 0.5734 26 6 3.1398 -8.4041 1.4110 27 7 3.5175 -9.4697 2.1445 28 8 3.7980 -7.3822 1.4395 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8893 34 1 3.1324 -6.1362 0.0789 35 1 -0.0215 -6.5417 -1.4203 36 1 -1.2378 -8.6651 -1.6256 37 1 -2.4291 -10.0052 -0.9354 38 1 -1.4496 -10.5198 -2.3302 39 1 -2.9314 -12.3523 -0.3889 40 1 -3.3876 -12.0159 -2.0771 41 1 0.1009 -14.1187 -1.4052 42 1 -0.8465 -13.6077 0.0129 43 1 0.6281 -11.7724 -1.9311 44 1 1.1089 -12.1363 -0.2560 45 1 1.5715 -10.5602 0.9791 46 1 2.9925 -10.2851 2.1215 47 1 4.3148 -9.4217 2.6950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292381781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:14 Heat of formation + Delta-G solvation = -108.196757 kcal Electronic energy + Delta-G solvation = -30110.131947 eV Core-core repulsion = 25870.760309 eV Total energy + Delta-G solvation = -4239.371638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16425 -41.03748 -40.38893 -39.03372 -36.97275 -35.60892 -35.46428 -34.53724 -33.05785 -32.73341 -31.68421 -30.53326 -28.13613 -27.00313 -26.08622 -24.56224 -24.02467 -22.90366 -22.25967 -21.22837 -20.99679 -19.39764 -18.88391 -18.34889 -17.99250 -17.66164 -17.46236 -17.05844 -16.82532 -16.50171 -16.23384 -16.18106 -16.01477 -15.85014 -15.64060 -15.45887 -15.07742 -14.81950 -14.60077 -14.31782 -14.15194 -13.80843 -13.63818 -13.35568 -13.25090 -12.93336 -12.83681 -12.50430 -12.44339 -12.26291 -11.97611 -11.75570 -11.68955 -11.62154 -11.34553 -11.17375 -10.85086 -10.78156 -10.69301 -10.58124 -10.18754 -10.13278 -8.65457 -8.19897 -6.33833 -0.34619 0.15385 1.40703 1.43739 1.53828 1.54858 1.74132 2.09080 2.39241 2.42624 2.49973 2.79301 2.94778 3.12871 3.61374 3.69844 3.79996 3.86065 3.89942 4.03728 4.15734 4.18765 4.22367 4.31435 4.36468 4.42613 4.46658 4.52575 4.63672 4.68886 4.75593 4.80480 4.90899 4.95766 4.98501 5.08016 5.11501 5.30421 5.46204 5.58437 5.61501 5.80937 5.81977 5.84323 6.07671 6.15331 6.16971 6.31833 6.45689 6.82935 7.11261 7.26250 7.35925 8.92773 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.002199 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.843695 B =12728.345654 C =14208.183919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.046 3.954 10 C -0.119 4.119 11 C 0.512 3.488 12 O -0.560 6.560 13 N -0.658 5.658 14 C 0.167 3.833 15 C -0.126 4.126 16 C -0.116 4.116 17 C 0.082 3.918 18 N -0.483 5.483 19 C 0.006 3.994 20 C 0.065 3.935 21 O -0.405 6.405 22 C 0.060 3.940 23 C 0.015 3.985 24 C -0.068 4.068 25 C -0.158 4.158 26 C 0.567 3.433 27 N -0.821 5.821 28 O -0.579 6.579 29 H 0.264 0.736 30 H -0.012 1.012 31 H -0.016 1.016 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.427 0.573 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.116 0.884 45 H 0.173 0.827 46 H 0.417 0.583 47 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -34.447 -0.234 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.008 3.992 10 C -0.158 4.158 11 C 0.302 3.698 12 O -0.438 6.438 13 N -0.309 5.309 14 C 0.069 3.931 15 C -0.147 4.147 16 C -0.137 4.137 17 C -0.015 4.015 18 N -0.200 5.200 19 C -0.121 4.121 20 C -0.011 4.011 21 O -0.323 6.323 22 C -0.016 4.016 23 C -0.110 4.110 24 C -0.089 4.089 25 C -0.165 4.165 26 C 0.354 3.646 27 N -0.386 5.386 28 O -0.460 6.460 29 H 0.072 0.928 30 H 0.007 0.993 31 H 0.002 0.998 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.134 0.866 45 H 0.190 0.810 46 H 0.250 0.750 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.501 -33.915 -0.024 34.007 hybrid contribution 0.559 1.501 -0.263 1.623 sum 3.060 -32.414 -0.287 32.559 Atomic orbital electron populations 1.70168 1.08215 1.27868 1.51306 1.26132 0.95784 1.03900 0.94543 0.85302 0.78590 0.77643 0.78598 1.19533 1.20970 1.18168 1.21685 0.93956 0.91606 1.51049 0.90825 1.18673 0.93497 0.92021 0.95001 1.21663 0.99551 0.89739 1.04869 1.21572 0.88057 0.86467 0.73700 1.90649 1.15889 1.88051 1.49166 1.43943 1.12452 1.03268 1.71233 1.18022 0.94128 0.85708 0.95194 1.20993 0.95905 0.98774 0.99036 1.21530 1.01077 0.91892 0.99195 1.18810 0.94387 0.90656 0.97692 1.59553 1.08236 1.03823 1.48339 1.23074 0.92852 1.00551 0.95610 1.22780 0.92266 0.84541 1.01560 1.87988 1.35952 1.55198 1.53205 1.22880 0.86803 0.95912 0.96031 1.23131 0.96457 0.90938 1.00496 1.20915 0.93472 0.96678 0.97846 1.19577 0.99570 0.94652 1.02663 1.18097 0.83633 0.83512 0.79386 1.43432 1.31972 1.15510 1.47674 1.90666 1.56459 1.31836 1.67025 0.92769 0.99329 0.99758 0.88214 0.87478 0.72892 0.86680 0.83495 0.88599 0.92807 0.91565 0.86673 0.86150 0.91260 0.93532 0.86628 0.81011 0.74987 0.75122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.27 13.29 21.45 0.28 -59.98 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.98 45.45 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.90 16 8 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.05 2.64 4.26 29.85 0.13 2.77 16 10 C -0.12 -5.25 5.64 29.85 0.17 -5.08 16 11 C 0.51 22.05 7.55 87.66 0.66 22.71 16 12 O -0.56 -28.26 13.77 -3.04 -0.04 -28.30 16 13 N -0.66 -23.02 4.69 -302.84 -1.42 -24.44 16 14 C 0.17 5.21 6.26 38.54 0.24 5.45 16 15 C -0.13 -3.90 8.63 22.35 0.19 -3.70 16 16 C -0.12 -2.66 8.80 22.42 0.20 -2.47 16 17 C 0.08 1.49 5.64 38.11 0.21 1.70 16 18 N -0.48 -6.59 4.78 -694.31 -3.32 -9.90 16 19 C 0.01 0.08 4.33 86.31 0.37 0.46 16 20 C 0.07 0.72 7.01 72.01 0.50 1.22 16 21 O -0.40 -5.53 10.82 -148.98 -1.61 -7.14 16 22 C 0.06 0.49 7.01 72.01 0.50 1.00 16 23 C 0.02 0.14 5.41 86.31 0.47 0.60 16 24 C -0.07 -1.08 8.67 22.66 0.20 -0.88 16 25 C -0.16 -3.67 5.89 -20.00 -0.12 -3.79 16 26 C 0.57 12.49 8.03 86.70 0.70 13.18 16 27 N -0.82 -8.71 8.82 -175.82 -1.55 -10.26 16 28 O -0.58 -17.38 14.71 -4.00 -0.06 -17.44 16 29 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 30 H -0.01 -0.75 8.10 -2.38 -0.02 -0.77 16 31 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 32 H 0.10 4.09 8.14 -2.38 -0.02 4.07 16 33 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 34 H 0.43 13.79 6.30 -92.70 -0.58 13.20 16 35 H 0.12 4.22 6.52 -2.91 -0.02 4.20 16 36 H 0.15 2.86 5.78 -2.91 -0.02 2.84 16 37 H 0.10 1.27 7.24 -2.38 -0.02 1.25 16 38 H 0.05 0.76 7.52 -2.39 -0.02 0.74 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.12 0.48 6.85 -2.38 -0.02 0.46 16 45 H 0.17 1.13 5.56 -2.91 -0.02 1.12 16 46 H 0.42 1.48 6.88 -92.70 -0.64 0.84 16 47 H 0.42 3.36 8.93 -92.71 -0.83 2.54 16 Total: -1.00 -85.57 380.26 -1.57 -87.14 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -1.00 Total: 21.46 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.12 Total: 1.38 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -6.00 Total: -104.58 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -1.71 Total: -52.88 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -85.57 -1.57 -87.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292381781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.057 kcal (2) G-P(sol) polarization free energy of solvation -85.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds