Wall clock time and date at job start Wed Apr 1 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47203 * 299.99995 * 3 2 1 6 6 H 1.48498 * 109.46775 * 60.00238 * 3 2 1 7 7 C 1.37876 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46699 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46866 * 179.97438 * 10 9 7 12 12 S 1.81393 * 109.46920 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54750 * 63.47979 * 12 11 10 14 14 O 1.42102 * 110.54200 * 286.72403 * 12 11 10 15 15 N 1.65608 * 104.44713 * 175.10396 * 12 11 10 16 16 C 1.46492 * 119.99993 * 65.59452 * 15 12 11 17 17 H 1.08997 * 109.47535 * 358.55564 * 16 15 12 18 18 C 1.53001 * 109.47061 * 238.54935 * 16 15 12 19 19 C 1.53006 * 117.49716 * 134.28687 * 18 16 15 20 20 C 1.53002 * 117.49567 * 65.63216 * 18 16 15 21 21 C 1.52999 * 109.47130 * 118.55254 * 16 15 12 22 22 C 1.52999 * 109.82421 * 184.42906 * 21 16 15 23 23 O 1.42904 * 109.47277 * 179.97438 * 22 21 16 24 24 C 1.54379 * 109.83086 * 305.41162 * 21 16 15 25 25 C 1.55301 * 102.25286 * 98.15617 * 24 21 16 26 26 C 1.54951 * 100.94261 * 34.13409 * 25 24 21 27 27 O 1.43244 * 109.83188 * 63.54680 * 21 16 15 28 28 H 0.97006 * 120.00193 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47147 * 60.00183 * 9 7 2 30 30 H 1.08997 * 109.46964 * 300.00210 * 9 7 2 31 31 H 1.09008 * 109.46971 * 60.00162 * 10 9 7 32 32 H 1.08997 * 109.47702 * 299.99902 * 10 9 7 33 33 H 1.08998 * 109.46947 * 60.00348 * 11 10 9 34 34 H 1.08997 * 109.46998 * 300.00477 * 11 10 9 35 35 H 0.97004 * 119.99519 * 245.59291 * 15 12 11 36 36 H 1.08992 * 115.55402 * 279.95943 * 18 16 15 37 37 H 1.08997 * 117.49913 * 0.02562 * 19 18 16 38 38 H 1.08997 * 117.49450 * 145.02324 * 19 18 16 39 39 H 1.09002 * 117.49836 * 214.97798 * 20 18 16 40 40 H 1.08998 * 117.50201 * 359.97092 * 20 18 16 41 41 H 1.09000 * 109.47451 * 299.99955 * 22 21 16 42 42 H 1.08998 * 109.47287 * 60.00531 * 22 21 16 43 43 H 0.96704 * 114.00236 * 180.02562 * 23 22 21 44 44 H 1.09008 * 110.84913 * 216.34816 * 24 21 16 45 45 H 1.09000 * 110.84971 * 339.96223 * 24 21 16 46 46 H 1.08999 * 111.12627 * 276.21438 * 25 24 21 47 47 H 1.09003 * 111.16341 * 152.06747 * 25 24 21 48 48 H 1.08999 * 110.30890 * 204.63859 * 26 25 24 49 49 H 1.09006 * 110.30869 * 82.47228 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 16 2.6589 -6.3658 -0.0037 13 8 3.4346 -6.3593 1.1869 14 8 3.2741 -6.4955 -1.2782 15 7 1.7129 -7.7183 0.1326 16 6 0.7907 -8.0790 -0.9470 17 1 0.8476 -7.3316 -1.7384 18 6 -0.6372 -8.1355 -0.4004 19 6 -1.7353 -7.4562 -1.2212 20 6 -1.2583 -6.8259 0.0896 21 6 1.1757 -9.4484 -1.5104 22 6 0.2875 -9.7842 -2.7100 23 8 0.6536 -11.0638 -3.2304 24 6 2.6584 -9.4399 -1.9401 25 6 3.3591 -10.0963 -0.7195 26 6 2.2786 -11.1125 -0.2714 27 8 1.0241 -10.4504 -0.4980 28 1 -0.4851 0.8401 -0.0004 29 1 0.6246 -2.5563 -0.8920 30 1 0.6239 -2.5575 0.8880 31 1 2.8719 -3.6051 0.8874 32 1 2.8719 -3.6036 -0.8926 33 1 0.8532 -5.0443 -0.8931 34 1 0.8537 -5.0454 0.8868 35 1 1.7696 -8.2716 0.9273 36 1 -0.9002 -9.0482 0.1341 37 1 -1.4405 -6.9694 -2.1509 38 1 -2.7207 -7.9219 -1.2264 39 1 -1.9303 -6.8772 0.9463 40 1 -0.6496 -5.9242 0.0230 41 1 -0.7559 -9.8047 -2.3953 42 1 0.4191 -9.0270 -3.4829 43 1 0.1307 -11.3418 -3.9949 44 1 2.8051 -10.0380 -2.8396 45 1 3.0133 -8.4201 -2.0891 46 1 3.5562 -9.3624 0.0619 47 1 4.2761 -10.6042 -1.0183 48 1 2.3963 -11.3483 0.7862 49 1 2.3410 -12.0204 -0.8715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339139907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:42 Heat of formation + Delta-G solvation = -153.904028 kcal Electronic energy + Delta-G solvation = -30789.045643 eV Core-core repulsion = 26650.843190 eV Total energy + Delta-G solvation = -4138.202454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57830 -37.70688 -36.95382 -36.60727 -35.84461 -34.75364 -34.25707 -32.23430 -32.02423 -31.07979 -27.89104 -26.00210 -25.60057 -23.82864 -22.45250 -22.24706 -20.99169 -20.76354 -20.17840 -19.26493 -17.95774 -17.48902 -16.79124 -16.68337 -16.41585 -16.10845 -15.77742 -15.53361 -15.04916 -14.67000 -14.55707 -14.47025 -14.28236 -13.87458 -13.42419 -13.06990 -12.73716 -12.65614 -12.44774 -12.32801 -12.09622 -11.98211 -11.84749 -11.78476 -11.65987 -11.55039 -11.44093 -11.27284 -11.12355 -10.96246 -10.82920 -10.78552 -10.58695 -10.39844 -10.32805 -10.18201 -9.99811 -9.91417 -9.50828 -9.29083 -9.08193 -8.43653 -6.08334 -4.11363 0.38088 2.69899 3.27564 3.35312 3.40057 3.51915 3.66551 3.84269 3.89697 4.26596 4.33434 4.40379 4.53881 4.58157 4.71358 4.76431 4.80212 4.86809 4.96404 5.03589 5.07493 5.11757 5.17416 5.26150 5.27505 5.28419 5.52266 5.56517 5.59942 5.66542 5.72271 5.73886 5.81418 5.88412 5.99784 6.05904 6.12685 6.14015 6.21725 6.39251 6.82139 6.88582 6.92156 7.35633 7.53769 7.63236 7.89570 8.29862 8.94988 9.53617 11.02804 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.002900 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.908131 B = 9652.231741 C =10394.251871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.613 4.613 12 S 2.593 3.407 13 O -0.959 6.959 14 O -0.959 6.959 15 N -1.108 6.108 16 C 0.187 3.813 17 H 0.097 0.903 18 C -0.164 4.164 19 C -0.177 4.177 20 C -0.184 4.184 21 C 0.111 3.889 22 C 0.074 3.926 23 O -0.565 6.565 24 C -0.157 4.157 25 C -0.154 4.154 26 C 0.056 3.944 27 O -0.360 6.360 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.419 0.581 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.377 0.623 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -23.483 -4.160 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.144 4.144 11 C -0.745 4.745 12 S 2.689 3.311 13 O -0.950 6.950 14 O -0.949 6.949 15 N -0.864 5.864 16 C 0.079 3.921 17 H 0.115 0.885 18 C -0.183 4.183 19 C -0.214 4.214 20 C -0.221 4.221 21 C 0.070 3.930 22 C -0.005 4.005 23 O -0.370 6.370 24 C -0.194 4.194 25 C -0.192 4.192 26 C -0.021 4.021 27 O -0.279 6.279 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.254 0.746 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.224 0.776 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.005 -23.294 -3.776 23.619 hybrid contribution -0.632 0.952 -0.143 1.152 sum -1.638 -22.342 -3.919 22.742 Atomic orbital electron populations 1.69963 1.06071 1.26682 1.50624 1.25014 0.94885 0.99369 0.95085 0.86510 0.80213 0.83534 0.77634 1.19592 1.20935 1.20934 1.21284 0.93283 0.90870 1.51005 0.92335 1.19061 0.93484 0.90418 0.97743 1.21506 0.99372 0.91547 1.01984 1.30733 1.16444 1.16144 1.11172 1.05498 0.75789 0.75293 0.74490 1.93588 1.67158 1.86077 1.48145 1.93534 1.73541 1.84939 1.42898 1.55673 1.58297 1.43745 1.28719 1.20462 0.87439 0.95636 0.88592 0.88476 1.22613 0.92493 0.98223 1.05013 1.23040 0.98560 1.03943 0.95894 1.23245 1.03907 0.96817 0.98116 1.22301 0.95700 0.87958 0.87067 1.22432 0.98236 0.85357 0.94487 1.86473 1.63557 1.35835 1.51115 1.23345 0.92672 1.04626 0.98779 1.23248 0.98935 0.98637 0.98335 1.23329 0.82858 0.95326 1.00577 1.88371 1.31584 1.50797 1.57139 0.92944 0.96131 0.96061 0.91439 0.91699 0.85507 0.84881 0.74649 0.86351 0.88563 0.88508 0.88360 0.87765 0.92224 0.92555 0.77590 0.89777 0.87381 0.90794 0.90174 0.90168 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 11 C -0.61 -9.08 4.71 37.16 0.18 -8.90 16 12 S 2.59 36.73 5.32 -107.50 -0.57 36.16 16 13 O -0.96 -16.56 18.08 -57.54 -1.04 -17.60 16 14 O -0.96 -15.34 15.16 -57.54 -0.87 -16.21 16 15 N -1.11 -12.04 3.43 -4.90 -0.02 -12.06 16 16 C 0.19 1.87 1.58 -67.93 -0.11 1.76 16 17 H 0.10 0.93 7.49 -51.93 -0.39 0.54 16 18 C -0.16 -1.48 4.22 -90.62 -0.38 -1.87 16 19 C -0.18 -1.48 9.89 -26.69 -0.26 -1.75 16 20 C -0.18 -1.79 10.22 -26.69 -0.27 -2.06 16 21 C 0.11 1.14 0.54 -89.90 -0.05 1.09 16 22 C 0.07 0.64 6.00 37.16 0.22 0.86 16 23 O -0.56 -4.95 12.67 -44.84 -0.57 -5.52 16 24 C -0.16 -1.75 5.64 -24.79 -0.14 -1.89 16 25 C -0.15 -1.59 6.76 -24.48 -0.17 -1.75 16 26 C 0.06 0.54 7.78 38.19 0.30 0.84 16 27 O -0.36 -3.94 9.62 -44.84 -0.43 -4.37 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.13 1.64 7.37 -51.93 -0.38 1.26 16 34 H 0.13 1.77 7.28 -51.93 -0.38 1.39 16 35 H 0.42 4.12 8.65 -34.47 -0.30 3.82 16 36 H 0.12 1.12 7.51 -51.93 -0.39 0.73 16 37 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.11 4.59 -51.93 -0.24 0.87 16 41 H 0.06 0.47 7.13 -51.93 -0.37 0.10 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 1.61 9.12 45.56 0.42 2.03 16 44 H 0.08 0.92 7.22 -51.92 -0.37 0.54 16 45 H 0.11 1.37 5.11 -51.93 -0.27 1.11 16 46 H 0.07 0.80 7.04 -51.93 -0.37 0.44 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -34.86 394.53 -10.44 -45.30 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.23 Total: 6.07 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -1.37 Total: -28.61 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.72 Total: -37.52 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -2.91 Total: -43.70 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 36.73 SS G_CDS: -0.57 Total: 36.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.86 -10.44 -45.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339139907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.603 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds