Wall clock time and date at job start Wed Apr 1 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47203 * 299.99995 * 3 2 1 6 6 H 1.48498 * 109.46775 * 60.00238 * 3 2 1 7 7 C 1.37876 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46699 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46866 * 179.97438 * 10 9 7 12 12 S 1.81393 * 109.46920 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54750 * 63.47979 * 12 11 10 14 14 O 1.42102 * 110.54200 * 286.72403 * 12 11 10 15 15 N 1.65608 * 104.44713 * 175.10396 * 12 11 10 16 16 C 1.46492 * 119.99993 * 65.59452 * 15 12 11 17 17 H 1.08997 * 109.47535 * 358.55564 * 16 15 12 18 18 C 1.53001 * 109.47061 * 238.54935 * 16 15 12 19 19 C 1.53006 * 117.49716 * 134.28687 * 18 16 15 20 20 C 1.53002 * 117.49567 * 65.63216 * 18 16 15 21 21 C 1.52999 * 109.47130 * 118.55254 * 16 15 12 22 22 C 1.52999 * 109.82421 * 184.42906 * 21 16 15 23 23 O 1.42904 * 109.47277 * 179.97438 * 22 21 16 24 24 C 1.54379 * 109.83086 * 305.41162 * 21 16 15 25 25 C 1.55301 * 102.25286 * 98.15617 * 24 21 16 26 26 C 1.54951 * 100.94261 * 34.13409 * 25 24 21 27 27 O 1.43244 * 109.83188 * 63.54680 * 21 16 15 28 28 H 0.97006 * 120.00193 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47147 * 60.00183 * 9 7 2 30 30 H 1.08997 * 109.46964 * 300.00210 * 9 7 2 31 31 H 1.09008 * 109.46971 * 60.00162 * 10 9 7 32 32 H 1.08997 * 109.47702 * 299.99902 * 10 9 7 33 33 H 1.08998 * 109.46947 * 60.00348 * 11 10 9 34 34 H 1.08997 * 109.46998 * 300.00477 * 11 10 9 35 35 H 0.97004 * 119.99519 * 245.59291 * 15 12 11 36 36 H 1.08992 * 115.55402 * 279.95943 * 18 16 15 37 37 H 1.08997 * 117.49913 * 0.02562 * 19 18 16 38 38 H 1.08997 * 117.49450 * 145.02324 * 19 18 16 39 39 H 1.09002 * 117.49836 * 214.97798 * 20 18 16 40 40 H 1.08998 * 117.50201 * 359.97092 * 20 18 16 41 41 H 1.09000 * 109.47451 * 299.99955 * 22 21 16 42 42 H 1.08998 * 109.47287 * 60.00531 * 22 21 16 43 43 H 0.96704 * 114.00236 * 180.02562 * 23 22 21 44 44 H 1.09008 * 110.84913 * 216.34816 * 24 21 16 45 45 H 1.09000 * 110.84971 * 339.96223 * 24 21 16 46 46 H 1.08999 * 111.12627 * 276.21438 * 25 24 21 47 47 H 1.09003 * 111.16341 * 152.06747 * 25 24 21 48 48 H 1.08999 * 110.30890 * 204.63859 * 26 25 24 49 49 H 1.09006 * 110.30869 * 82.47228 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 16 2.6589 -6.3658 -0.0037 13 8 3.4346 -6.3593 1.1869 14 8 3.2741 -6.4955 -1.2782 15 7 1.7129 -7.7183 0.1326 16 6 0.7907 -8.0790 -0.9470 17 1 0.8476 -7.3316 -1.7384 18 6 -0.6372 -8.1355 -0.4004 19 6 -1.7353 -7.4562 -1.2212 20 6 -1.2583 -6.8259 0.0896 21 6 1.1757 -9.4484 -1.5104 22 6 0.2875 -9.7842 -2.7100 23 8 0.6536 -11.0638 -3.2304 24 6 2.6584 -9.4399 -1.9401 25 6 3.3591 -10.0963 -0.7195 26 6 2.2786 -11.1125 -0.2714 27 8 1.0241 -10.4504 -0.4980 28 1 -0.4851 0.8401 -0.0004 29 1 0.6246 -2.5563 -0.8920 30 1 0.6239 -2.5575 0.8880 31 1 2.8719 -3.6051 0.8874 32 1 2.8719 -3.6036 -0.8926 33 1 0.8532 -5.0443 -0.8931 34 1 0.8537 -5.0454 0.8868 35 1 1.7696 -8.2716 0.9273 36 1 -0.9002 -9.0482 0.1341 37 1 -1.4405 -6.9694 -2.1509 38 1 -2.7207 -7.9219 -1.2264 39 1 -1.9303 -6.8772 0.9463 40 1 -0.6496 -5.9242 0.0230 41 1 -0.7559 -9.8047 -2.3953 42 1 0.4191 -9.0270 -3.4829 43 1 0.1307 -11.3418 -3.9949 44 1 2.8051 -10.0380 -2.8396 45 1 3.0133 -8.4201 -2.0891 46 1 3.5562 -9.3624 0.0619 47 1 4.2761 -10.6042 -1.0183 48 1 2.3963 -11.3483 0.7862 49 1 2.3410 -12.0204 -0.8715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339139907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:41 Heat of formation + Delta-G solvation = -180.151685 kcal Electronic energy + Delta-G solvation = -30790.183827 eV Core-core repulsion = 26650.843190 eV Total energy + Delta-G solvation = -4139.340638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35959 -38.48987 -38.18611 -37.25339 -37.10160 -36.48920 -35.13978 -34.17553 -32.84648 -31.86137 -29.69812 -26.81522 -26.31848 -25.66882 -23.22003 -23.02776 -22.41030 -21.74385 -21.01588 -20.40614 -18.77439 -18.65118 -18.44836 -17.62018 -17.43115 -17.06287 -16.87367 -16.62418 -16.44492 -15.93672 -15.69066 -15.36359 -15.25153 -14.70012 -14.51219 -14.20548 -14.07476 -13.86390 -13.55006 -13.47102 -13.43792 -13.20906 -13.16680 -13.01095 -12.79344 -12.74213 -12.62466 -12.51289 -12.30438 -12.20011 -12.06513 -11.89132 -11.76905 -11.61987 -11.37574 -11.29603 -11.08722 -11.03474 -10.79804 -10.67693 -10.57631 -10.11454 -8.22561 -6.33129 -0.80537 1.39302 1.40511 1.53228 1.65476 2.39633 2.66552 2.77405 2.94457 3.10986 3.11716 3.28260 3.49612 3.70196 3.78238 3.83419 3.87794 3.94668 4.02403 4.09732 4.12574 4.23180 4.34245 4.34956 4.43680 4.55860 4.59046 4.62799 4.79359 4.84232 4.86639 4.91775 4.93491 4.94847 5.01363 5.06827 5.12700 5.19483 5.28490 5.31499 5.39157 5.46056 5.63492 5.79841 6.03821 6.12980 6.20047 6.82525 6.95211 7.36194 8.88873 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.002900 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.908131 B = 9652.231741 C =10394.251871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.104 4.104 11 C -0.614 4.614 12 S 2.620 3.380 13 O -0.990 6.990 14 O -0.975 6.975 15 N -1.094 6.094 16 C 0.181 3.819 17 H 0.103 0.897 18 C -0.155 4.155 19 C -0.167 4.167 20 C -0.200 4.200 21 C 0.110 3.890 22 C 0.074 3.926 23 O -0.582 6.582 24 C -0.160 4.160 25 C -0.157 4.157 26 C 0.056 3.944 27 O -0.369 6.369 28 H 0.265 0.735 29 H 0.005 0.995 30 H 0.003 0.997 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.426 0.574 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -24.337 -4.647 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.589 4.589 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.143 4.143 11 C -0.745 4.745 12 S 2.715 3.285 13 O -0.980 6.980 14 O -0.965 6.965 15 N -0.853 5.853 16 C 0.073 3.927 17 H 0.121 0.879 18 C -0.175 4.175 19 C -0.205 4.205 20 C -0.237 4.237 21 C 0.069 3.931 22 C -0.005 4.005 23 O -0.390 6.390 24 C -0.198 4.198 25 C -0.195 4.195 26 C -0.020 4.020 27 O -0.289 6.289 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.021 0.979 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.262 0.738 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.246 0.754 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.248 -24.153 -4.270 24.559 hybrid contribution -0.591 1.139 -0.021 1.284 sum -1.839 -23.013 -4.291 23.482 Atomic orbital electron populations 1.70069 1.07533 1.27779 1.51401 1.25895 0.95796 1.03091 0.94634 0.85467 0.79110 0.79035 0.77889 1.18841 1.20197 1.20329 1.21763 0.93698 0.92549 1.50936 0.92281 1.18942 0.93923 0.91624 0.96015 1.21303 0.98646 0.92338 1.02034 1.30709 1.16741 1.14022 1.12991 1.04518 0.75293 0.75275 0.73369 1.93544 1.68381 1.86666 1.49397 1.93519 1.74097 1.85268 1.43598 1.55322 1.58201 1.42348 1.29450 1.20666 0.87683 0.95988 0.88373 0.87922 1.22467 0.91978 0.97812 1.05221 1.23165 0.98889 1.02970 0.95446 1.23274 1.04483 0.96641 0.99309 1.22341 0.95429 0.87757 0.87602 1.22424 0.98169 0.85773 0.94148 1.86419 1.64436 1.35823 1.52279 1.23324 0.93624 1.03640 0.99180 1.23285 0.99640 0.98734 0.97849 1.23389 0.82192 0.94997 1.01458 1.88354 1.32104 1.51007 1.57399 0.92657 0.97638 0.97867 0.91729 0.91470 0.83610 0.83458 0.73758 0.86369 0.87910 0.87138 0.88052 0.88874 0.91324 0.91453 0.75418 0.89754 0.89006 0.91580 0.89226 0.88826 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.67 4.97 29.85 0.15 1.82 16 10 C -0.10 -4.12 5.16 30.60 0.16 -3.96 16 11 C -0.61 -17.87 4.71 71.98 0.34 -17.53 16 12 S 2.62 72.67 5.32 -56.49 -0.30 72.37 16 13 O -0.99 -33.86 18.08 -127.65 -2.31 -36.16 16 14 O -0.98 -30.62 15.16 -127.65 -1.94 -32.56 16 15 N -1.09 -22.62 3.43 -169.40 -0.58 -23.20 16 16 C 0.18 3.34 1.58 44.99 0.07 3.41 16 17 H 0.10 1.79 7.49 -2.39 -0.02 1.77 16 18 C -0.15 -2.52 4.22 -10.79 -0.05 -2.56 16 19 C -0.17 -2.43 9.89 30.62 0.30 -2.13 16 20 C -0.20 -3.60 10.22 30.62 0.31 -3.29 16 21 C 0.11 2.07 0.54 -10.33 -0.01 2.07 16 22 C 0.07 1.12 6.00 71.98 0.43 1.55 16 23 O -0.58 -9.03 12.67 -139.80 -1.77 -10.80 16 24 C -0.16 -3.40 5.64 31.85 0.18 -3.22 16 25 C -0.16 -3.08 6.76 32.05 0.22 -2.86 16 26 C 0.06 1.00 7.78 72.65 0.56 1.57 16 27 O -0.37 -7.44 9.62 -139.80 -1.35 -8.78 16 28 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 33 H 0.15 3.65 7.37 -2.39 -0.02 3.63 16 34 H 0.15 3.85 7.28 -2.39 -0.02 3.83 16 35 H 0.43 7.90 8.65 -96.74 -0.84 7.06 16 36 H 0.12 1.99 7.51 -2.39 -0.02 1.97 16 37 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.09 1.89 4.59 -2.39 -0.01 1.88 16 41 H 0.07 0.91 7.13 -2.39 -0.02 0.90 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.40 2.54 9.12 -74.05 -0.68 1.87 16 44 H 0.08 1.76 7.22 -2.38 -0.02 1.74 16 45 H 0.09 2.27 5.11 -2.39 -0.01 2.26 16 46 H 0.07 1.38 7.04 -2.39 -0.02 1.37 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -73.98 394.53 -3.10 -77.08 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.54 Total: 25.99 kcal Atomic # 6 Polarization: -58.55 SS G_CDS: 3.37 Total: -55.18 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -0.30 Total: -77.79 kcal Atomic # 8 Polarization: -80.94 SS G_CDS: -7.36 Total: -88.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 72.67 SS G_CDS: -0.30 Total: 72.37 kcal Total: -73.98 -3.10 -77.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339139907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.069 kcal (2) G-P(sol) polarization free energy of solvation -73.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds