Wall clock time and date at job start Wed Apr 1 2020 04:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47240 * 240.00271 * 3 2 1 5 5 H 1.48501 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47261 * 119.99987 * 3 2 1 7 7 C 1.37878 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47295 * 180.02562 * 9 7 2 11 11 O 1.42896 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.35987 * 116.99857 * 180.02562 * 11 10 9 13 13 C 1.38784 * 120.49861 * 0.02562 * 12 11 10 14 14 C 1.38787 * 118.44545 * 179.97438 * 13 12 11 15 15 C 1.38059 * 119.36002 * 0.02562 * 14 13 12 16 16 N 1.31975 * 120.95300 * 359.73764 * 15 14 13 17 17 C 1.32262 * 121.68770 * 0.53060 * 16 15 14 18 18 N 1.39581 * 119.73024 * 179.74750 * 17 16 15 19 19 C 1.34787 * 119.99794 * 359.72829 * 18 17 16 20 20 O 1.21586 * 119.99377 * 359.97438 * 19 18 17 21 21 N 1.34769 * 119.99973 * 179.97438 * 19 18 17 22 22 C 1.46498 * 119.99830 * 179.97438 * 21 19 18 23 23 H 1.09000 * 110.34429 * 324.16787 * 22 21 19 24 24 C 1.51095 * 110.38888 * 86.45838 * 22 21 19 25 25 C 1.30527 * 111.11016 * 135.24354 * 24 22 21 26 26 C 1.51101 * 111.09928 * 0.02562 * 25 24 22 27 27 H 1.08999 * 110.38213 * 224.63460 * 26 25 24 28 28 C 1.52999 * 110.38707 * 102.37051 * 26 25 24 29 29 O 1.42903 * 109.47256 * 66.45527 * 28 26 25 30 30 C 1.54633 * 104.72665 * 343.56116 * 26 25 24 31 31 H 0.97003 * 119.99697 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46928 * 60.00495 * 9 7 2 33 33 H 1.09003 * 109.47088 * 300.00271 * 9 7 2 34 34 H 1.09003 * 109.46761 * 60.00353 * 10 9 7 35 35 H 1.09001 * 109.46925 * 300.00568 * 10 9 7 36 36 H 1.07994 * 120.77197 * 359.97438 * 13 12 11 37 37 H 1.08004 * 120.31744 * 179.97438 * 14 13 12 38 38 H 1.08010 * 119.52581 * 180.02562 * 15 14 13 39 39 H 0.96998 * 120.00514 * 179.72318 * 18 17 16 40 40 H 0.96998 * 119.99986 * 0.02562 * 21 19 18 41 41 H 1.08007 * 124.44880 * 315.22638 * 24 22 21 42 42 H 1.07994 * 124.45194 * 179.97438 * 25 24 22 43 43 H 1.08997 * 109.47286 * 306.45087 * 28 26 25 44 44 H 1.09008 * 109.47201 * 186.44868 * 28 26 25 45 45 H 0.96700 * 114.00311 * 180.02562 * 29 28 26 46 46 H 1.08995 * 111.03811 * 142.67012 * 30 26 25 47 47 H 1.09006 * 111.03292 * 266.59956 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5307 -4.8996 0.0001 12 6 2.2714 -6.0401 0.0007 13 6 3.6579 -5.9795 0.0013 14 6 4.3716 -7.1698 0.0024 15 6 3.6877 -8.3691 0.0024 16 7 2.3683 -8.3982 0.0066 17 6 1.6489 -7.2883 0.0004 18 7 0.2553 -7.3667 -0.0003 19 6 -0.3519 -8.5700 -0.0001 20 8 0.3143 -9.5871 0.0001 21 7 -1.6975 -8.6457 -0.0002 22 6 -2.3575 -9.9536 -0.0007 23 1 -1.7885 -10.6650 -0.5992 24 6 -2.5166 -10.4634 1.4127 25 6 -3.7119 -10.9516 1.6046 26 6 -4.5490 -10.8493 0.3508 27 1 -5.5486 -10.4868 0.5903 28 6 -4.6290 -12.2076 -0.3488 29 8 -5.3578 -13.1236 0.4710 30 6 -3.8018 -9.8286 -0.5385 31 1 -0.4850 0.8401 -0.0004 32 1 0.6241 -2.5567 -0.8904 33 1 0.6247 -2.5571 0.8897 34 1 2.8718 -3.6044 0.8895 35 1 2.8720 -3.6043 -0.8905 36 1 4.1694 -5.0284 0.0008 37 1 5.4516 -7.1579 0.0025 38 1 4.2405 -9.2971 0.0038 39 1 -0.2761 -6.5552 -0.0007 40 1 -2.2289 -7.8343 -0.0008 41 1 -1.7429 -10.4287 2.1655 42 1 -4.0569 -11.3740 2.5367 43 1 -3.6222 -12.5906 -0.5151 44 1 -5.1372 -12.0937 -1.3064 45 1 -5.4478 -14.0074 0.0892 46 1 -3.8543 -10.1130 -1.5894 47 1 -4.1893 -8.8209 -0.3878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341951006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:38 Heat of formation + Delta-G solvation = -74.739597 kcal Electronic energy + Delta-G solvation = -29271.462564 eV Core-core repulsion = 25033.541738 eV Total energy + Delta-G solvation = -4237.920827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.10250 -41.06921 -39.87284 -39.05662 -37.27369 -35.91012 -35.43110 -34.82315 -32.85933 -32.20375 -30.77395 -30.42273 -28.67965 -27.15400 -25.49615 -24.80246 -23.95778 -22.85220 -21.89330 -21.47742 -20.02376 -19.62893 -19.30890 -18.81998 -18.27384 -18.02150 -17.35096 -17.22671 -17.16845 -16.62569 -16.47140 -16.18279 -15.82597 -15.49785 -15.31187 -15.14060 -14.86431 -14.66872 -14.34085 -14.13645 -13.66722 -13.50086 -13.28095 -12.99170 -12.94873 -12.80407 -12.72029 -12.68333 -12.44397 -12.28437 -12.03403 -11.86028 -11.69648 -11.65180 -11.56226 -11.41273 -10.84930 -10.59457 -10.42201 -10.26450 -10.12515 -10.01205 -8.81293 -8.25007 -6.37459 0.16127 0.31633 1.09815 1.42940 1.45544 1.53304 1.56557 2.09258 2.12841 2.45108 2.92526 2.96425 3.10118 3.26390 3.46100 3.59858 3.82059 3.87919 3.98538 4.05862 4.14829 4.19568 4.30793 4.34669 4.35309 4.46134 4.49295 4.54337 4.72228 4.75885 4.77560 4.86866 4.97610 5.05428 5.15253 5.16370 5.28900 5.32354 5.46418 5.51253 5.51390 5.53155 5.71794 5.79978 5.84823 6.08910 6.36006 6.72304 6.77181 6.91752 7.17140 7.32408 7.53521 8.87292 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002073 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.601945 B =13505.261207 C =15657.119220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.329 6.329 12 C 0.039 3.961 13 C -0.147 4.147 14 C -0.148 4.148 15 C 0.074 3.926 16 N -0.473 5.473 17 C 0.329 3.671 18 N -0.661 5.661 19 C 0.694 3.306 20 O -0.573 6.573 21 N -0.723 5.723 22 C 0.185 3.815 23 H 0.083 0.917 24 C -0.190 4.190 25 C -0.133 4.133 26 C -0.068 4.068 27 H 0.095 0.905 28 C 0.086 3.914 29 O -0.592 6.592 30 C -0.112 4.112 31 H 0.266 0.734 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.185 0.815 39 H 0.425 0.575 40 H 0.410 0.590 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.397 0.603 46 H 0.102 0.898 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -22.342 -1.783 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.242 6.242 12 C -0.012 4.012 13 C -0.173 4.173 14 C -0.168 4.168 15 C -0.083 4.083 16 N -0.188 5.188 17 C 0.096 3.904 18 N -0.311 5.311 19 C 0.393 3.607 20 O -0.448 6.448 21 N -0.380 5.380 22 C 0.080 3.920 23 H 0.101 0.899 24 C -0.210 4.210 25 C -0.152 4.152 26 C -0.087 4.087 27 H 0.113 0.887 28 C 0.009 3.991 29 O -0.401 6.401 30 C -0.150 4.150 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.202 0.798 39 H 0.263 0.737 40 H 0.247 0.753 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.247 0.753 46 H 0.121 0.879 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.663 -23.437 -1.415 23.938 hybrid contribution 0.397 2.077 -0.073 2.116 sum -4.266 -21.360 -1.488 21.832 Atomic orbital electron populations 1.70095 1.07866 1.28159 1.50643 1.25964 0.95786 1.03436 0.94341 0.85415 0.78173 0.77628 0.79339 1.18948 1.21050 1.18997 1.21378 0.93883 0.91071 1.51990 0.91092 1.18941 0.94525 0.90984 0.96266 1.22947 0.95615 0.79647 1.00870 1.86023 1.36589 1.12981 1.88618 1.19687 0.92130 0.86063 1.03302 1.21886 0.91350 1.01826 1.02275 1.22259 1.03041 0.91046 1.00491 1.23048 0.88078 0.99757 0.97395 1.67682 1.09379 1.27147 1.14582 1.17686 0.84598 0.87029 1.01082 1.42531 1.03875 1.09238 1.75468 1.16164 0.83037 0.83232 0.78228 1.90980 1.64183 1.34053 1.55567 1.45180 1.03371 1.10262 1.79150 1.20760 0.93816 0.83249 0.94140 0.89942 1.23548 0.97821 1.01696 0.97898 1.23262 0.94677 0.98388 0.98839 1.20978 1.00087 0.94594 0.93010 0.88723 1.22205 0.95332 0.88558 0.93047 1.86423 1.77484 1.26337 1.49808 1.22770 0.90874 1.00730 1.00627 0.92541 0.97959 0.98059 0.91868 0.91768 0.82511 0.80722 0.79821 0.73729 0.75298 0.87743 0.85408 0.93737 0.91182 0.75347 0.87908 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -29.07 9.11 25.60 0.23 -28.84 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.52 5.34 29.85 0.16 1.68 16 10 C 0.08 3.27 4.70 71.98 0.34 3.61 16 11 O -0.33 -12.26 9.39 -93.41 -0.88 -13.14 16 12 C 0.04 1.31 6.72 22.70 0.15 1.46 16 13 C -0.15 -4.03 9.14 22.53 0.21 -3.82 16 14 C -0.15 -3.29 10.10 22.36 0.23 -3.06 16 15 C 0.07 1.91 11.17 84.63 0.95 2.86 16 16 N -0.47 -16.10 7.87 -192.58 -1.52 -17.62 16 17 C 0.33 11.25 7.45 132.99 0.99 12.25 16 18 N -0.66 -20.44 5.40 -321.75 -1.74 -22.18 16 19 C 0.69 21.32 8.52 179.05 1.53 22.85 16 20 O -0.57 -21.74 14.30 -3.99 -0.06 -21.80 16 21 N -0.72 -15.91 5.15 -458.15 -2.36 -18.27 16 22 C 0.18 3.64 3.19 44.92 0.14 3.78 16 23 H 0.08 1.92 7.65 -2.39 -0.02 1.90 16 24 C -0.19 -4.05 10.39 26.26 0.27 -3.78 16 25 C -0.13 -2.36 9.92 26.26 0.26 -2.10 16 26 C -0.07 -0.92 3.19 -10.86 -0.03 -0.95 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 C 0.09 1.01 6.36 71.98 0.46 1.47 16 29 O -0.59 -7.88 13.48 -148.98 -2.01 -9.89 16 30 C -0.11 -1.37 6.40 31.70 0.20 -1.17 16 31 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 34 H 0.06 2.31 7.70 -2.39 -0.02 2.30 16 35 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 36 H 0.16 3.85 6.44 -2.91 -0.02 3.83 16 37 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.42 11.73 8.06 -92.71 -0.75 10.98 16 40 H 0.41 6.87 8.40 -92.71 -0.78 6.09 16 41 H 0.10 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.40 1.81 9.12 -74.06 -0.68 1.14 16 46 H 0.10 0.93 7.90 -2.39 -0.02 0.91 16 47 H 0.10 1.00 7.80 -2.38 -0.02 0.99 16 Total: -1.00 -76.18 396.65 -0.88 -77.05 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -1.18 Total: 28.95 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.54 Total: 6.86 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -5.33 Total: -111.96 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -2.94 Total: -44.83 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -76.18 -0.88 -77.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341951006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.313 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds