Wall clock time and date at job start Wed Apr 1 2020 04:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00079 * 2 1 4 4 H 1.48494 * 109.47182 * 240.00221 * 3 2 1 5 5 H 1.48494 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46941 * 120.00366 * 3 2 1 7 7 C 1.37876 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99820 * 173.00140 * 7 2 1 9 9 C 1.50706 * 120.00357 * 353.00316 * 7 2 1 10 10 C 1.53000 * 115.54833 * 84.79523 * 9 7 2 11 11 S 1.81405 * 109.47202 * 39.92037 * 10 9 7 12 12 O 1.42103 * 110.53885 * 62.23905 * 11 10 9 13 13 O 1.42099 * 110.54376 * 285.48709 * 11 10 9 14 14 N 1.65603 * 104.44987 * 173.86252 * 11 10 9 15 15 C 1.46502 * 120.00103 * 64.99896 * 14 11 10 16 16 C 1.52993 * 109.47057 * 164.99824 * 15 14 11 17 17 C 1.52999 * 109.47264 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47355 * 180.02562 * 17 16 15 19 19 C 1.42903 * 114.00021 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47340 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.27100 * 304.36757 * 20 19 18 22 22 C 1.55491 * 110.28395 * 182.20602 * 20 19 18 23 23 C 1.55315 * 100.69376 * 204.65462 * 22 20 19 24 24 C 1.54377 * 102.43392 * 34.13180 * 23 22 20 25 25 O 1.43242 * 107.59019 * 338.53691 * 24 23 22 26 26 C 1.52989 * 117.51842 * 230.49578 * 9 7 2 27 27 C 1.52998 * 60.00213 * 107.48085 * 26 9 7 28 28 H 0.96994 * 119.99886 * 5.02363 * 1 2 3 29 29 H 1.09003 * 109.47026 * 279.92349 * 10 9 7 30 30 H 1.08999 * 109.47258 * 159.92304 * 10 9 7 31 31 H 0.97004 * 119.99705 * 245.00417 * 14 11 10 32 32 H 1.08997 * 109.46609 * 44.99958 * 15 14 11 33 33 H 1.08997 * 109.47126 * 285.00444 * 15 14 11 34 34 H 1.09007 * 109.47325 * 60.00480 * 16 15 14 35 35 H 1.08997 * 109.47658 * 300.00293 * 16 15 14 36 36 H 1.08997 * 109.47092 * 60.00219 * 17 16 15 37 37 H 1.09008 * 109.47359 * 300.00478 * 17 16 15 38 38 H 1.09001 * 109.47114 * 59.99856 * 19 18 17 39 39 H 1.08994 * 109.46982 * 300.00191 * 19 18 17 40 40 H 1.08994 * 111.33605 * 86.78546 * 22 20 19 41 41 H 1.08999 * 111.14980 * 322.44682 * 22 20 19 42 42 H 1.08999 * 110.84436 * 275.83440 * 23 22 20 43 43 H 1.09004 * 110.84592 * 152.41922 * 23 22 20 44 44 H 1.08997 * 109.83854 * 98.05956 * 24 23 22 45 45 H 1.09006 * 109.83082 * 219.02981 * 24 23 22 46 46 H 1.09004 * 117.49873 * 214.97042 * 26 9 7 47 47 H 1.08996 * 117.50464 * 359.97438 * 26 9 7 48 48 H 1.09002 * 117.50078 * 252.51523 * 27 26 9 49 49 H 1.08996 * 117.49878 * 107.48407 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1975 -0.1145 9 6 1.2595 -2.4944 0.1579 10 6 0.6802 -3.0841 -1.1296 11 16 1.8651 -2.8588 -2.4846 12 8 3.0729 -3.5561 -2.2117 13 8 1.8820 -1.5038 -2.9122 14 7 1.1978 -3.6806 -3.7581 15 6 -0.0682 -3.2277 -4.3395 16 6 -0.2746 -3.8995 -5.6985 17 6 -1.5965 -3.4260 -6.3061 18 8 -1.7895 -4.0540 -7.5751 19 6 -3.0018 -3.6776 -8.2315 20 6 -3.1027 -4.4059 -9.5732 21 1 -2.2191 -4.2052 -10.1792 22 6 -4.3888 -3.9675 -10.3292 23 6 -4.6255 -5.2052 -11.2371 24 6 -4.1370 -6.3684 -10.3473 25 8 -3.2528 -5.8190 -9.3634 26 6 1.7651 -3.4742 1.2185 27 6 0.4653 -2.7008 1.4492 28 1 -0.4850 0.8368 -0.0736 29 1 -0.2526 -2.5759 -1.3745 30 1 0.4881 -4.1476 -0.9880 31 1 1.6453 -4.4620 -4.1189 32 1 -0.0418 -2.1458 -4.4694 33 1 -0.8895 -3.4938 -3.6741 34 1 -0.3010 -4.9815 -5.5686 35 1 0.5467 -3.6334 -6.3639 36 1 -1.5697 -2.3442 -6.4360 37 1 -2.4181 -3.6918 -5.6408 38 1 -3.0036 -2.6010 -8.4018 39 1 -3.8526 -3.9479 -7.6061 40 1 -4.2129 -3.0716 -10.9245 41 1 -5.2200 -3.8217 -9.6393 42 1 -4.0309 -5.1374 -12.1481 43 1 -5.6838 -5.3159 -11.4738 44 1 -4.9878 -6.8415 -9.8569 45 1 -3.6050 -7.1005 -10.9549 46 1 1.6851 -4.5389 0.9991 47 1 2.6372 -3.1787 1.8018 48 1 0.4821 -1.8962 2.1844 49 1 -0.4698 -3.2567 1.3815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346441270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:37 Heat of formation + Delta-G solvation = -152.035637 kcal Electronic energy + Delta-G solvation = -28443.100435 eV Core-core repulsion = 24304.979001 eV Total energy + Delta-G solvation = -4138.121434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.87777 -38.04560 -36.70195 -36.13723 -35.65986 -34.82718 -32.62236 -32.03573 -31.79733 -30.28107 -28.14653 -25.99720 -25.43706 -24.51834 -22.10600 -21.96529 -21.36453 -21.18039 -19.61710 -18.51629 -17.51829 -16.88188 -16.80224 -16.39225 -16.27739 -16.14480 -15.59520 -15.21021 -14.97518 -14.67763 -14.56240 -14.21931 -14.00912 -13.71713 -13.59931 -13.05357 -12.90180 -12.70901 -12.21643 -12.17472 -12.11470 -11.79796 -11.74290 -11.63044 -11.36922 -11.23389 -11.16380 -11.06928 -10.99040 -10.95765 -10.88497 -10.75883 -10.51765 -10.31943 -10.07936 -9.84541 -9.78171 -9.69189 -9.15607 -8.88099 -8.51382 -8.08514 -6.13999 -4.28212 1.24091 3.22493 3.36463 3.37958 3.43240 3.46268 3.71723 3.99838 4.37057 4.41904 4.44777 4.70378 4.71839 4.77340 4.84968 4.89495 4.99541 5.07574 5.08987 5.11560 5.16412 5.17739 5.22199 5.30394 5.32133 5.39157 5.43368 5.46897 5.51477 5.64149 5.67579 5.70264 5.96835 6.03148 6.08489 6.29390 6.36535 6.38721 6.64196 6.66250 6.72327 6.97526 7.01373 7.19978 7.37885 7.41244 7.80732 8.21037 8.80152 9.48557 10.93613 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.001971 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.635956 B =14205.377790 C =14723.334271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.097 3.903 3 Si 0.891 3.109 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.050 3.950 10 C -0.560 4.560 11 S 2.625 3.375 12 O -0.976 6.976 13 O -0.942 6.942 14 N -1.137 6.137 15 C 0.120 3.880 16 C -0.123 4.123 17 C 0.062 3.938 18 O -0.380 6.380 19 C 0.064 3.936 20 C 0.083 3.917 21 H 0.079 0.921 22 C -0.150 4.150 23 C -0.156 4.156 24 C 0.047 3.953 25 O -0.370 6.370 26 C -0.204 4.204 27 C -0.145 4.145 28 H 0.265 0.735 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.409 0.591 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 -9.282 -19.229 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.110 4.110 3 Si 0.718 3.282 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.048 3.952 10 C -0.693 4.693 11 S 2.722 3.278 12 O -0.967 6.967 13 O -0.931 6.931 14 N -0.894 5.894 15 C -0.007 4.007 16 C -0.162 4.162 17 C -0.015 4.015 18 O -0.300 6.300 19 C -0.013 4.013 20 C 0.025 3.975 21 H 0.097 0.903 22 C -0.188 4.188 23 C -0.194 4.194 24 C -0.029 4.029 25 O -0.289 6.289 26 C -0.242 4.242 27 C -0.183 4.183 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.115 0.885 31 H 0.241 0.759 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.070 -8.764 -19.072 23.730 hybrid contribution -0.569 0.512 -0.002 0.766 sum -11.639 -8.251 -19.074 23.819 Atomic orbital electron populations 1.69944 1.06172 1.27511 1.46562 1.24895 0.94736 0.99269 0.92103 0.86643 0.80072 0.82316 0.79208 1.19153 1.21051 1.19977 1.20553 0.93642 0.88755 1.54950 0.91320 1.18179 0.98739 0.94005 0.84307 1.29975 1.16550 1.06317 1.16425 1.04589 0.75240 0.73745 0.74260 1.93485 1.42849 1.75082 1.85249 1.93525 1.86090 1.34010 1.79517 1.56106 1.35020 1.46112 1.52136 1.21063 0.85717 0.99993 0.93929 1.21655 0.97024 1.01676 0.95859 1.22456 0.97674 0.96761 0.84641 1.87914 1.39977 1.68961 1.33111 1.22633 0.88011 0.97719 0.92970 1.23109 0.97767 0.81584 0.95013 0.90269 1.23346 0.97746 0.98897 0.98784 1.23117 1.02714 0.94477 0.99048 1.23145 0.93574 0.95986 0.90223 1.88541 1.66618 1.20859 1.52898 1.23122 0.98673 0.95607 1.06759 1.22526 0.92401 1.01103 1.02311 0.92553 0.85555 0.88507 0.75919 0.89944 0.91896 0.90443 0.90287 0.92729 0.92838 0.91892 0.92557 0.89416 0.89968 0.90373 0.89857 0.91312 0.91381 0.91248 0.89705 0.89664 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.91 12.96 55.43 0.72 -23.19 16 2 C 0.10 2.68 5.39 -17.82 -0.10 2.58 16 3 Si 0.89 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -14.90 6.89 -34.44 -0.24 -15.14 16 8 H 0.07 1.94 7.82 -52.48 -0.41 1.53 16 9 C 0.05 1.22 1.64 -155.66 -0.26 0.96 16 10 C -0.56 -11.73 6.18 37.16 0.23 -11.50 16 11 S 2.63 55.30 4.63 -107.50 -0.50 54.80 16 12 O -0.98 -22.77 18.08 -57.54 -1.04 -23.81 16 13 O -0.94 -23.32 16.63 -57.54 -0.96 -24.28 16 14 N -1.14 -17.56 5.89 -10.62 -0.06 -17.62 16 15 C 0.12 1.61 6.13 -4.04 -0.02 1.58 16 16 C -0.12 -1.40 5.73 -26.74 -0.15 -1.56 16 17 C 0.06 0.66 5.94 37.16 0.22 0.88 16 18 O -0.38 -4.51 10.33 -36.86 -0.38 -4.89 16 19 C 0.06 0.57 5.65 37.16 0.21 0.78 16 20 C 0.08 0.70 3.74 -25.41 -0.09 0.61 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.15 -0.82 6.61 -24.18 -0.16 -0.98 16 23 C -0.16 -0.77 7.00 -24.78 -0.17 -0.94 16 24 C 0.05 0.33 7.80 37.88 0.30 0.63 16 25 O -0.37 -3.95 11.03 -36.86 -0.41 -4.36 16 26 C -0.20 -4.48 9.88 -26.74 -0.26 -4.74 16 27 C -0.14 -3.30 9.50 -26.73 -0.25 -3.56 16 28 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 29 H 0.13 2.64 8.14 -51.92 -0.42 2.21 16 30 H 0.10 1.70 7.95 -51.92 -0.41 1.28 16 31 H 0.41 5.38 8.62 -34.47 -0.30 5.08 16 32 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 47 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 48 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 49 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 413.45 15.07 6.23 6.23 Total: -1.00 -34.68 413.45 -10.86 -45.53 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.68 Total: 5.15 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: -0.76 Total: -30.39 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.66 Total: -40.82 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -2.78 Total: -57.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.50 Total: 54.80 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.68 -10.86 -45.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.502 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds