Wall clock time and date at job start Wed Apr 1 2020 04:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00079 * 2 1 4 4 H 1.48494 * 109.47182 * 240.00221 * 3 2 1 5 5 H 1.48494 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46941 * 120.00366 * 3 2 1 7 7 C 1.37876 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99820 * 173.00140 * 7 2 1 9 9 C 1.50706 * 120.00357 * 353.00316 * 7 2 1 10 10 C 1.53000 * 115.54833 * 84.79523 * 9 7 2 11 11 S 1.81405 * 109.47202 * 39.92037 * 10 9 7 12 12 O 1.42103 * 110.53885 * 62.23905 * 11 10 9 13 13 O 1.42099 * 110.54376 * 285.48709 * 11 10 9 14 14 N 1.65603 * 104.44987 * 173.86252 * 11 10 9 15 15 C 1.46502 * 120.00103 * 64.99896 * 14 11 10 16 16 C 1.52993 * 109.47057 * 164.99824 * 15 14 11 17 17 C 1.52999 * 109.47264 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47355 * 180.02562 * 17 16 15 19 19 C 1.42903 * 114.00021 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47340 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.27100 * 304.36757 * 20 19 18 22 22 C 1.55491 * 110.28395 * 182.20602 * 20 19 18 23 23 C 1.55315 * 100.69376 * 204.65462 * 22 20 19 24 24 C 1.54377 * 102.43392 * 34.13180 * 23 22 20 25 25 O 1.43242 * 107.59019 * 338.53691 * 24 23 22 26 26 C 1.52989 * 117.51842 * 230.49578 * 9 7 2 27 27 C 1.52998 * 60.00213 * 107.48085 * 26 9 7 28 28 H 0.96994 * 119.99886 * 5.02363 * 1 2 3 29 29 H 1.09003 * 109.47026 * 279.92349 * 10 9 7 30 30 H 1.08999 * 109.47258 * 159.92304 * 10 9 7 31 31 H 0.97004 * 119.99705 * 245.00417 * 14 11 10 32 32 H 1.08997 * 109.46609 * 44.99958 * 15 14 11 33 33 H 1.08997 * 109.47126 * 285.00444 * 15 14 11 34 34 H 1.09007 * 109.47325 * 60.00480 * 16 15 14 35 35 H 1.08997 * 109.47658 * 300.00293 * 16 15 14 36 36 H 1.08997 * 109.47092 * 60.00219 * 17 16 15 37 37 H 1.09008 * 109.47359 * 300.00478 * 17 16 15 38 38 H 1.09001 * 109.47114 * 59.99856 * 19 18 17 39 39 H 1.08994 * 109.46982 * 300.00191 * 19 18 17 40 40 H 1.08994 * 111.33605 * 86.78546 * 22 20 19 41 41 H 1.08999 * 111.14980 * 322.44682 * 22 20 19 42 42 H 1.08999 * 110.84436 * 275.83440 * 23 22 20 43 43 H 1.09004 * 110.84592 * 152.41922 * 23 22 20 44 44 H 1.08997 * 109.83854 * 98.05956 * 24 23 22 45 45 H 1.09006 * 109.83082 * 219.02981 * 24 23 22 46 46 H 1.09004 * 117.49873 * 214.97042 * 26 9 7 47 47 H 1.08996 * 117.50464 * 359.97438 * 26 9 7 48 48 H 1.09002 * 117.50078 * 252.51523 * 27 26 9 49 49 H 1.08996 * 117.49878 * 107.48407 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1975 -0.1145 9 6 1.2595 -2.4944 0.1579 10 6 0.6802 -3.0841 -1.1296 11 16 1.8651 -2.8588 -2.4846 12 8 3.0729 -3.5561 -2.2117 13 8 1.8820 -1.5038 -2.9122 14 7 1.1978 -3.6806 -3.7581 15 6 -0.0682 -3.2277 -4.3395 16 6 -0.2746 -3.8995 -5.6985 17 6 -1.5965 -3.4260 -6.3061 18 8 -1.7895 -4.0540 -7.5751 19 6 -3.0018 -3.6776 -8.2315 20 6 -3.1027 -4.4059 -9.5732 21 1 -2.2191 -4.2052 -10.1792 22 6 -4.3888 -3.9675 -10.3292 23 6 -4.6255 -5.2052 -11.2371 24 6 -4.1370 -6.3684 -10.3473 25 8 -3.2528 -5.8190 -9.3634 26 6 1.7651 -3.4742 1.2185 27 6 0.4653 -2.7008 1.4492 28 1 -0.4850 0.8368 -0.0736 29 1 -0.2526 -2.5759 -1.3745 30 1 0.4881 -4.1476 -0.9880 31 1 1.6453 -4.4620 -4.1189 32 1 -0.0418 -2.1458 -4.4694 33 1 -0.8895 -3.4938 -3.6741 34 1 -0.3010 -4.9815 -5.5686 35 1 0.5467 -3.6334 -6.3639 36 1 -1.5697 -2.3442 -6.4360 37 1 -2.4181 -3.6918 -5.6408 38 1 -3.0036 -2.6010 -8.4018 39 1 -3.8526 -3.9479 -7.6061 40 1 -4.2129 -3.0716 -10.9245 41 1 -5.2200 -3.8217 -9.6393 42 1 -4.0309 -5.1374 -12.1481 43 1 -5.6838 -5.3159 -11.4738 44 1 -4.9878 -6.8415 -9.8569 45 1 -3.6050 -7.1005 -10.9549 46 1 1.6851 -4.5389 0.9991 47 1 2.6372 -3.1787 1.8018 48 1 0.4821 -1.8962 2.1844 49 1 -0.4698 -3.2567 1.3815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346441270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:36 Heat of formation + Delta-G solvation = -177.172182 kcal Electronic energy + Delta-G solvation = -28444.190437 eV Core-core repulsion = 24304.979001 eV Total energy + Delta-G solvation = -4139.211437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.47227 -38.85540 -38.51375 -37.84558 -36.88602 -36.56598 -34.07840 -33.19119 -32.64014 -31.05243 -29.84421 -27.48271 -26.69223 -25.41388 -22.94784 -22.85197 -22.52804 -22.07217 -21.43390 -20.14128 -18.47432 -18.21842 -18.09523 -17.68599 -17.04241 -16.93214 -16.86716 -16.70979 -16.54247 -15.97168 -15.71929 -15.47880 -15.25766 -14.85749 -14.82061 -14.24998 -13.90902 -13.75229 -13.70856 -13.47139 -13.16908 -13.02280 -12.89377 -12.80004 -12.73860 -12.67735 -12.52074 -12.41624 -12.31356 -12.08511 -12.06334 -12.01095 -11.95140 -11.83849 -11.68466 -11.53549 -10.85799 -10.56171 -10.52120 -10.47197 -10.38430 -9.87125 -8.21076 -6.37883 -0.39948 1.37541 1.41395 1.47468 2.13979 2.41153 2.61492 2.88256 3.07596 3.10734 3.37159 3.55692 3.61718 3.84879 3.91843 3.97674 4.00858 4.11844 4.14962 4.16941 4.33627 4.36835 4.39540 4.51223 4.52243 4.57022 4.61309 4.61985 4.62767 4.66190 4.81076 4.83374 4.88368 4.90003 4.98327 5.00499 5.01715 5.14479 5.21344 5.23769 5.27368 5.42483 5.62841 5.70773 6.07548 6.20078 6.23150 6.28623 6.70633 7.39226 8.85752 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.001971 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.635956 B =14205.377790 C =14723.334271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.059 3.941 3 Si 0.926 3.074 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.047 0.953 9 C 0.012 3.988 10 C -0.553 4.553 11 S 2.635 3.365 12 O -1.005 7.005 13 O -0.987 6.987 14 N -1.121 6.121 15 C 0.113 3.887 16 C -0.115 4.115 17 C 0.061 3.939 18 O -0.404 6.404 19 C 0.058 3.942 20 C 0.075 3.925 21 H 0.072 0.928 22 C -0.143 4.143 23 C -0.150 4.150 24 C 0.037 3.963 25 O -0.404 6.404 26 C -0.191 4.191 27 C -0.141 4.141 28 H 0.267 0.733 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.421 0.579 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 -10.193 -20.038 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.146 4.146 3 Si 0.751 3.249 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.594 4.594 8 H 0.065 0.935 9 C 0.010 3.990 10 C -0.686 4.686 11 S 2.732 3.268 12 O -0.995 6.995 13 O -0.977 6.977 14 N -0.881 5.881 15 C -0.014 4.014 16 C -0.155 4.155 17 C -0.016 4.016 18 O -0.324 6.324 19 C -0.019 4.019 20 C 0.018 3.982 21 H 0.090 0.910 22 C -0.181 4.181 23 C -0.188 4.188 24 C -0.039 4.039 25 O -0.325 6.325 26 C -0.228 4.228 27 C -0.179 4.179 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.257 0.743 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.730 -9.675 -19.881 25.513 hybrid contribution -0.053 0.723 0.216 0.756 sum -12.783 -8.952 -19.665 25.105 Atomic orbital electron populations 1.69969 1.06526 1.27979 1.47202 1.25414 0.95541 1.01343 0.92300 0.86101 0.79504 0.80472 0.78789 1.20548 1.19565 1.19082 1.20693 0.92972 0.90779 1.54921 0.93471 1.18356 1.00289 0.94049 0.86330 1.29835 1.15810 1.08569 1.14410 1.03947 0.75033 0.72903 0.74872 1.93436 1.44833 1.75258 1.85998 1.93469 1.86816 1.36946 1.80477 1.55548 1.35816 1.46080 1.50681 1.21283 0.85061 0.99533 0.95474 1.21555 0.97488 1.01904 0.94503 1.22468 0.97435 0.97060 0.84676 1.87876 1.41399 1.69550 1.33569 1.22841 0.87032 0.98895 0.93100 1.23248 0.99068 0.80956 0.94960 0.91033 1.23352 0.96254 0.99698 0.98767 1.23124 1.03851 0.93112 0.98667 1.23337 0.93410 0.96888 0.90241 1.88495 1.67577 1.22139 1.54274 1.23206 0.97927 0.96878 1.04834 1.22470 0.93813 1.00935 1.00725 0.92401 0.85550 0.84606 0.74328 0.91262 0.89763 0.89630 0.90853 0.92135 0.91708 0.90121 0.92309 0.87747 0.89405 0.89720 0.88073 0.90802 0.91161 0.88079 0.90268 0.91780 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.50 12.96 21.45 0.28 -48.22 16 2 C 0.06 3.28 5.39 84.65 0.46 3.73 16 3 Si 0.93 44.91 29.55 68.60 2.03 46.94 16 4 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.56 -30.87 6.89 25.60 0.18 -30.70 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.01 0.56 1.64 -52.93 -0.09 0.48 16 10 C -0.55 -22.17 6.18 71.98 0.45 -21.72 16 11 S 2.64 109.71 4.63 -56.49 -0.26 109.45 16 12 O -1.00 -46.59 18.08 -127.65 -2.31 -48.90 16 13 O -0.99 -49.67 16.63 -127.65 -2.12 -51.79 16 14 N -1.12 -33.04 5.89 -187.50 -1.10 -34.15 16 15 C 0.11 2.85 6.13 86.38 0.53 3.38 16 16 C -0.12 -2.46 5.73 30.59 0.18 -2.28 16 17 C 0.06 1.20 5.94 71.98 0.43 1.63 16 18 O -0.40 -9.22 10.33 -147.42 -1.52 -10.74 16 19 C 0.06 0.98 5.65 71.98 0.41 1.38 16 20 C 0.07 1.21 3.74 31.45 0.12 1.32 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 C -0.14 -1.28 6.61 32.25 0.21 -1.07 16 23 C -0.15 -1.18 7.00 31.86 0.22 -0.96 16 24 C 0.04 0.49 7.80 72.45 0.56 1.06 16 25 O -0.40 -8.50 11.03 -147.42 -1.63 -10.13 16 26 C -0.19 -8.02 9.88 30.59 0.30 -7.71 16 27 C -0.14 -6.21 9.50 30.59 0.29 -5.92 16 28 H 0.27 14.00 8.32 -92.71 -0.77 13.23 16 29 H 0.13 5.06 8.14 -2.39 -0.02 5.04 16 30 H 0.14 4.27 7.95 -2.39 -0.02 4.25 16 31 H 0.42 10.40 8.62 -96.74 -0.83 9.56 16 32 H 0.07 1.96 7.69 -2.39 -0.02 1.94 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.09 0.69 8.06 -2.39 -0.02 0.67 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.10 3.56 8.08 -2.38 -0.02 3.54 16 47 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 48 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -75.04 413.45 -2.31 -77.35 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.09 Total: 27.56 kcal Atomic # 6 Polarization: -61.62 SS G_CDS: 4.24 Total: -57.38 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -0.83 Total: -82.37 kcal Atomic # 8 Polarization: -113.98 SS G_CDS: -7.58 Total: -121.56 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 109.71 SS G_CDS: -0.26 Total: 109.45 kcal Total: -75.04 -2.31 -77.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.818 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds