Wall clock time and date at job start Wed Apr 1 2020 04:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 119.99717 * 2 1 4 4 H 1.48506 * 109.46728 * 269.99534 * 3 2 1 5 5 H 1.48495 * 109.47677 * 29.99528 * 3 2 1 6 6 H 1.48504 * 109.47163 * 149.99912 * 3 2 1 7 7 C 1.38947 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99828 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00309 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00310 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99577 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99878 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.34767 * 120.00481 * 180.02562 * 13 12 10 15 15 O 1.21595 * 119.99684 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00187 * 179.97438 * 14 13 12 17 17 C 1.39939 * 119.99733 * 175.31140 * 16 14 13 18 18 C 1.38930 * 120.04293 * 216.03212 * 17 16 14 19 19 C 1.38115 * 120.04362 * 180.02562 * 18 17 16 20 20 C 1.38217 * 120.12252 * 359.71698 * 19 18 17 21 21 C 1.38759 * 120.08484 * 0.55735 * 20 19 18 22 22 O 1.35895 * 120.02422 * 179.71564 * 21 20 19 23 23 C 1.42898 * 116.99861 * 5.08620 * 22 21 20 24 24 C 1.54892 * 110.48845 * 156.26438 * 23 22 21 25 25 C 1.54889 * 102.74809 * 156.61966 * 24 23 22 26 26 C 1.54263 * 104.19908 * 322.06088 * 25 24 23 27 27 C 1.53874 * 106.59602 * 23.60902 * 26 25 24 28 28 C 1.38626 * 119.95527 * 359.44698 * 21 20 19 29 29 H 0.97001 * 120.00071 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99832 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46997 * 60.00125 * 12 10 9 32 32 H 1.08995 * 109.47258 * 300.00054 * 12 10 9 33 33 H 0.97006 * 119.99673 * 359.97438 * 13 12 10 34 34 H 0.97001 * 119.99818 * 355.31646 * 16 14 13 35 35 H 1.07999 * 119.97455 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.94061 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.95556 * 180.28023 * 20 19 18 38 38 H 1.09002 * 110.53718 * 33.65394 * 23 22 21 39 39 H 1.08997 * 110.76021 * 274.93631 * 24 23 22 40 40 H 1.09001 * 110.75389 * 38.30451 * 24 23 22 41 41 H 1.09000 * 110.48580 * 80.73939 * 25 24 23 42 42 H 1.09002 * 110.48336 * 203.37758 * 25 24 23 43 43 H 1.09002 * 110.02988 * 264.32761 * 26 25 24 44 44 H 1.08999 * 110.07710 * 142.91732 * 26 25 24 45 45 H 1.09004 * 110.03430 * 240.71773 * 27 26 25 46 46 H 1.08997 * 110.07110 * 119.31075 * 27 26 25 47 47 H 1.08004 * 120.06300 * 180.25085 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4209 0.0000 12 6 5.5607 -2.3705 0.0000 13 7 6.0491 -3.7517 -0.0006 14 6 7.3741 -3.9979 -0.0002 15 8 8.1642 -3.0737 0.0012 16 7 7.8234 -5.2686 -0.0002 17 6 9.1955 -5.5256 -0.0989 18 6 9.6470 -6.6282 -0.8135 19 6 11.0011 -6.8821 -0.9104 20 6 11.9105 -6.0374 -0.3021 21 6 11.4651 -4.9379 0.4176 22 8 12.3601 -4.1115 1.0200 23 6 13.7449 -4.3689 0.7792 24 6 14.5813 -3.0839 0.9986 25 6 15.9938 -3.6429 1.3009 26 6 15.7284 -4.9015 2.1525 27 6 14.2985 -5.3631 1.8207 28 6 10.1067 -4.6799 0.5172 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3632 -0.0004 31 1 5.9240 -1.8566 0.8901 32 1 5.9240 -1.8566 -0.8899 33 1 5.4188 -4.4890 -0.0006 34 1 7.1957 -6.0050 0.0680 35 1 8.9386 -7.2875 -1.2928 36 1 11.3504 -7.7394 -1.4667 37 1 12.9690 -6.2360 -0.3835 38 1 13.8926 -4.7525 -0.2304 39 1 14.5930 -2.4718 0.0968 40 1 14.2009 -2.5157 1.8474 41 1 16.5048 -3.9092 0.3756 42 1 16.5787 -2.9167 1.8653 43 1 15.8058 -4.6584 3.2122 44 1 16.4423 -5.6842 1.8961 45 1 13.6819 -5.3440 2.7195 46 1 14.3178 -6.3696 1.4028 47 1 9.7582 -3.8223 1.0736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348511300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:26 Heat of formation + Delta-G solvation = -99.251088 kcal Electronic energy + Delta-G solvation = -28994.542664 eV Core-core repulsion = 24755.558939 eV Total energy + Delta-G solvation = -4238.983725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89879 -41.08266 -40.31037 -39.03889 -37.32060 -36.31766 -35.51890 -35.39251 -33.84040 -31.51323 -30.66318 -29.70294 -29.02299 -28.66184 -26.27685 -24.12254 -23.48010 -22.18421 -21.51130 -21.40402 -21.15244 -20.57728 -19.80534 -19.37360 -17.67307 -17.52953 -17.34258 -16.97050 -16.85875 -16.69507 -16.58089 -16.05276 -15.81616 -15.64396 -15.51555 -15.08118 -14.91635 -14.50867 -14.35171 -14.29935 -14.12018 -14.03203 -13.78133 -13.27560 -13.18285 -12.97158 -12.70582 -12.49020 -12.45238 -12.14515 -12.05976 -12.00997 -11.77079 -11.58834 -11.56929 -11.35796 -11.27664 -11.10639 -10.67325 -10.35913 -10.27173 -9.39785 -9.00246 -8.46193 -6.08191 0.28646 0.49342 1.30654 1.33636 1.37684 1.44245 1.77061 1.94498 2.19812 2.24989 2.75209 2.83477 3.10115 3.17983 3.52881 3.61314 3.88561 3.95425 3.96576 4.09975 4.24208 4.29259 4.36494 4.40378 4.42401 4.46121 4.48869 4.51783 4.62422 4.70934 4.77147 4.88699 5.03214 5.10541 5.16831 5.19560 5.25059 5.28837 5.34186 5.39970 5.42249 5.48053 5.51191 5.85774 5.87964 5.91355 6.47650 6.54541 6.77118 6.84653 7.26638 7.36143 7.76587 8.70078 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.001779 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.134880 B =15734.524511 C =17059.738926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.613 6.613 12 C 0.137 3.863 13 N -0.718 5.718 14 C 0.705 3.295 15 O -0.607 6.607 16 N -0.673 5.673 17 C 0.190 3.810 18 C -0.181 4.181 19 C -0.055 4.055 20 C -0.225 4.225 21 C 0.134 3.866 22 O -0.329 6.329 23 C 0.069 3.931 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.146 4.146 28 C -0.185 4.185 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.413 0.587 34 H 0.425 0.575 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.598 -11.851 0.014 36.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.777 3.223 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.499 6.499 12 C 0.009 3.991 13 N -0.375 5.375 14 C 0.405 3.595 15 O -0.487 6.487 16 N -0.322 5.322 17 C 0.095 3.905 18 C -0.201 4.201 19 C -0.073 4.073 20 C -0.244 4.244 21 C 0.088 3.912 22 O -0.243 6.243 23 C 0.013 3.987 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.184 4.184 28 C -0.206 4.206 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.251 0.749 34 H 0.264 0.736 35 H 0.170 0.830 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 34.560 -11.394 0.146 36.390 hybrid contribution -1.159 0.492 0.178 1.272 sum 33.400 -10.903 0.324 35.136 Atomic orbital electron populations 1.69777 1.07996 1.29452 1.49211 1.26044 0.96413 1.02525 0.95695 0.85464 0.79578 0.77134 0.80082 1.18072 1.19829 1.15668 1.19034 0.80927 0.95308 1.50806 0.91736 1.41911 1.06144 1.07413 1.66222 1.20437 0.89904 0.83909 0.82393 1.90525 1.70730 1.32247 1.56396 1.20741 0.89420 0.83743 1.05208 1.44663 1.05095 1.09244 1.78523 1.15877 0.82303 0.83513 0.77759 1.90929 1.55274 1.44095 1.58391 1.42371 1.06515 1.06867 1.76409 1.17346 0.81589 0.95833 0.95727 1.21122 0.97477 0.99287 1.02262 1.21119 0.91338 0.98590 0.96261 1.21494 1.01828 0.96735 1.04323 1.18889 0.88828 0.90406 0.93042 1.86128 1.17188 1.53242 1.67722 1.23684 0.77253 0.97804 0.99949 1.22615 0.95121 0.95753 1.02628 1.22313 0.94939 0.97289 1.00912 1.22075 0.95130 0.98108 1.00464 1.22680 0.97505 0.99274 0.98943 1.20400 0.90898 1.03342 1.05994 0.90913 0.77225 0.87903 0.87760 0.74867 0.73590 0.82969 0.81769 0.83218 0.89040 0.90436 0.91394 0.89916 0.90043 0.91476 0.89899 0.92157 0.89960 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 13.96 21.66 0.30 -53.92 16 2 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 3 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 7 C -0.33 -18.78 10.16 84.04 0.85 -17.92 16 8 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 9 N -0.58 -26.43 5.09 -306.99 -1.56 -27.99 16 10 C 0.45 19.28 7.85 87.66 0.69 19.96 16 11 O -0.61 -31.13 15.24 -3.06 -0.05 -31.17 16 12 C 0.14 4.50 6.15 85.63 0.53 5.03 16 13 N -0.72 -21.87 5.53 -482.30 -2.67 -24.53 16 14 C 0.71 21.55 8.40 179.06 1.50 23.06 16 15 O -0.61 -22.58 13.83 -4.01 -0.06 -22.64 16 16 N -0.67 -15.83 5.34 -317.22 -1.69 -17.52 16 17 C 0.19 4.61 6.28 38.13 0.24 4.85 16 18 C -0.18 -3.13 9.96 22.41 0.22 -2.91 16 19 C -0.05 -0.79 10.03 22.24 0.22 -0.57 16 20 C -0.22 -3.88 8.87 22.39 0.20 -3.68 16 21 C 0.13 3.28 6.66 22.49 0.15 3.43 16 22 O -0.33 -8.05 9.85 -92.37 -0.91 -8.96 16 23 C 0.07 1.09 2.69 31.67 0.09 1.18 16 24 C -0.12 -1.70 6.62 31.89 0.21 -1.49 16 25 C -0.12 -1.00 6.83 31.67 0.22 -0.78 16 26 C -0.12 -1.06 6.80 31.32 0.21 -0.85 16 27 C -0.15 -1.84 6.28 31.32 0.20 -1.64 16 28 C -0.18 -5.33 8.63 22.48 0.19 -5.13 16 29 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.39 15.13 5.76 -92.70 -0.53 14.59 16 31 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 32 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.41 12.21 7.46 -92.70 -0.69 11.52 16 34 H 0.43 7.14 8.84 -92.71 -0.82 6.32 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.15 1.79 5.51 -2.91 -0.02 1.77 16 38 H 0.09 1.20 6.27 -2.39 -0.01 1.18 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.97 8.07 -2.39 -0.02 0.96 16 46 H 0.08 0.80 7.70 -2.39 -0.02 0.78 16 47 H 0.12 4.03 6.29 -2.91 -0.02 4.01 16 Total: -1.00 -77.88 387.87 0.40 -77.49 By element: Atomic # 1 Polarization: 47.59 SS G_CDS: -1.06 Total: 46.53 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 6.19 Total: 22.63 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -5.62 Total: -123.97 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -1.01 Total: -62.77 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Total: -77.88 0.40 -77.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348511300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.763 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds