Wall clock time and date at job start Wed Apr 1 2020 04:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86808 * 119.99833 * 2 1 4 4 H 1.48505 * 109.46705 * 269.99656 * 3 2 1 5 5 H 1.48492 * 109.47138 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47117 * 149.99851 * 3 2 1 7 7 C 1.38954 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99752 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99530 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99894 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47075 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00211 * 180.02562 * 13 12 10 15 15 O 1.21594 * 119.99696 * 359.72666 * 14 13 12 16 16 N 1.34778 * 120.00551 * 179.72126 * 14 13 12 17 17 C 1.40166 * 120.00157 * 175.69367 * 16 14 13 18 18 C 1.38714 * 120.08959 * 30.22352 * 17 16 14 19 19 C 1.38203 * 119.98482 * 179.97438 * 18 17 16 20 20 C 1.38269 * 120.16076 * 0.02562 * 19 18 17 21 21 C 1.38246 * 120.17901 * 359.97438 * 20 19 18 22 22 C 1.38539 * 120.01183 * 359.74698 * 21 20 19 23 23 O 1.35988 * 120.07854 * 180.25284 * 22 21 20 24 24 C 1.42897 * 117.00299 * 5.28586 * 23 22 21 25 25 C 1.54265 * 110.02906 * 273.31362 * 24 23 22 26 26 C 1.54895 * 104.19597 * 217.10209 * 25 24 23 27 27 C 1.54891 * 102.74613 * 37.94374 * 26 25 24 28 28 C 1.53875 * 110.03213 * 156.14548 * 24 23 22 29 29 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00069 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46927 * 60.00102 * 12 10 9 32 32 H 1.09003 * 109.46871 * 300.00449 * 12 10 9 33 33 H 0.97001 * 120.00205 * 359.72387 * 13 12 10 34 34 H 0.97000 * 119.99615 * 355.69768 * 16 14 13 35 35 H 1.08003 * 120.00290 * 359.94941 * 18 17 16 36 36 H 1.08007 * 119.91507 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.90559 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.99363 * 179.97438 * 21 20 19 39 39 H 1.09001 * 110.01291 * 34.75640 * 24 23 22 40 40 H 1.08999 * 110.49023 * 335.78234 * 25 24 23 41 41 H 1.09001 * 110.48472 * 98.42755 * 25 24 23 42 42 H 1.08996 * 110.75366 * 279.63355 * 26 25 24 43 43 H 1.08996 * 110.91537 * 156.33228 * 26 25 24 44 44 H 1.08998 * 110.48350 * 203.38003 * 27 26 25 45 45 H 1.09005 * 110.48371 * 80.73383 * 27 26 25 46 46 H 1.08994 * 110.03321 * 238.56420 * 28 24 23 47 47 H 1.08997 * 110.03090 * 359.95558 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0537 -2.3704 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5608 -2.3704 0.0021 13 7 6.0491 -3.7516 0.0027 14 6 7.3741 -3.9979 0.0034 15 8 8.1643 -3.0737 -0.0016 16 7 7.8235 -5.2686 0.0096 17 6 9.1983 -5.5262 -0.0809 18 6 10.1115 -4.6170 0.4324 19 6 11.4665 -4.8735 0.3425 20 6 11.9153 -6.0349 -0.2588 21 6 11.0111 -6.9457 -0.7726 22 6 9.6510 -6.6987 -0.6812 23 8 8.7601 -7.5961 -1.1816 24 6 9.2895 -8.8249 -1.6834 25 6 9.7001 -8.6590 -3.1611 26 6 9.3266 -10.0133 -3.8135 27 6 7.9985 -10.3791 -3.1053 28 6 8.2075 -9.9185 -1.6478 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3632 0.0014 31 1 5.9240 -1.8558 0.8916 32 1 5.9241 -1.8573 -0.8883 33 1 5.4188 -4.4889 0.0071 34 1 7.1954 -6.0047 0.0767 35 1 9.7636 -3.7086 0.9018 36 1 12.1766 -4.1645 0.7421 37 1 12.9752 -6.2310 -0.3272 38 1 11.3649 -7.8518 -1.2419 39 1 10.1497 -9.1313 -1.0881 40 1 9.1408 -7.8457 -3.6235 41 1 10.7722 -8.4798 -3.2413 42 1 10.0913 -10.7633 -3.6114 43 1 9.1734 -9.8992 -4.8866 44 1 7.8289 -11.4550 -3.1447 45 1 7.1643 -9.8434 -3.5586 46 1 8.5431 -10.7559 -1.0362 47 1 7.2790 -9.5121 -1.2470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348806196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:28 Heat of formation + Delta-G solvation = -73.882796 kcal Electronic energy + Delta-G solvation = -29601.997156 eV Core-core repulsion = 25364.113483 eV Total energy + Delta-G solvation = -4237.883673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01863 -39.96990 -38.65875 -38.06731 -36.36586 -34.81216 -34.50720 -33.79780 -31.81455 -30.38022 -29.84759 -29.11860 -28.20828 -27.41780 -24.44631 -23.29657 -22.42872 -21.17762 -20.90542 -20.34951 -19.66150 -18.87717 -18.80261 -18.05859 -17.31905 -16.28439 -15.93036 -15.77364 -15.58465 -15.39659 -15.24997 -14.89407 -14.68290 -14.54018 -14.16605 -14.02071 -13.99191 -13.75134 -13.23457 -13.10196 -12.66586 -12.50980 -12.27199 -12.17983 -12.11409 -11.89513 -11.74193 -11.57572 -11.48866 -11.24456 -11.08943 -11.01169 -10.80691 -10.64775 -10.50313 -10.07140 -9.92698 -9.70735 -8.99524 -8.78774 -8.65473 -8.31517 -7.85629 -6.41482 -3.94163 1.20176 1.29373 2.58550 2.92779 2.99251 3.04103 3.12364 3.15931 3.55323 3.73015 4.02891 4.07634 4.12915 4.18410 4.44577 4.56600 4.66424 4.71322 4.86102 4.98716 5.02948 5.07872 5.12325 5.13394 5.20798 5.29377 5.40561 5.45190 5.47917 5.58702 5.63980 5.68649 5.74967 5.76475 5.81484 5.81716 5.90105 6.02188 6.13171 6.38096 6.45462 6.58510 6.77310 6.94903 7.27426 7.43901 7.98110 8.04052 8.42916 8.58741 8.80819 9.28838 9.62168 10.70607 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002136 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.707883 B =13103.487269 C =14715.002027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.125 3.875 13 N -0.718 5.718 14 C 0.706 3.294 15 O -0.583 6.583 16 N -0.677 5.677 17 C 0.145 3.855 18 C -0.093 4.093 19 C -0.137 4.137 20 C -0.105 4.105 21 C -0.192 4.192 22 C 0.098 3.902 23 O -0.309 6.309 24 C 0.082 3.918 25 C -0.148 4.148 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.122 4.122 29 H 0.276 0.724 30 H 0.375 0.625 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.141 -17.523 -3.138 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.003 4.003 13 N -0.375 5.375 14 C 0.407 3.593 15 O -0.462 6.462 16 N -0.324 5.324 17 C 0.049 3.951 18 C -0.113 4.113 19 C -0.156 4.156 20 C -0.124 4.124 21 C -0.211 4.211 22 C 0.051 3.949 23 O -0.223 6.223 24 C 0.026 3.974 25 C -0.186 4.186 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.160 4.160 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.247 0.753 35 H 0.173 0.827 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.880 -17.193 -3.170 29.595 hybrid contribution 0.138 0.626 -0.051 0.643 sum 24.018 -16.567 -3.221 29.355 Atomic orbital electron populations 1.69614 1.05718 1.27832 1.48115 1.25071 0.95540 0.98190 0.97120 0.86669 0.79924 0.83742 0.79159 1.19375 1.19977 1.19188 1.19438 0.78930 0.96799 1.48689 0.86077 1.42109 1.07702 1.06115 1.65398 1.19626 0.88022 0.84905 0.85072 1.90542 1.69213 1.30901 1.55662 1.20851 0.93515 0.82495 1.03448 1.44746 1.04917 1.09681 1.78199 1.15784 0.82840 0.82704 0.78001 1.90858 1.54544 1.43009 1.57746 1.42360 1.05921 1.07463 1.76684 1.16896 0.82978 0.94250 1.00975 1.21451 0.91972 0.99809 0.98099 1.20999 0.95220 0.97720 1.01671 1.20890 0.99147 0.94046 0.98325 1.21010 0.91356 1.01998 1.06722 1.18682 0.88928 0.90888 0.96434 1.86130 1.34321 1.26814 1.75036 1.23149 0.97090 0.82760 0.94399 1.22953 1.01688 0.98975 0.94997 1.22443 0.97378 0.96343 0.99955 1.22358 0.98020 1.01144 0.94629 1.22216 0.99411 0.96420 0.97929 0.91371 0.79208 0.89652 0.89643 0.75216 0.75339 0.82658 0.85695 0.86013 0.85320 0.90610 0.90054 0.91074 0.91304 0.91038 0.91176 0.91013 0.90510 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.91 13.96 55.50 0.77 -24.13 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.96 27.74 -169.99 -4.72 14.24 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.32 5.09 -10.96 -0.06 -13.38 16 10 C 0.44 9.57 7.85 -10.98 -0.09 9.49 16 11 O -0.58 -14.55 15.24 5.54 0.08 -14.47 16 12 C 0.13 2.16 6.15 -5.19 -0.03 2.13 16 13 N -0.72 -11.58 5.53 -66.41 -0.37 -11.94 16 14 C 0.71 11.22 8.43 -86.92 -0.73 10.49 16 15 O -0.58 -10.56 13.50 5.28 0.07 -10.49 16 16 N -0.68 -9.04 5.25 -14.10 -0.07 -9.11 16 17 C 0.15 1.92 6.40 -83.48 -0.53 1.38 16 18 C -0.09 -1.22 8.74 -39.42 -0.34 -1.56 16 19 C -0.14 -1.45 10.04 -39.58 -0.40 -1.85 16 20 C -0.10 -0.97 10.04 -39.57 -0.40 -1.37 16 21 C -0.19 -1.84 8.79 -39.47 -0.35 -2.19 16 22 C 0.10 1.13 6.65 -39.08 -0.26 0.87 16 23 O -0.31 -3.31 9.19 -19.70 -0.18 -3.49 16 24 C 0.08 0.65 2.80 -25.61 -0.07 0.57 16 25 C -0.15 -1.08 6.12 -25.07 -0.15 -1.23 16 26 C -0.12 -0.72 6.91 -24.73 -0.17 -0.89 16 27 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 28 C -0.12 -0.83 6.61 -25.61 -0.17 -1.00 16 29 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.41 6.50 7.45 -40.82 -0.30 6.19 16 34 H 0.41 4.71 8.47 -40.82 -0.35 4.36 16 35 H 0.16 2.27 5.86 -52.48 -0.31 1.96 16 36 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 0.95 5.37 -52.48 -0.28 0.67 16 39 H 0.08 0.52 6.32 -51.93 -0.33 0.19 16 40 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.07 0.46 7.55 -51.93 -0.39 0.06 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.64 7.95 -51.93 -0.41 0.23 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -32.66 385.87 -9.15 -41.81 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -6.39 Total: 18.79 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -4.12 Total: 6.35 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.28 Total: -58.57 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.03 Total: -28.44 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.72 Total: 14.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.66 -9.15 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348806196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.073 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds