Wall clock time and date at job start Wed Apr 1 2020 04:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86808 * 119.99833 * 2 1 4 4 H 1.48505 * 109.46705 * 269.99656 * 3 2 1 5 5 H 1.48492 * 109.47138 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47117 * 149.99851 * 3 2 1 7 7 C 1.38954 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99752 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99530 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99894 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47075 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00211 * 180.02562 * 13 12 10 15 15 O 1.21594 * 119.99696 * 359.72666 * 14 13 12 16 16 N 1.34778 * 120.00551 * 179.72126 * 14 13 12 17 17 C 1.40166 * 120.00157 * 175.69367 * 16 14 13 18 18 C 1.38714 * 120.08959 * 30.22352 * 17 16 14 19 19 C 1.38203 * 119.98482 * 179.97438 * 18 17 16 20 20 C 1.38269 * 120.16076 * 0.02562 * 19 18 17 21 21 C 1.38246 * 120.17901 * 359.97438 * 20 19 18 22 22 C 1.38539 * 120.01183 * 359.74698 * 21 20 19 23 23 O 1.35988 * 120.07854 * 180.25284 * 22 21 20 24 24 C 1.42897 * 117.00299 * 5.28586 * 23 22 21 25 25 C 1.54265 * 110.02906 * 273.31362 * 24 23 22 26 26 C 1.54895 * 104.19597 * 217.10209 * 25 24 23 27 27 C 1.54891 * 102.74613 * 37.94374 * 26 25 24 28 28 C 1.53875 * 110.03213 * 156.14548 * 24 23 22 29 29 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00069 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46927 * 60.00102 * 12 10 9 32 32 H 1.09003 * 109.46871 * 300.00449 * 12 10 9 33 33 H 0.97001 * 120.00205 * 359.72387 * 13 12 10 34 34 H 0.97000 * 119.99615 * 355.69768 * 16 14 13 35 35 H 1.08003 * 120.00290 * 359.94941 * 18 17 16 36 36 H 1.08007 * 119.91507 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.90559 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.99363 * 179.97438 * 21 20 19 39 39 H 1.09001 * 110.01291 * 34.75640 * 24 23 22 40 40 H 1.08999 * 110.49023 * 335.78234 * 25 24 23 41 41 H 1.09001 * 110.48472 * 98.42755 * 25 24 23 42 42 H 1.08996 * 110.75366 * 279.63355 * 26 25 24 43 43 H 1.08996 * 110.91537 * 156.33228 * 26 25 24 44 44 H 1.08998 * 110.48350 * 203.38003 * 27 26 25 45 45 H 1.09005 * 110.48371 * 80.73383 * 27 26 25 46 46 H 1.08994 * 110.03321 * 238.56420 * 28 24 23 47 47 H 1.08997 * 110.03090 * 359.95558 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0537 -2.3704 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5608 -2.3704 0.0021 13 7 6.0491 -3.7516 0.0027 14 6 7.3741 -3.9979 0.0034 15 8 8.1643 -3.0737 -0.0016 16 7 7.8235 -5.2686 0.0096 17 6 9.1983 -5.5262 -0.0809 18 6 10.1115 -4.6170 0.4324 19 6 11.4665 -4.8735 0.3425 20 6 11.9153 -6.0349 -0.2588 21 6 11.0111 -6.9457 -0.7726 22 6 9.6510 -6.6987 -0.6812 23 8 8.7601 -7.5961 -1.1816 24 6 9.2895 -8.8249 -1.6834 25 6 9.7001 -8.6590 -3.1611 26 6 9.3266 -10.0133 -3.8135 27 6 7.9985 -10.3791 -3.1053 28 6 8.2075 -9.9185 -1.6478 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3632 0.0014 31 1 5.9240 -1.8558 0.8916 32 1 5.9241 -1.8573 -0.8883 33 1 5.4188 -4.4889 0.0071 34 1 7.1954 -6.0047 0.0767 35 1 9.7636 -3.7086 0.9018 36 1 12.1766 -4.1645 0.7421 37 1 12.9752 -6.2310 -0.3272 38 1 11.3649 -7.8518 -1.2419 39 1 10.1497 -9.1313 -1.0881 40 1 9.1408 -7.8457 -3.6235 41 1 10.7722 -8.4798 -3.2413 42 1 10.0913 -10.7633 -3.6114 43 1 9.1734 -9.8992 -4.8866 44 1 7.8289 -11.4550 -3.1447 45 1 7.1643 -9.8434 -3.5586 46 1 8.5431 -10.7559 -1.0362 47 1 7.2790 -9.5121 -1.2470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348806196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:27 Heat of formation + Delta-G solvation = -96.776919 kcal Electronic energy + Delta-G solvation = -29602.989920 eV Core-core repulsion = 25364.113483 eV Total energy + Delta-G solvation = -4238.876437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.98829 -41.02351 -40.24894 -38.99832 -37.03919 -36.33818 -35.78574 -35.40108 -33.84439 -31.23328 -30.77460 -29.65894 -29.16658 -28.55543 -26.25800 -24.20323 -23.31658 -21.99107 -21.68741 -21.50036 -21.07284 -20.57026 -19.80440 -19.30318 -18.28683 -17.50227 -17.13473 -16.87904 -16.81665 -16.47196 -16.30176 -16.15393 -15.84725 -15.57799 -15.53437 -15.05371 -14.94376 -14.82698 -14.34689 -14.29611 -14.03111 -13.96338 -13.82247 -13.28832 -12.97182 -12.84131 -12.67081 -12.50433 -12.45188 -12.07853 -12.00493 -11.98084 -11.69710 -11.59874 -11.58856 -11.52299 -11.37862 -11.07524 -10.67645 -10.35956 -10.26741 -9.51581 -8.75946 -8.46165 -6.08334 0.34025 0.46811 1.30820 1.33941 1.40263 1.45191 1.77260 1.98077 2.19782 2.20301 2.73993 2.86713 3.09978 3.14698 3.54999 3.59979 3.87637 3.95479 3.97338 4.06096 4.20387 4.33807 4.40591 4.41697 4.44885 4.49231 4.51693 4.53752 4.65932 4.72991 4.83195 4.90385 5.01358 5.11775 5.15858 5.19148 5.21291 5.25066 5.35571 5.42075 5.47637 5.53003 5.65317 5.83496 5.87456 5.92284 6.47662 6.50192 6.77024 6.83356 7.26485 7.36689 7.76873 8.70210 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002136 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.707883 B =13103.487269 C =14715.002027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.721 5.721 14 C 0.707 3.293 15 O -0.605 6.605 16 N -0.668 5.668 17 C 0.112 3.888 18 C -0.111 4.111 19 C -0.142 4.142 20 C -0.095 4.095 21 C -0.189 4.189 22 C 0.094 3.906 23 O -0.324 6.324 24 C 0.075 3.925 25 C -0.148 4.148 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.410 0.590 34 H 0.417 0.583 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.117 -17.650 -3.471 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.378 5.378 14 C 0.408 3.592 15 O -0.486 6.486 16 N -0.315 5.315 17 C 0.017 3.983 18 C -0.132 4.132 19 C -0.161 4.161 20 C -0.114 4.114 21 C -0.208 4.208 22 C 0.047 3.953 23 O -0.239 6.239 24 C 0.020 3.980 25 C -0.186 4.186 26 C -0.156 4.156 27 C -0.163 4.163 28 C -0.160 4.160 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.248 0.752 34 H 0.254 0.746 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 27.891 -17.362 -3.503 33.040 hybrid contribution -1.069 0.455 0.033 1.162 sum 26.822 -16.908 -3.471 31.896 Atomic orbital electron populations 1.69777 1.08038 1.29482 1.49208 1.26081 0.96450 1.02634 0.95689 0.85443 0.79617 0.76974 0.80088 1.18097 1.19793 1.15490 1.19022 0.80932 0.95266 1.50815 0.91885 1.41904 1.06135 1.07395 1.66223 1.20478 0.89994 0.83891 0.82376 1.90531 1.70787 1.32349 1.56426 1.20753 0.89321 0.83594 1.05336 1.44707 1.05179 1.09256 1.78669 1.15806 0.82295 0.83284 0.77833 1.90844 1.54910 1.43916 1.58882 1.42226 1.06560 1.06697 1.76059 1.17157 0.82564 0.95596 1.02968 1.21394 0.93337 0.99368 0.99082 1.21259 0.94397 0.98791 1.01630 1.21296 1.00840 0.92857 0.96380 1.21357 0.90470 1.02930 1.06062 1.18797 0.89878 0.90488 0.96148 1.86126 1.35010 1.27701 1.75047 1.23422 0.97932 0.81854 0.94836 1.22942 1.02063 0.99039 0.94540 1.22448 0.97447 0.95865 0.99863 1.22372 0.97898 1.01828 0.94154 1.22264 0.98554 0.96636 0.98587 0.90899 0.77155 0.87534 0.87737 0.75207 0.74608 0.84792 0.83813 0.82604 0.82764 0.89011 0.92367 0.89828 0.89552 0.90875 0.89760 0.92443 0.88754 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.96 21.66 0.30 -54.24 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 0.96 38.20 27.74 68.60 1.90 40.10 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 7 C -0.33 -18.89 10.16 84.04 0.85 -18.03 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -26.62 5.09 -306.97 -1.56 -28.18 16 10 C 0.45 19.55 7.85 87.66 0.69 20.24 16 11 O -0.61 -31.99 15.24 -3.08 -0.05 -32.03 16 12 C 0.14 4.59 6.15 85.63 0.53 5.12 16 13 N -0.72 -23.11 5.53 -482.30 -2.67 -25.78 16 14 C 0.71 22.47 8.43 179.06 1.51 23.98 16 15 O -0.61 -21.79 13.50 -4.01 -0.05 -21.84 16 16 N -0.67 -18.08 5.25 -316.79 -1.66 -19.74 16 17 C 0.11 2.95 6.40 38.17 0.24 3.19 16 18 C -0.11 -2.88 8.74 22.38 0.20 -2.69 16 19 C -0.14 -2.74 10.04 22.27 0.22 -2.52 16 20 C -0.10 -1.45 10.04 22.28 0.22 -1.23 16 21 C -0.19 -3.12 8.79 22.34 0.20 -2.92 16 22 C 0.09 2.07 6.65 22.59 0.15 2.22 16 23 O -0.32 -6.74 9.19 -93.42 -0.86 -7.60 16 24 C 0.08 1.05 2.80 31.32 0.09 1.14 16 25 C -0.15 -1.90 6.12 31.67 0.19 -1.71 16 26 C -0.12 -1.14 6.91 31.89 0.22 -0.92 16 27 C -0.12 -1.38 6.83 31.67 0.22 -1.16 16 28 C -0.12 -1.52 6.61 31.32 0.21 -1.31 16 29 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 31 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.41 13.24 7.45 -92.71 -0.69 12.54 16 34 H 0.42 9.85 8.47 -92.71 -0.79 9.06 16 35 H 0.13 4.01 5.86 -2.91 -0.02 3.99 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.15 1.69 5.37 -2.91 -0.02 1.67 16 39 H 0.09 0.98 6.32 -2.39 -0.02 0.97 16 40 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 41 H 0.08 0.84 7.55 -2.39 -0.02 0.83 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 1.05 7.95 -2.39 -0.02 1.03 16 Total: -1.00 -75.31 385.87 0.53 -74.78 By element: Atomic # 1 Polarization: 52.16 SS G_CDS: -1.03 Total: 51.14 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.21 Total: 23.40 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.59 Total: -127.94 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.96 Total: -61.48 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.10 kcal Total: -75.31 0.53 -74.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348806196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.998 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds