Wall clock time and date at job start Wed Apr 1 2020 04:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 120.00258 * 2 1 4 4 H 1.48501 * 109.47178 * 270.00026 * 3 2 1 5 5 H 1.48493 * 109.46941 * 30.00017 * 3 2 1 6 6 H 1.48496 * 109.47234 * 150.00132 * 3 2 1 7 7 C 1.38955 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99708 * 359.97438 * 7 2 1 9 9 N 1.37090 * 120.00170 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00693 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99575 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00779 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47595 * 174.26965 * 12 10 9 14 14 C 1.46842 * 111.00441 * 169.67819 * 13 12 10 15 15 C 1.53039 * 109.52805 * 185.84147 * 14 13 12 16 16 C 1.53122 * 109.27613 * 300.82160 * 15 14 13 17 17 C 1.50697 * 109.52116 * 177.55631 * 16 15 14 18 18 O 1.21290 * 120.00238 * 240.31023 * 17 16 15 19 19 N 1.34775 * 119.99902 * 60.31931 * 17 16 15 20 20 C 1.40113 * 120.00064 * 184.81198 * 19 17 16 21 21 C 1.38842 * 120.01240 * 212.64677 * 20 19 17 22 22 C 1.38095 * 119.98000 * 179.72063 * 21 20 19 23 23 C 1.38720 * 120.01423 * 0.54867 * 22 21 20 24 24 O 1.35978 * 119.98507 * 179.70255 * 23 22 21 25 25 C 1.38720 * 120.03125 * 359.72724 * 23 22 21 26 26 C 1.38090 * 120.01439 * 359.97438 * 25 23 22 27 27 C 1.53121 * 109.16084 * 57.65162 * 16 15 14 28 28 C 1.46847 * 111.00043 * 293.88963 * 13 12 10 29 29 H 0.97000 * 119.99741 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99960 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47161 * 294.27178 * 12 10 9 32 32 H 1.09000 * 109.47174 * 54.26760 * 12 10 9 33 33 H 1.09004 * 109.46208 * 305.85824 * 14 13 12 34 34 H 1.09001 * 109.46486 * 65.82096 * 14 13 12 35 35 H 1.08994 * 109.50655 * 180.87791 * 15 14 13 36 36 H 1.09002 * 109.50135 * 60.76069 * 15 14 13 37 37 H 1.08996 * 109.57511 * 297.71680 * 16 15 14 38 38 H 0.97004 * 120.00437 * 4.81133 * 19 17 16 39 39 H 1.07992 * 120.01603 * 359.97012 * 21 20 19 40 40 H 1.08007 * 119.99282 * 180.27308 * 22 21 20 41 41 H 0.96698 * 113.99889 * 270.02457 * 24 23 22 42 42 H 1.08003 * 119.99463 * 179.97438 * 25 23 22 43 43 H 1.07997 * 120.00275 * 179.97438 * 26 25 23 44 44 H 1.09002 * 109.49835 * 182.40739 * 27 16 15 45 45 H 1.08998 * 109.53420 * 62.30871 * 27 16 15 46 46 H 1.09000 * 109.46199 * 294.17511 * 28 13 12 47 47 H 1.09003 * 109.46129 * 54.15447 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5606 -2.3708 0.0000 13 7 6.0502 -3.7488 0.1383 14 6 7.4972 -3.8198 -0.1015 15 6 7.9460 -5.2829 -0.0932 16 6 7.6028 -5.9092 1.2613 17 6 7.9879 -7.3661 1.2544 18 8 7.1423 -8.2177 1.4299 19 7 9.2720 -7.7228 1.0535 20 6 9.6143 -9.0772 0.9465 21 6 10.8477 -9.5201 1.4052 22 6 11.1821 -10.8562 1.3046 23 6 10.2907 -11.7536 0.7351 24 8 10.6231 -13.0681 0.6309 25 6 9.0606 -11.3107 0.2714 26 6 8.7224 -9.9761 0.3770 27 6 6.0973 -5.7790 1.5083 28 6 5.7022 -4.3015 1.4535 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3634 0.0004 31 1 5.9240 -1.9484 -0.9368 32 1 5.9240 -1.7707 0.8342 33 1 7.7272 -3.3748 -1.0696 34 1 8.0225 -3.2743 0.6826 35 1 9.0225 -5.3343 -0.2557 36 1 7.4314 -5.8258 -0.8860 37 1 8.1475 -5.3921 2.0512 38 1 9.9592 -7.0418 0.9831 39 1 11.5437 -8.8208 1.8442 40 1 12.1397 -11.2017 1.6654 41 1 11.0737 -13.2956 -0.1939 42 1 8.3672 -12.0099 -0.1722 43 1 7.7649 -9.6314 0.0156 44 1 5.8532 -6.1848 2.4900 45 1 5.5531 -6.3299 0.7411 46 1 6.2358 -3.7538 2.2303 47 1 4.6283 -4.2066 1.6147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357605247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:50 Heat of formation + Delta-G solvation = -106.131715 kcal Electronic energy + Delta-G solvation = -29496.705471 eV Core-core repulsion = 25257.423380 eV Total energy + Delta-G solvation = -4239.282091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.87696 -40.71443 -40.17022 -38.92940 -37.72875 -35.99773 -35.39731 -34.47252 -33.70651 -32.02008 -31.77209 -30.05540 -28.93387 -26.65355 -24.90765 -24.25588 -23.99278 -23.15965 -21.66877 -21.22857 -20.62639 -20.17995 -19.36999 -18.87441 -18.14023 -17.71490 -16.91844 -16.78373 -16.61005 -16.41679 -16.26814 -15.77922 -15.67010 -15.40273 -15.21455 -14.99147 -14.83880 -14.51122 -14.41629 -14.30114 -14.03078 -13.84929 -13.73928 -13.31088 -13.21302 -13.01823 -12.94600 -12.75852 -12.40663 -12.27949 -12.15368 -11.97005 -11.69095 -11.56231 -11.54905 -11.36695 -11.23920 -10.80220 -10.32658 -10.21150 -10.00568 -9.11727 -9.00533 -8.39643 -6.00445 0.11865 0.33346 1.30631 1.37175 1.45812 1.51017 1.97217 2.00261 2.24653 2.66561 2.67981 3.16558 3.24096 3.33302 3.49261 3.72487 3.81510 3.93067 3.97956 4.12365 4.23281 4.31992 4.33641 4.35168 4.42977 4.50823 4.53019 4.57844 4.58654 4.71046 4.81594 4.87978 4.99057 5.02100 5.10364 5.13610 5.19223 5.28976 5.36286 5.42289 5.45065 5.55333 5.88582 5.93350 6.07976 6.31403 6.39167 6.62740 6.87201 6.91487 7.09998 7.43159 8.02258 8.78381 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.001700 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.650583 B =16462.123100 C =16925.464469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.018 4.018 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.229 1.229 7 C -0.328 4.328 8 H 0.051 0.949 9 N -0.593 5.593 10 C 0.447 3.553 11 O -0.608 6.608 12 C 0.057 3.943 13 N -0.546 5.546 14 C 0.056 3.944 15 C -0.100 4.100 16 C -0.094 4.094 17 C 0.519 3.481 18 O -0.563 6.563 19 N -0.657 5.657 20 C 0.127 3.873 21 C -0.120 4.120 22 C -0.126 4.126 23 C 0.082 3.918 24 O -0.511 6.511 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.088 4.088 28 C 0.061 3.939 29 H 0.278 0.722 30 H 0.390 0.610 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.133 0.867 38 H 0.431 0.569 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.409 0.591 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.687 -11.446 1.241 36.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.152 1.152 7 C -0.457 4.457 8 H 0.069 0.931 9 N -0.235 5.235 10 C 0.235 3.765 11 O -0.492 6.492 12 C -0.074 4.074 13 N -0.272 5.272 14 C -0.070 4.070 15 C -0.138 4.138 16 C -0.115 4.115 17 C 0.309 3.691 18 O -0.440 6.440 19 N -0.303 5.303 20 C 0.033 3.967 21 C -0.140 4.140 22 C -0.145 4.145 23 C 0.037 3.963 24 O -0.324 6.324 25 C -0.159 4.159 26 C -0.148 4.148 27 C -0.126 4.126 28 C -0.067 4.067 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.142 0.858 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.271 0.729 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.268 0.732 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 32.984 -12.921 1.542 35.458 hybrid contribution -0.362 1.308 -0.005 1.357 sum 32.621 -11.613 1.538 34.661 Atomic orbital electron populations 1.69818 1.08262 1.29192 1.50561 1.26155 0.96474 1.02837 0.96115 0.85325 0.79488 0.76475 0.79949 1.18101 1.20205 1.15201 1.18984 0.81673 0.94779 1.50264 0.93075 1.42038 1.05670 1.07640 1.68175 1.21086 0.91207 0.83204 0.80966 1.90554 1.71417 1.32800 1.54442 1.21806 0.89785 0.90985 1.04776 1.61380 1.15613 1.18693 1.31472 1.22239 0.85072 0.96666 1.03052 1.21613 1.02884 0.95220 0.94038 1.21400 0.97347 0.90531 1.02212 1.21240 0.81706 0.92080 0.74121 1.90737 1.50868 1.53748 1.48632 1.43448 1.09638 1.06099 1.71163 1.17953 0.95464 0.84511 0.98803 1.21076 0.95995 0.96415 1.00510 1.21509 1.00553 0.92210 1.00184 1.18570 0.93287 0.84009 1.00429 1.84807 1.80521 1.21404 1.45633 1.21434 0.97704 0.95418 1.01385 1.21040 1.00123 0.93505 1.00095 1.21241 0.94621 0.95297 1.01465 1.22019 1.00604 0.94842 0.89209 0.91232 0.77471 0.85775 0.90111 0.88560 0.91859 0.86618 0.92768 0.84937 0.72918 0.81805 0.82589 0.73198 0.85124 0.86842 0.91773 0.93865 0.93047 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.96 21.66 0.30 -56.92 16 2 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 3 Si 0.97 38.62 27.74 68.60 1.90 40.52 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 7 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 9 N -0.59 -27.90 5.09 -306.99 -1.56 -29.46 16 10 C 0.45 20.20 7.33 87.66 0.64 20.84 16 11 O -0.61 -34.37 14.23 -3.08 -0.04 -34.41 16 12 C 0.06 1.67 5.45 85.56 0.47 2.14 16 13 N -0.55 -15.43 4.35 -900.94 -3.92 -19.36 16 14 C 0.06 0.91 5.46 86.33 0.47 1.38 16 15 C -0.10 -1.42 5.27 30.65 0.16 -1.26 16 16 C -0.09 -1.64 2.59 -11.46 -0.03 -1.67 16 17 C 0.52 10.91 6.90 87.66 0.61 11.52 16 18 O -0.56 -17.77 13.62 -3.06 -0.04 -17.81 16 19 N -0.66 -8.89 5.23 -303.40 -1.59 -10.47 16 20 C 0.13 2.16 6.29 38.11 0.24 2.40 16 21 C -0.12 -1.38 9.96 22.38 0.22 -1.15 16 22 C -0.13 -1.54 9.98 22.35 0.22 -1.32 16 23 C 0.08 1.33 6.70 22.50 0.15 1.48 16 24 O -0.51 -7.01 13.50 -93.31 -1.26 -8.27 16 25 C -0.14 -2.75 9.98 22.35 0.22 -2.53 16 26 C -0.13 -2.83 8.65 22.38 0.19 -2.64 16 27 C -0.09 -2.46 4.68 30.65 0.14 -2.31 16 28 C 0.06 1.85 5.11 86.33 0.44 2.29 16 29 H 0.28 15.51 8.31 -92.71 -0.77 14.73 16 30 H 0.39 14.93 5.76 -92.70 -0.53 14.40 16 31 H 0.12 2.85 7.98 -2.39 -0.02 2.83 16 32 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 33 H 0.10 1.29 8.01 -2.39 -0.02 1.27 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 0.63 7.79 -2.39 -0.02 0.61 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.43 1.98 8.46 -92.71 -0.78 1.19 16 39 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.41 1.43 9.06 -74.06 -0.67 0.75 16 42 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.11 3.10 6.37 -2.91 -0.02 3.09 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 46 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 Total: -1.00 -92.33 384.65 -1.75 -94.08 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -1.02 Total: 32.03 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.48 Total: 10.08 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.77 Total: -116.21 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -1.35 Total: -60.50 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -92.33 -1.75 -94.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357605247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.055 kcal (2) G-P(sol) polarization free energy of solvation -92.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds