Wall clock time and date at job start Wed Apr 1 2020 04:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47149 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.47111 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.46995 * 150.00040 * 3 2 1 7 7 C 1.38948 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00003 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00324 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99852 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.46937 * 180.02562 * 12 10 9 14 14 C 1.34776 * 119.99930 * 180.02562 * 13 12 10 15 15 O 1.21579 * 120.00167 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99893 * 179.97438 * 14 13 12 17 17 C 1.47317 * 125.61861 * 359.77399 * 16 14 13 18 18 C 1.54323 * 107.12157 * 178.89316 * 17 16 14 19 19 C 1.55153 * 103.10236 * 338.02434 * 18 17 16 20 20 H 1.09003 * 111.00424 * 277.34027 * 19 18 17 21 21 C 1.53000 * 111.00826 * 153.48934 * 19 18 17 22 22 O 1.42893 * 109.47561 * 175.00371 * 21 19 18 23 23 C 1.35902 * 117.00242 * 180.02562 * 22 21 19 24 24 C 1.38731 * 120.05279 * 359.71659 * 23 22 21 25 25 C 1.38149 * 119.94339 * 179.74736 * 24 23 22 26 26 C 1.38267 * 120.05341 * 0.51421 * 25 24 23 27 27 C 1.38271 * 120.11168 * 359.76164 * 26 25 24 28 28 C 1.38145 * 120.05644 * 359.97438 * 27 26 25 29 29 C 1.47427 * 125.64626 * 180.02562 * 16 14 13 30 30 H 0.96997 * 119.99671 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99638 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47148 * 60.00313 * 12 10 9 33 33 H 1.09005 * 109.46800 * 300.00101 * 12 10 9 34 34 H 0.97000 * 120.00549 * 359.97438 * 13 12 10 35 35 H 1.09000 * 109.84974 * 59.58315 * 17 16 14 36 36 H 1.09003 * 110.06268 * 298.32593 * 17 16 14 37 37 H 1.09002 * 110.72057 * 219.57186 * 18 17 16 38 38 H 1.09003 * 110.71837 * 96.47759 * 18 17 16 39 39 H 1.09004 * 109.46811 * 295.00036 * 21 19 18 40 40 H 1.08999 * 109.46975 * 54.99711 * 21 19 18 41 41 H 1.07998 * 120.02784 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.97437 * 180.22889 * 25 24 23 43 43 H 1.07998 * 119.94181 * 179.74653 * 26 25 24 44 44 H 1.07996 * 119.97417 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.02678 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.37285 * 85.24728 * 29 16 14 47 47 H 1.09000 * 110.45726 * 322.97239 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1955 -5.9765 0.0007 14 6 1.7462 -7.2472 -0.0002 15 8 0.5509 -7.4693 -0.0011 16 7 2.6220 -8.2716 0.0000 17 6 4.0898 -8.1455 -0.0037 18 6 4.6687 -9.5757 0.0265 19 6 3.5020 -10.4152 0.6108 20 1 3.4861 -10.3576 1.6992 21 6 3.5840 -11.8693 0.1420 22 8 2.5667 -12.6365 0.7888 23 6 2.5014 -13.9586 0.4812 24 6 3.3944 -14.5050 -0.4291 25 6 3.3294 -15.8503 -0.7363 26 6 2.3685 -16.6499 -0.1453 27 6 1.4737 -16.1065 0.7580 28 6 1.5381 -14.7629 1.0726 29 6 2.2697 -9.7032 -0.0014 30 1 -0.4849 0.8400 0.0004 31 1 0.3533 -2.3906 -0.0002 32 1 0.6173 -4.9205 -0.8903 33 1 0.6165 -4.9208 0.8897 34 1 3.1492 -5.7994 0.0011 35 1 4.4161 -7.5948 0.8785 36 1 4.4187 -7.6314 -0.9068 37 1 5.5423 -9.6246 0.6766 38 1 4.9193 -9.9116 -0.9797 39 1 3.4397 -11.9116 -0.9376 40 1 4.5627 -12.2776 0.3941 41 1 4.1426 -13.8800 -0.8939 42 1 4.0267 -16.2769 -1.4421 43 1 2.3167 -17.7005 -0.3899 44 1 0.7239 -16.7329 1.2179 45 1 0.8392 -14.3390 1.7785 46 1 2.0979 -10.0506 -1.0201 47 1 1.3863 -9.8787 0.6125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358318831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:23 Heat of formation + Delta-G solvation = -74.898912 kcal Electronic energy + Delta-G solvation = -28733.995903 eV Core-core repulsion = 24496.068168 eV Total energy + Delta-G solvation = -4237.927735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.65360 -40.08064 -38.56437 -37.95927 -37.16423 -34.42578 -33.67964 -32.66691 -31.39845 -31.33612 -30.34892 -29.42446 -27.90201 -26.12195 -24.47232 -23.33323 -22.97124 -22.22587 -20.74169 -19.81625 -19.59095 -18.67458 -18.28074 -17.80330 -17.07023 -16.37417 -16.18223 -15.84675 -15.82351 -15.41299 -14.94856 -14.86427 -14.68265 -14.23385 -14.11586 -13.88816 -13.82230 -13.74552 -13.45456 -13.11918 -12.97631 -12.80358 -12.37718 -12.15843 -12.04386 -11.87049 -11.73108 -11.66318 -11.62396 -11.33620 -11.12122 -11.03177 -11.00705 -10.45649 -10.31493 -10.01927 -9.62982 -9.40485 -8.92356 -8.61815 -8.58881 -8.45273 -8.09179 -6.50643 -3.92687 0.93919 1.06164 2.60479 2.77250 3.12034 3.22408 3.27714 3.37508 3.40434 3.75894 3.97898 4.09757 4.15997 4.28503 4.40124 4.44606 4.50894 4.71110 4.77312 4.80167 4.87539 4.90724 4.98941 5.07005 5.12667 5.18107 5.19125 5.27706 5.39567 5.47494 5.60297 5.63939 5.73135 5.83692 5.91352 5.91791 6.00993 6.02078 6.08292 6.14260 6.20523 6.37842 6.76786 7.03667 7.15930 7.46616 7.93129 8.17343 8.46058 8.78843 9.05341 9.40377 9.88264 10.66264 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.037928 B = 0.001469 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.055170 B =19059.289027 C =19605.623459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.723 3.277 15 O -0.594 6.594 16 N -0.641 5.641 17 C 0.099 3.901 18 C -0.120 4.120 19 C -0.103 4.103 20 H 0.099 0.901 21 C 0.072 3.928 22 O -0.311 6.311 23 C 0.133 3.867 24 C -0.211 4.211 25 C -0.081 4.081 26 C -0.162 4.162 27 C -0.081 4.081 28 C -0.153 4.153 29 C 0.136 3.864 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.407 0.593 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.064 0.936 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.534 -30.262 -0.202 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.424 3.576 15 O -0.472 6.472 16 N -0.380 5.380 17 C -0.025 4.025 18 C -0.158 4.158 19 C -0.122 4.122 20 H 0.117 0.883 21 C -0.003 4.003 22 O -0.225 6.225 23 C 0.088 3.912 24 C -0.230 4.230 25 C -0.099 4.099 26 C -0.180 4.180 27 C -0.099 4.099 28 C -0.172 4.172 29 C 0.012 3.988 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.244 0.756 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.082 0.918 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.126 -29.988 -0.069 30.823 hybrid contribution 0.445 0.955 -0.216 1.075 sum 7.571 -29.033 -0.285 30.005 Atomic orbital electron populations 1.69617 1.06006 1.28507 1.49300 1.25321 0.95660 0.99907 0.96801 0.85813 0.79216 0.80518 0.78467 1.20284 1.20800 1.19340 1.19728 0.93454 0.82011 1.48293 0.87694 1.41784 1.09502 1.04427 1.62643 1.19752 0.88283 0.84996 0.85501 1.90483 1.13759 1.86874 1.57403 1.20800 0.91232 0.84826 1.03190 1.44777 1.11285 1.03138 1.78736 1.15344 0.84217 0.79949 0.78051 1.90912 1.13584 1.83883 1.58837 1.47529 1.05673 1.05451 1.79379 1.22054 0.80504 0.97421 1.02473 1.22596 0.97366 0.93576 1.02226 1.22392 0.96060 0.91475 1.02255 0.88259 1.22755 0.90496 0.90033 0.97036 1.86100 1.53647 1.17525 1.65224 1.19039 0.94814 0.83212 0.94183 1.21287 1.02277 0.96977 1.02413 1.20966 0.97645 0.92990 0.98333 1.21080 0.97214 1.00160 0.99565 1.20998 0.98205 0.94065 0.96637 1.20513 0.99869 0.93342 1.03435 1.22017 0.97504 0.78592 1.00666 0.91596 0.76998 0.89983 0.89975 0.75569 0.91011 0.90951 0.89352 0.90106 0.91417 0.91287 0.85463 0.85848 0.85974 0.85370 0.85078 0.91775 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.55 -13.71 5.29 -10.96 -0.06 -13.76 16 10 C 0.43 9.96 7.85 -10.98 -0.09 9.87 16 11 O -0.60 -15.36 15.24 5.55 0.08 -15.28 16 12 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 13 N -0.72 -12.79 5.49 -66.42 -0.36 -13.15 16 14 C 0.72 12.62 8.49 -86.92 -0.74 11.88 16 15 O -0.59 -12.33 16.60 5.30 0.09 -12.25 16 16 N -0.64 -8.50 3.33 -175.99 -0.59 -9.09 16 17 C 0.10 0.96 6.17 -2.90 -0.02 0.94 16 18 C -0.12 -0.76 6.41 -24.90 -0.16 -0.92 16 19 C -0.10 -0.79 3.30 -88.46 -0.29 -1.08 16 20 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 21 C 0.07 0.49 4.19 37.16 0.16 0.64 16 22 O -0.31 -2.90 10.10 -19.43 -0.20 -3.10 16 23 C 0.13 1.19 6.69 -39.22 -0.26 0.93 16 24 C -0.21 -1.58 9.04 -39.43 -0.36 -1.93 16 25 C -0.08 -0.54 10.04 -39.60 -0.40 -0.94 16 26 C -0.16 -1.06 10.04 -39.56 -0.40 -1.45 16 27 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 28 C -0.15 -1.28 9.99 -39.43 -0.39 -1.67 16 29 C 0.14 1.51 6.34 -2.52 -0.02 1.49 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.40 9.54 7.90 -40.82 -0.32 9.21 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.41 7.00 6.42 -40.82 -0.26 6.73 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 39 H 0.07 0.40 7.47 -51.93 -0.39 0.02 16 40 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 41 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 42 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 47 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -33.62 396.20 -9.68 -43.30 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -6.69 Total: 13.72 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -3.63 Total: 11.34 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.28 Total: -59.23 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.02 Total: -30.62 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.62 -9.68 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358318831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.602 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds