Wall clock time and date at job start Wed Apr 1 2020 04:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47149 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.47111 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.46995 * 150.00040 * 3 2 1 7 7 C 1.38948 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00003 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00324 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99852 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.46937 * 180.02562 * 12 10 9 14 14 C 1.34776 * 119.99930 * 180.02562 * 13 12 10 15 15 O 1.21579 * 120.00167 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99893 * 179.97438 * 14 13 12 17 17 C 1.47317 * 125.61861 * 359.77399 * 16 14 13 18 18 C 1.54323 * 107.12157 * 178.89316 * 17 16 14 19 19 C 1.55153 * 103.10236 * 338.02434 * 18 17 16 20 20 H 1.09003 * 111.00424 * 277.34027 * 19 18 17 21 21 C 1.53000 * 111.00826 * 153.48934 * 19 18 17 22 22 O 1.42893 * 109.47561 * 175.00371 * 21 19 18 23 23 C 1.35902 * 117.00242 * 180.02562 * 22 21 19 24 24 C 1.38731 * 120.05279 * 359.71659 * 23 22 21 25 25 C 1.38149 * 119.94339 * 179.74736 * 24 23 22 26 26 C 1.38267 * 120.05341 * 0.51421 * 25 24 23 27 27 C 1.38271 * 120.11168 * 359.76164 * 26 25 24 28 28 C 1.38145 * 120.05644 * 359.97438 * 27 26 25 29 29 C 1.47427 * 125.64626 * 180.02562 * 16 14 13 30 30 H 0.96997 * 119.99671 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99638 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47148 * 60.00313 * 12 10 9 33 33 H 1.09005 * 109.46800 * 300.00101 * 12 10 9 34 34 H 0.97000 * 120.00549 * 359.97438 * 13 12 10 35 35 H 1.09000 * 109.84974 * 59.58315 * 17 16 14 36 36 H 1.09003 * 110.06268 * 298.32593 * 17 16 14 37 37 H 1.09002 * 110.72057 * 219.57186 * 18 17 16 38 38 H 1.09003 * 110.71837 * 96.47759 * 18 17 16 39 39 H 1.09004 * 109.46811 * 295.00036 * 21 19 18 40 40 H 1.08999 * 109.46975 * 54.99711 * 21 19 18 41 41 H 1.07998 * 120.02784 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.97437 * 180.22889 * 25 24 23 43 43 H 1.07998 * 119.94181 * 179.74653 * 26 25 24 44 44 H 1.07996 * 119.97417 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.02678 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.37285 * 85.24728 * 29 16 14 47 47 H 1.09000 * 110.45726 * 322.97239 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1955 -5.9765 0.0007 14 6 1.7462 -7.2472 -0.0002 15 8 0.5509 -7.4693 -0.0011 16 7 2.6220 -8.2716 0.0000 17 6 4.0898 -8.1455 -0.0037 18 6 4.6687 -9.5757 0.0265 19 6 3.5020 -10.4152 0.6108 20 1 3.4861 -10.3576 1.6992 21 6 3.5840 -11.8693 0.1420 22 8 2.5667 -12.6365 0.7888 23 6 2.5014 -13.9586 0.4812 24 6 3.3944 -14.5050 -0.4291 25 6 3.3294 -15.8503 -0.7363 26 6 2.3685 -16.6499 -0.1453 27 6 1.4737 -16.1065 0.7580 28 6 1.5381 -14.7629 1.0726 29 6 2.2697 -9.7032 -0.0014 30 1 -0.4849 0.8400 0.0004 31 1 0.3533 -2.3906 -0.0002 32 1 0.6173 -4.9205 -0.8903 33 1 0.6165 -4.9208 0.8897 34 1 3.1492 -5.7994 0.0011 35 1 4.4161 -7.5948 0.8785 36 1 4.4187 -7.6314 -0.9068 37 1 5.5423 -9.6246 0.6766 38 1 4.9193 -9.9116 -0.9797 39 1 3.4397 -11.9116 -0.9376 40 1 4.5627 -12.2776 0.3941 41 1 4.1426 -13.8800 -0.8939 42 1 4.0267 -16.2769 -1.4421 43 1 2.3167 -17.7005 -0.3899 44 1 0.7239 -16.7329 1.2179 45 1 0.8392 -14.3390 1.7785 46 1 2.0979 -10.0506 -1.0201 47 1 1.3863 -9.8787 0.6125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358318831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:22 Heat of formation + Delta-G solvation = -97.349765 kcal Electronic energy + Delta-G solvation = -28734.969445 eV Core-core repulsion = 24496.068168 eV Total energy + Delta-G solvation = -4238.901277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55071 -40.99518 -40.17259 -38.98315 -37.96969 -36.26011 -35.34699 -33.62105 -33.32129 -31.89866 -30.96687 -30.13976 -29.36311 -27.21504 -26.11912 -24.27797 -23.51856 -22.79444 -21.49050 -21.30672 -21.08616 -20.11734 -19.41869 -19.03788 -17.85192 -17.50361 -17.10087 -16.94805 -16.77663 -16.66216 -16.52852 -16.12549 -15.92998 -15.42400 -15.33090 -15.16391 -14.60974 -14.45495 -14.29155 -14.17225 -14.04408 -13.84188 -13.54187 -13.53071 -13.39607 -13.00867 -12.90167 -12.56130 -12.45692 -12.32143 -12.28316 -12.12335 -11.89489 -11.61872 -11.57676 -11.57233 -11.46118 -10.57055 -10.36167 -10.10132 -9.92091 -9.59385 -9.13624 -8.51028 -6.01517 0.42475 0.52662 1.36508 1.40002 1.45432 1.56841 1.87971 2.02662 2.18782 2.28223 2.85834 2.88236 3.15934 3.16144 3.45877 3.50129 3.80047 3.93818 4.01990 4.17685 4.20084 4.24750 4.25676 4.33010 4.39659 4.40270 4.42752 4.53597 4.56328 4.59075 4.66720 4.74473 4.82570 4.88757 5.01592 5.11827 5.19246 5.26649 5.28155 5.38374 5.39360 5.51502 5.63977 5.89815 5.91488 5.94368 6.47204 6.49731 6.85694 7.02856 7.38387 7.46277 7.93128 8.65886 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.037928 B = 0.001469 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.055170 B =19059.289027 C =19605.623459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.721 5.721 14 C 0.718 3.282 15 O -0.633 6.633 16 N -0.638 5.638 17 C 0.088 3.912 18 C -0.105 4.105 19 C -0.090 4.090 20 H 0.093 0.907 21 C 0.072 3.928 22 O -0.334 6.334 23 C 0.112 3.888 24 C -0.217 4.217 25 C -0.087 4.087 26 C -0.167 4.167 27 C -0.087 4.087 28 C -0.177 4.177 29 C 0.129 3.871 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.410 0.590 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.127 0.873 46 H 0.070 0.930 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.368 -31.537 -0.818 32.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.193 5.193 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.012 3.988 13 N -0.379 5.379 14 C 0.419 3.581 15 O -0.515 6.515 16 N -0.376 5.376 17 C -0.034 4.034 18 C -0.142 4.142 19 C -0.109 4.109 20 H 0.112 0.888 21 C -0.003 4.003 22 O -0.249 6.249 23 C 0.067 3.933 24 C -0.236 4.236 25 C -0.105 4.105 26 C -0.186 4.186 27 C -0.105 4.105 28 C -0.195 4.195 29 C 0.006 3.994 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.248 0.752 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.088 0.912 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.988 -31.306 -0.686 32.578 hybrid contribution -0.132 1.245 -0.028 1.252 sum 8.856 -30.061 -0.713 31.347 Atomic orbital electron populations 1.69687 1.07060 1.29650 1.49187 1.26141 0.96523 1.02702 0.95700 0.84851 0.77911 0.76392 0.78719 1.19526 1.19693 1.19376 1.19760 0.93018 0.83481 1.50489 0.89450 1.41827 1.09592 1.04561 1.63341 1.20330 0.88101 0.85784 0.83664 1.90458 1.15061 1.87513 1.58056 1.20603 0.91019 0.83170 1.03992 1.44679 1.11055 1.03034 1.79112 1.15491 0.84247 0.80363 0.77973 1.90876 1.15481 1.84478 1.60676 1.47620 1.07004 1.05326 1.77615 1.22367 0.78173 1.00121 1.02722 1.22615 0.97118 0.90449 1.04031 1.22298 0.94740 0.92133 1.01759 0.88827 1.22865 0.91090 0.88910 0.97432 1.86063 1.54757 1.18059 1.65984 1.19266 0.95707 0.83149 0.95201 1.21537 1.02295 0.97687 1.02044 1.21332 0.97934 0.92793 0.98443 1.21428 0.96782 1.01333 0.99008 1.21278 0.98768 0.93690 0.96733 1.20717 1.00381 0.94307 1.04144 1.22192 0.98499 0.77786 1.00875 0.91066 0.76716 0.89095 0.89178 0.75210 0.91000 0.90523 0.86730 0.88006 0.90411 0.88923 0.83713 0.83556 0.83853 0.83596 0.85549 0.91217 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.90 13.05 21.66 0.28 -48.61 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 8 H 0.09 5.06 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.34 5.29 -306.98 -1.62 -29.97 16 10 C 0.43 20.41 7.85 87.66 0.69 21.10 16 11 O -0.62 -32.34 15.24 -3.06 -0.05 -32.38 16 12 C 0.14 5.44 6.15 85.64 0.53 5.96 16 13 N -0.72 -25.64 5.49 -482.31 -2.65 -28.29 16 14 C 0.72 25.33 8.49 179.05 1.52 26.85 16 15 O -0.63 -26.95 16.60 -3.97 -0.07 -27.01 16 16 N -0.64 -16.74 3.33 -828.96 -2.76 -19.50 16 17 C 0.09 1.57 6.17 86.67 0.53 2.10 16 18 C -0.10 -1.00 6.41 31.78 0.20 -0.80 16 19 C -0.09 -1.24 3.30 -9.40 -0.03 -1.27 16 20 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 21 C 0.07 0.82 4.19 71.98 0.30 1.12 16 22 O -0.33 -6.11 10.10 -92.44 -0.93 -7.05 16 23 C 0.11 1.95 6.69 22.51 0.15 2.10 16 24 C -0.22 -2.87 9.04 22.37 0.20 -2.67 16 25 C -0.09 -0.97 10.04 22.26 0.22 -0.75 16 26 C -0.17 -1.88 10.04 22.28 0.22 -1.66 16 27 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 28 C -0.18 -3.00 9.99 22.37 0.22 -2.78 16 29 C 0.13 2.85 6.34 86.86 0.55 3.41 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 32 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 34 H 0.41 14.07 6.42 -92.71 -0.60 13.48 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.62 8.04 -2.39 -0.02 0.60 16 39 H 0.08 0.74 7.47 -2.39 -0.02 0.72 16 40 H 0.09 0.65 7.67 -2.39 -0.02 0.63 16 41 H 0.15 1.26 6.30 -2.91 -0.02 1.24 16 42 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 46 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 47 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -73.77 396.20 0.73 -73.04 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.32 Total: 42.14 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 6.82 Total: 33.89 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -6.75 Total: -126.37 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -1.05 Total: -66.45 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -73.77 0.73 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358318831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds