Wall clock time and date at job start Wed Apr 1 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47016 * 203.40199 * 3 2 1 5 5 N 1.46503 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00138 * 269.99842 * 5 4 3 7 7 C 1.50701 * 109.47240 * 270.00007 * 6 5 4 8 8 H 1.08001 * 119.99835 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99854 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99791 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00436 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47345 * 89.99260 * 11 9 7 13 13 H 1.48502 * 109.47554 * 209.99740 * 11 9 7 14 14 H 1.48506 * 109.47083 * 329.99732 * 11 9 7 15 15 C 1.34777 * 119.99704 * 89.99952 * 5 4 3 16 16 O 1.21281 * 120.00157 * 179.97438 * 15 5 4 17 17 C 1.50703 * 120.00079 * 359.97438 * 15 5 4 18 18 N 1.46902 * 109.46974 * 173.89924 * 17 15 5 19 19 C 1.47006 * 111.00513 * 293.69937 * 18 17 15 20 20 C 1.53096 * 109.25879 * 177.60700 * 19 18 17 21 21 O 1.43020 * 109.29496 * 56.82703 * 20 19 18 22 22 C 1.43013 * 113.73356 * 301.39868 * 21 20 19 23 23 C 1.47014 * 110.99763 * 170.05725 * 18 17 15 24 24 H 1.09001 * 109.50672 * 62.46613 * 23 18 17 25 25 C 1.50695 * 109.51270 * 302.37884 * 23 18 17 26 26 C 1.34510 * 125.79605 * 139.99840 * 25 23 18 27 27 C 1.41377 * 106.84416 * 180.02562 * 26 25 23 28 28 C 1.34512 * 106.84507 * 359.97438 * 27 26 25 29 29 O 1.34309 * 125.78519 * 319.68955 * 25 23 18 30 30 H 1.08999 * 109.47501 * 83.40410 * 3 2 1 31 31 H 1.08999 * 109.47022 * 323.39672 * 3 2 1 32 32 H 1.08999 * 109.46813 * 59.99791 * 4 3 2 33 33 H 1.08999 * 109.46795 * 299.99612 * 4 3 2 34 34 H 1.08998 * 109.47142 * 30.00093 * 6 5 4 35 35 H 1.09003 * 109.46940 * 150.00301 * 6 5 4 36 36 H 0.97001 * 119.99765 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46952 * 53.90581 * 17 15 5 38 38 H 1.08998 * 109.47191 * 293.90577 * 17 15 5 39 39 H 1.09000 * 109.50764 * 57.67137 * 19 18 17 40 40 H 1.09002 * 109.50784 * 297.54189 * 19 18 17 41 41 H 1.09004 * 109.51024 * 176.78068 * 20 19 18 42 42 H 1.09002 * 109.50725 * 296.86834 * 20 19 18 43 43 H 1.09002 * 109.47726 * 298.66534 * 22 21 20 44 44 H 1.08997 * 109.50701 * 178.56013 * 22 21 20 45 45 H 1.08002 * 126.57587 * 359.95939 * 26 25 23 46 46 H 1.08005 * 126.57847 * 179.97438 * 27 26 25 47 47 H 1.07993 * 125.79661 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3248 0.5730 5 7 4.5824 1.3252 0.5735 6 6 5.3146 0.8217 1.7382 7 6 5.5651 1.9531 2.7017 8 1 5.2137 2.9476 2.4698 9 6 6.2421 1.7183 3.8796 10 7 6.4611 2.7058 4.7202 11 14 6.8494 -0.0020 4.2810 12 1 8.2232 -0.1795 3.7457 13 1 6.8638 -0.1908 5.7539 14 1 5.9440 -1.0035 3.6624 15 6 5.2565 1.7888 -0.4975 16 8 6.4694 1.7896 -0.4969 17 6 4.5033 2.3062 -1.6959 18 7 5.4513 2.8835 -2.6582 19 6 6.0929 4.0866 -2.1089 20 6 7.1136 4.6199 -3.1177 21 8 6.4580 4.8764 -4.3626 22 6 5.8219 3.7261 -4.9260 23 6 4.7881 3.1837 -3.9355 24 1 4.0108 3.9309 -3.7752 25 6 4.1703 1.9259 -4.4898 26 6 2.9738 1.8391 -5.0981 27 6 2.7932 0.4831 -5.4552 28 6 3.8904 -0.1776 -5.0442 29 8 4.7238 0.7024 -4.4653 30 1 2.9715 -0.1172 -1.0208 31 1 2.9717 -0.8242 0.6128 32 1 2.7540 1.4427 1.5938 33 1 2.7537 2.1496 -0.0398 34 1 4.7256 0.0484 2.2312 35 1 6.2673 0.4022 1.4149 36 1 6.9377 2.5406 5.5487 37 1 3.7967 3.0727 -1.3776 38 1 3.9618 1.4858 -2.1666 39 1 6.5993 3.8358 -1.1768 40 1 5.3365 4.8482 -1.9193 41 1 7.5508 5.5440 -2.7394 42 1 7.8997 3.8795 -3.2661 43 1 6.5700 2.9593 -5.1275 44 1 5.3249 4.0036 -5.8554 45 1 2.2831 2.6496 -5.2782 46 1 1.9383 0.0591 -5.9609 47 1 4.0726 -1.2354 -5.1637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369232097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:11 Heat of formation + Delta-G solvation = -33.598325 kcal Electronic energy + Delta-G solvation = -31668.584233 eV Core-core repulsion = 27432.447426 eV Total energy + Delta-G solvation = -4236.136807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.50243 -41.23382 -40.11642 -38.03206 -36.95277 -36.49092 -34.79843 -34.01181 -33.07147 -32.37081 -31.03472 -29.68381 -28.96218 -26.27527 -25.27588 -25.16188 -23.81564 -22.71862 -22.01254 -20.89774 -19.96839 -19.17256 -18.62935 -18.48913 -17.96359 -17.51991 -17.32903 -16.86911 -16.56523 -16.50953 -16.16495 -15.98557 -15.75279 -15.56990 -15.42314 -14.90175 -14.75674 -14.47006 -14.39334 -14.13081 -13.74352 -13.62236 -13.60246 -13.53819 -13.41162 -13.29317 -13.05511 -12.99603 -12.69838 -12.55795 -12.38646 -12.27119 -11.97750 -11.89534 -11.68787 -11.66410 -11.01329 -10.76701 -10.75712 -10.50931 -9.48497 -9.43928 -9.34018 -8.27261 -6.31582 0.82059 1.38925 1.43123 1.49961 1.64924 1.74061 1.81951 1.82558 2.06732 2.18709 2.36883 2.68575 2.83682 3.06846 3.12535 3.63820 3.66945 3.78365 3.91393 4.03140 4.04302 4.07302 4.12370 4.21817 4.23306 4.30225 4.33948 4.39378 4.55256 4.68403 4.71116 4.77102 4.83722 4.87273 4.91371 4.98029 4.99197 5.06501 5.07533 5.22980 5.52786 5.58554 5.64081 5.71326 5.82506 6.07135 6.29993 6.34827 6.57778 6.67666 6.71486 7.28739 7.46406 8.89485 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.003994 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.189470 B = 7009.659386 C = 8958.234735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.244 3.756 3 C -0.037 4.037 4 C 0.112 3.888 5 N -0.595 5.595 6 C 0.224 3.776 7 C -0.530 4.530 8 H 0.030 0.970 9 C 0.011 3.989 10 N -0.948 5.948 11 Si 0.942 3.058 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.228 1.228 15 C 0.508 3.492 16 O -0.562 6.562 17 C 0.049 3.951 18 N -0.526 5.526 19 C 0.019 3.981 20 C 0.069 3.931 21 O -0.388 6.388 22 C 0.073 3.927 23 C 0.133 3.867 24 H 0.092 0.908 25 C -0.022 4.022 26 C -0.199 4.199 27 C -0.223 4.223 28 C -0.041 4.041 29 O -0.180 6.180 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.126 0.874 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 -4.371 -22.171 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.074 4.074 3 C -0.078 4.078 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.102 3.898 7 C -0.569 4.569 8 H 0.048 0.952 9 C -0.186 4.186 10 N -0.589 5.589 11 Si 0.765 3.235 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.151 1.151 15 C 0.296 3.704 16 O -0.439 6.439 17 C -0.082 4.082 18 N -0.251 5.251 19 C -0.109 4.109 20 C -0.007 4.007 21 O -0.307 6.307 22 C -0.004 4.004 23 C 0.025 3.975 24 H 0.109 0.891 25 C -0.073 4.073 26 C -0.219 4.219 27 C -0.242 4.242 28 C -0.108 4.108 29 O -0.076 6.076 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.134 0.866 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.144 0.856 45 H 0.180 0.820 46 H 0.184 0.816 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.683 -4.550 -22.052 23.791 hybrid contribution 0.208 0.027 1.199 1.217 sum -7.475 -4.523 -20.853 22.609 Atomic orbital electron populations 1.81259 1.14347 1.09982 1.10756 1.29114 0.94933 0.91844 0.91480 1.19817 0.80216 1.01236 1.06494 1.21529 0.79078 0.96834 1.03862 1.47837 1.06617 1.62384 1.15839 1.19394 0.93056 0.94088 0.83234 1.21582 1.36269 0.95769 1.03293 0.95161 1.25804 0.95517 1.01414 0.95915 1.70058 1.43009 1.34227 1.11599 0.85808 0.79748 0.80397 0.77572 1.20485 1.20974 1.15088 1.20846 0.87890 0.77632 0.84017 1.90652 1.15836 1.55562 1.81889 1.22035 0.93616 1.01286 0.91244 1.61810 1.31094 1.29227 1.03010 1.22849 0.98247 0.90215 0.99604 1.22676 0.93542 1.01806 0.82713 1.87984 1.71323 1.34193 1.37168 1.22796 0.94047 0.88086 0.95504 1.20916 0.96504 0.90433 0.89660 0.89053 1.21960 0.94631 0.85037 1.05651 1.21858 0.97114 0.98838 1.04087 1.22096 1.01339 0.93589 1.07161 1.24782 0.90135 0.96559 0.99358 1.84156 1.43933 1.17049 1.62463 0.85315 0.85124 0.89388 0.88556 0.92299 0.95754 0.92556 0.90400 0.86229 0.90536 0.93341 0.86610 0.92709 0.92718 0.85620 0.81978 0.81647 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.90 18.54 20.01 0.37 -12.53 16 2 C 0.24 4.99 15.43 89.44 1.38 6.38 16 3 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 4 C 0.11 2.63 5.19 86.38 0.45 3.08 16 5 N -0.60 -20.17 2.46 -826.14 -2.03 -22.20 16 6 C 0.22 9.55 4.23 85.63 0.36 9.91 16 7 C -0.53 -28.85 9.94 25.60 0.25 -28.60 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.01 0.63 5.47 84.65 0.46 1.09 16 10 N -0.95 -58.14 13.96 21.45 0.30 -57.84 16 11 Si 0.94 41.95 27.47 68.60 1.88 43.84 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.23 -8.73 6.54 99.48 0.65 -8.07 16 15 C 0.51 17.92 7.25 87.66 0.64 18.55 16 16 O -0.56 -25.37 14.24 -3.03 -0.04 -25.41 16 17 C 0.05 1.24 4.00 85.56 0.34 1.58 16 18 N -0.53 -13.94 4.22 -878.95 -3.71 -17.65 16 19 C 0.02 0.52 5.30 86.31 0.46 0.98 16 20 C 0.07 1.70 7.01 72.01 0.50 2.21 16 21 O -0.39 -9.08 10.83 -148.98 -1.61 -10.69 16 22 C 0.07 1.44 6.28 72.02 0.45 1.89 16 23 C 0.13 2.70 2.44 44.18 0.11 2.81 16 24 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 25 C -0.02 -0.43 4.48 24.83 0.11 -0.32 16 26 C -0.20 -3.11 10.80 22.19 0.24 -2.87 16 27 C -0.22 -3.12 10.91 22.19 0.24 -2.88 16 28 C -0.04 -0.60 12.09 66.97 0.81 0.21 16 29 O -0.18 -3.86 10.41 -2.63 -0.03 -3.88 16 30 H 0.13 1.63 7.41 -2.39 -0.02 1.62 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 2.28 8.07 -2.39 -0.02 2.27 16 33 H 0.10 1.89 6.28 -2.39 -0.01 1.87 16 34 H 0.06 2.21 7.13 -2.39 -0.02 2.19 16 35 H 0.02 1.13 6.85 -2.39 -0.02 1.11 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.08 1.73 7.05 -2.39 -0.02 1.72 16 38 H 0.12 2.55 5.77 -2.39 -0.01 2.54 16 39 H 0.08 2.76 6.09 -2.39 -0.01 2.75 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 46 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 47 H 0.23 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -78.44 391.88 3.05 -75.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.93 Total: 17.39 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.98 Total: 13.59 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.07 Total: -110.22 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.68 Total: -39.98 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Total: -78.44 3.05 -75.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369232097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.787 kcal (2) G-P(sol) polarization free energy of solvation -78.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds