Wall clock time and date at job start Wed Apr 1 2020 04:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99817 * 2 1 4 4 H 1.48501 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47132 * 300.00070 * 3 2 1 6 6 H 1.48498 * 109.47055 * 60.00188 * 3 2 1 7 7 C 1.38948 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00511 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99849 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99915 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99895 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47277 * 179.97438 * 12 10 9 14 14 C 1.39711 * 120.00267 * 179.97438 * 13 12 10 15 15 C 1.39014 * 120.00171 * 0.02562 * 14 13 12 16 16 C 1.38207 * 120.22136 * 179.97438 * 15 14 13 17 17 C 1.38033 * 120.22230 * 0.02562 * 16 15 14 18 18 C 1.39568 * 120.00566 * 359.95746 * 17 16 15 19 19 C 1.47864 * 120.10846 * 180.02562 * 18 17 16 20 20 O 1.21552 * 120.00059 * 318.88870 * 19 18 17 21 21 N 1.34775 * 120.00513 * 138.89302 * 19 18 17 22 22 C 1.46923 * 120.63433 * 174.16400 * 21 19 18 23 23 C 1.53190 * 108.77581 * 126.41308 * 22 21 19 24 24 C 1.53043 * 109.31294 * 54.63782 * 23 22 21 25 25 C 1.53047 * 109.53444 * 298.63432 * 24 23 22 26 26 H 1.09001 * 109.49757 * 301.40860 * 25 24 23 27 27 O 1.42901 * 109.52308 * 181.33623 * 25 24 23 28 28 C 1.46933 * 120.62614 * 354.18445 * 21 19 18 29 29 C 1.38645 * 120.00622 * 180.22924 * 14 13 12 30 30 H 0.96998 * 120.00541 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00366 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47209 * 59.99662 * 12 10 9 33 33 H 1.09003 * 109.46733 * 299.99873 * 12 10 9 34 34 H 0.97005 * 119.99839 * 0.02562 * 13 12 10 35 35 H 1.08000 * 119.89290 * 0.02562 * 15 14 13 36 36 H 1.07998 * 119.88983 * 179.97438 * 16 15 14 37 37 H 1.07998 * 119.99376 * 179.97438 * 17 16 15 38 38 H 1.09003 * 109.58459 * 6.62618 * 22 21 19 39 39 H 1.09000 * 109.58807 * 246.20142 * 22 21 19 40 40 H 1.09001 * 109.50026 * 174.58866 * 23 22 21 41 41 H 1.09002 * 109.49804 * 294.68329 * 23 22 21 42 42 H 1.09001 * 109.46281 * 58.65297 * 24 23 22 43 43 H 1.08997 * 109.46038 * 178.61761 * 24 23 22 44 44 H 0.96692 * 114.00059 * 180.14948 * 27 25 24 45 45 H 1.09001 * 109.58620 * 353.37916 * 28 21 19 46 46 H 1.09004 * 109.57863 * 113.79989 * 28 21 19 47 47 H 1.08007 * 120.10877 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7302 -7.2936 0.0013 15 6 0.3635 -7.5478 0.0023 16 6 -0.1021 -8.8490 0.0027 17 6 0.7868 -9.9050 0.0026 18 6 2.1609 -9.6607 0.0011 19 6 3.1151 -10.7902 0.0004 20 8 2.9022 -11.7662 0.6929 21 7 4.2211 -10.7377 -0.7681 22 6 5.2413 -11.7916 -0.6848 23 6 5.4989 -12.3407 -2.0915 24 6 5.8635 -11.1856 -3.0269 25 6 4.6963 -10.1984 -3.1000 26 1 3.8052 -10.7143 -3.4577 27 8 5.0248 -9.1360 -3.9975 28 6 4.4295 -9.6250 -1.7048 29 6 2.6311 -8.3475 0.0054 30 1 -0.4851 0.8400 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.6168 -4.9209 -0.8886 33 1 0.6176 -4.9204 0.8914 34 1 3.1496 -5.7991 0.0000 35 1 -0.3368 -6.7256 0.0020 36 1 -1.1650 -9.0403 0.0039 37 1 0.4189 -10.9204 0.0033 38 1 4.8857 -12.5942 -0.0387 39 1 6.1641 -11.3758 -0.2802 40 1 6.3214 -13.0553 -2.0582 41 1 4.6003 -12.8366 -2.4587 42 1 6.7477 -10.6748 -2.6457 43 1 6.0712 -11.5766 -4.0229 44 1 4.3293 -8.4708 -4.0908 45 1 3.5383 -8.9980 -1.7315 46 1 5.2862 -9.0325 -1.3833 47 1 3.6934 -8.1522 0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425944398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:16 Heat of formation + Delta-G solvation = -90.307627 kcal Electronic energy + Delta-G solvation = -29952.916213 eV Core-core repulsion = 25714.320306 eV Total energy + Delta-G solvation = -4238.595907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85861 -39.28354 -38.44108 -38.01103 -35.95717 -35.13721 -34.03749 -33.33225 -31.49036 -31.16803 -30.05690 -29.83151 -26.80049 -26.14611 -24.58450 -23.68017 -23.18755 -22.02355 -20.96668 -19.64542 -19.34440 -18.17659 -17.77040 -17.60153 -17.05473 -16.33980 -16.21518 -15.69251 -15.42649 -15.06996 -15.04698 -14.89476 -14.73837 -14.49291 -14.07865 -14.05354 -13.65305 -13.49909 -13.48082 -13.04073 -13.02480 -12.94061 -12.42206 -12.27929 -12.10108 -11.72726 -11.63588 -11.49427 -11.43234 -11.35214 -11.20736 -10.95322 -10.54547 -10.46564 -10.38406 -10.13278 -9.98512 -9.71244 -9.03155 -8.86043 -8.71485 -8.18006 -7.36342 -6.58962 -4.00911 0.92919 1.53041 2.54682 2.69263 3.05056 3.18040 3.24129 3.47420 3.64841 3.78236 3.81226 4.06386 4.28590 4.37398 4.47579 4.55648 4.72797 4.75715 4.82443 4.84845 5.05376 5.09051 5.11936 5.21370 5.26658 5.36600 5.41004 5.44489 5.48602 5.51304 5.52429 5.62641 5.69867 5.77908 5.81698 5.87219 6.00275 6.12282 6.20462 6.33232 6.46634 6.70613 7.05853 7.29696 7.34742 7.39573 7.84009 7.91020 7.93512 8.37367 8.97895 9.31059 9.78921 10.57942 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.002186 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.112321 B =12805.138917 C =14044.237724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.595 6.595 12 C 0.112 3.888 13 N -0.722 5.722 14 C 0.225 3.775 15 C -0.180 4.180 16 C -0.073 4.073 17 C -0.136 4.136 18 C -0.085 4.085 19 C 0.567 3.433 20 O -0.535 6.535 21 N -0.605 5.605 22 C 0.107 3.893 23 C -0.131 4.131 24 C -0.115 4.115 25 C 0.092 3.908 26 H 0.059 0.941 27 O -0.562 6.562 28 C 0.065 3.935 29 C -0.176 4.176 30 H 0.274 0.726 31 H 0.395 0.605 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.412 0.588 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.384 0.616 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -21.179 -4.992 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.213 3.787 11 O -0.481 6.481 12 C -0.017 4.017 13 N -0.352 5.352 14 C 0.118 3.882 15 C -0.203 4.203 16 C -0.092 4.092 17 C -0.157 4.157 18 C -0.089 4.089 19 C 0.356 3.644 20 O -0.412 6.412 21 N -0.339 5.339 22 C -0.015 4.015 23 C -0.169 4.169 24 C -0.152 4.152 25 C 0.032 3.968 26 H 0.077 0.923 27 O -0.367 6.367 28 C -0.058 4.058 29 C -0.199 4.199 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.251 0.749 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.232 0.768 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.129 -21.663 -4.683 22.545 hybrid contribution -0.431 1.441 0.073 1.505 sum 3.698 -20.223 -4.610 21.069 Atomic orbital electron populations 1.69606 1.06015 1.28495 1.49396 1.25321 0.95678 0.99962 0.96724 0.85761 0.79723 0.80774 0.77883 1.19114 1.20556 1.20570 1.19772 0.93490 0.81967 1.48166 0.87651 1.41810 1.09405 1.04530 1.62721 1.19704 0.88337 0.84915 0.85712 1.90511 1.13762 1.86732 1.57091 1.20972 0.92147 0.86504 1.02039 1.44547 1.09815 1.00894 1.79984 1.17712 0.92699 0.84590 0.93160 1.20914 0.93615 0.97660 1.08125 1.20838 0.99468 0.91662 0.97217 1.20809 0.91092 0.99406 1.04400 1.19437 0.93867 0.92001 1.03601 1.18522 0.80356 0.86481 0.79010 1.90764 1.74916 1.33419 1.42125 1.47881 1.20926 1.24826 1.40295 1.21679 0.91002 0.91183 0.97607 1.21889 1.02622 0.97660 0.94730 1.21506 0.97770 0.95372 1.00591 1.22112 0.97959 0.88433 0.88254 0.92255 1.86523 1.47080 1.37843 1.65249 1.22892 1.04135 0.89549 0.89266 1.20693 0.99164 0.90530 1.09526 0.91601 0.77132 0.90506 0.90545 0.74949 0.85440 0.85533 0.85871 0.88533 0.91121 0.89840 0.91193 0.90842 0.90832 0.76847 0.87779 0.90271 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.05 55.50 0.72 -22.38 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.03 9.68 -14.93 -0.14 -8.17 16 8 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -12.95 5.29 -10.96 -0.06 -13.01 16 10 C 0.43 9.24 7.85 -10.98 -0.09 9.15 16 11 O -0.59 -14.81 15.24 5.55 0.08 -14.72 16 12 C 0.11 1.77 5.39 -5.20 -0.03 1.74 16 13 N -0.72 -10.70 5.70 -59.84 -0.34 -11.04 16 14 C 0.22 2.92 6.65 -83.83 -0.56 2.37 16 15 C -0.18 -2.13 9.31 -39.30 -0.37 -2.49 16 16 C -0.07 -0.78 10.02 -39.67 -0.40 -1.18 16 17 C -0.14 -1.59 9.64 -39.16 -0.38 -1.97 16 18 C -0.09 -1.06 5.08 -105.00 -0.53 -1.59 16 19 C 0.57 7.30 7.31 -12.32 -0.09 7.21 16 20 O -0.54 -8.44 16.36 5.32 0.09 -8.36 16 21 N -0.60 -6.15 2.97 -173.87 -0.52 -6.67 16 22 C 0.11 0.91 6.44 -3.71 -0.02 0.89 16 23 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 24 C -0.11 -0.86 5.54 -26.68 -0.15 -1.00 16 25 C 0.09 0.76 3.62 -26.61 -0.10 0.67 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 O -0.56 -5.05 13.32 -35.23 -0.47 -5.52 16 28 C 0.06 0.57 4.55 -3.71 -0.02 0.55 16 29 C -0.18 -2.13 7.24 -38.97 -0.28 -2.41 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.40 8.81 7.90 -40.82 -0.32 8.49 16 32 H 0.08 1.08 7.94 -51.93 -0.41 0.66 16 33 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 34 H 0.41 6.57 7.45 -40.82 -0.30 6.27 16 35 H 0.13 1.38 6.71 -52.49 -0.35 1.03 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.10 0.92 7.00 -51.93 -0.36 0.56 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.38 2.25 9.08 45.56 0.41 2.66 16 45 H 0.10 0.94 4.80 -51.93 -0.25 0.69 16 46 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 47 H 0.13 1.43 6.70 -52.48 -0.35 1.08 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -31.88 386.80 -8.76 -40.64 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -5.67 Total: 16.91 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.41 Total: 3.28 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.19 Total: -53.10 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.30 Total: -28.60 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.88 -8.76 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425944398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.672 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds