Wall clock time and date at job start Wed Apr 1 2020 04:05:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31406 * 1
3 3 Si 1.86805 * 119.99817 * 2 1
4 4 H 1.48501 * 109.46894 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47132 * 300.00070 * 3 2 1
6 6 H 1.48498 * 109.47055 * 60.00188 * 3 2 1
7 7 C 1.38948 * 120.00274 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00511 * 179.97438 * 7 2 1
9 9 N 1.37097 * 119.99798 * 0.02562 * 7 2 1
10 10 C 1.34783 * 119.99849 * 179.97438 * 9 7 2
11 11 O 1.21291 * 119.99915 * 359.97438 * 10 9 7
12 12 C 1.50697 * 119.99895 * 179.97438 * 10 9 7
13 13 N 1.46497 * 109.47277 * 179.97438 * 12 10 9
14 14 C 1.39711 * 120.00267 * 179.97438 * 13 12 10
15 15 C 1.39014 * 120.00171 * 0.02562 * 14 13 12
16 16 C 1.38207 * 120.22136 * 179.97438 * 15 14 13
17 17 C 1.38033 * 120.22230 * 0.02562 * 16 15 14
18 18 C 1.39568 * 120.00566 * 359.95746 * 17 16 15
19 19 C 1.47864 * 120.10846 * 180.02562 * 18 17 16
20 20 O 1.21552 * 120.00059 * 318.88870 * 19 18 17
21 21 N 1.34775 * 120.00513 * 138.89302 * 19 18 17
22 22 C 1.46923 * 120.63433 * 174.16400 * 21 19 18
23 23 C 1.53190 * 108.77581 * 126.41308 * 22 21 19
24 24 C 1.53043 * 109.31294 * 54.63782 * 23 22 21
25 25 C 1.53047 * 109.53444 * 298.63432 * 24 23 22
26 26 H 1.09001 * 109.49757 * 301.40860 * 25 24 23
27 27 O 1.42901 * 109.52308 * 181.33623 * 25 24 23
28 28 C 1.46933 * 120.62614 * 354.18445 * 21 19 18
29 29 C 1.38645 * 120.00622 * 180.22924 * 14 13 12
30 30 H 0.96998 * 120.00541 * 359.97438 * 1 2 3
31 31 H 0.97001 * 120.00366 * 359.97438 * 9 7 2
32 32 H 1.09001 * 109.47209 * 59.99662 * 12 10 9
33 33 H 1.09003 * 109.46733 * 299.99873 * 12 10 9
34 34 H 0.97005 * 119.99839 * 0.02562 * 13 12 10
35 35 H 1.08000 * 119.89290 * 0.02562 * 15 14 13
36 36 H 1.07998 * 119.88983 * 179.97438 * 16 15 14
37 37 H 1.07998 * 119.99376 * 179.97438 * 17 16 15
38 38 H 1.09003 * 109.58459 * 6.62618 * 22 21 19
39 39 H 1.09000 * 109.58807 * 246.20142 * 22 21 19
40 40 H 1.09001 * 109.50026 * 174.58866 * 23 22 21
41 41 H 1.09002 * 109.49804 * 294.68329 * 23 22 21
42 42 H 1.09001 * 109.46281 * 58.65297 * 24 23 22
43 43 H 1.08997 * 109.46038 * 178.61761 * 24 23 22
44 44 H 0.96692 * 114.00059 * 180.14948 * 27 25 24
45 45 H 1.09001 * 109.58620 * 353.37916 * 28 21 19
46 46 H 1.09004 * 109.57863 * 113.79989 * 28 21 19
47 47 H 1.08007 * 120.10877 * 0.02562 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.7080 1.3464 0.0006
5 1 1.8893 2.3965 -1.2124
6 1 1.8893 2.3965 1.2125
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2033 0.0001
9 7 1.3234 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0005
11 8 3.2103 -3.5578 0.0001
12 6 1.2439 -4.8629 0.0011
13 7 2.1959 -5.9764 0.0004
14 6 1.7302 -7.2936 0.0013
15 6 0.3635 -7.5478 0.0023
16 6 -0.1021 -8.8490 0.0027
17 6 0.7868 -9.9050 0.0026
18 6 2.1609 -9.6607 0.0011
19 6 3.1151 -10.7902 0.0004
20 8 2.9022 -11.7662 0.6929
21 7 4.2211 -10.7377 -0.7681
22 6 5.2413 -11.7916 -0.6848
23 6 5.4989 -12.3407 -2.0915
24 6 5.8635 -11.1856 -3.0269
25 6 4.6963 -10.1984 -3.1000
26 1 3.8052 -10.7143 -3.4577
27 8 5.0248 -9.1360 -3.9975
28 6 4.4295 -9.6250 -1.7048
29 6 2.6311 -8.3475 0.0054
30 1 -0.4851 0.8400 0.0004
31 1 0.3534 -2.3907 0.0005
32 1 0.6168 -4.9209 -0.8886
33 1 0.6176 -4.9204 0.8914
34 1 3.1496 -5.7991 0.0000
35 1 -0.3368 -6.7256 0.0020
36 1 -1.1650 -9.0403 0.0039
37 1 0.4189 -10.9204 0.0033
38 1 4.8857 -12.5942 -0.0387
39 1 6.1641 -11.3758 -0.2802
40 1 6.3214 -13.0553 -2.0582
41 1 4.6003 -12.8366 -2.4587
42 1 6.7477 -10.6748 -2.6457
43 1 6.0712 -11.5766 -4.0229
44 1 4.3293 -8.4708 -4.0908
45 1 3.5383 -8.9980 -1.7315
46 1 5.2862 -9.0325 -1.3833
47 1 3.6934 -8.1522 0.0083
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000425944398.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:15
Heat of formation + Delta-G solvation = -113.922401 kcal
Electronic energy + Delta-G solvation = -29953.940227 eV
Core-core repulsion = 25714.320306 eV
Total energy + Delta-G solvation = -4239.619921 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.47 seconds
Orbital eigenvalues (eV)
-41.75339 -40.51932 -39.72907 -38.98857 -36.72976 -36.45004 -35.75635 -34.09874
-33.37104 -32.02776 -31.04329 -30.72693 -28.18554 -26.98904 -26.17338 -24.51098
-24.04862 -22.91265 -21.80976 -21.18128 -20.27994 -20.00900 -18.73430 -18.45668
-18.08912 -17.42673 -17.18077 -16.97810 -16.49398 -16.33311 -16.18701 -16.14913
-15.76235 -15.64036 -15.35742 -15.07606 -14.68134 -14.52193 -14.48616 -14.13232
-13.93034 -13.87598 -13.61211 -13.54104 -13.29785 -12.96742 -12.91682 -12.60263
-12.44410 -12.28278 -12.13461 -12.12714 -12.09061 -11.66751 -11.58034 -11.24330
-11.14349 -10.94831 -10.52459 -10.08426 -9.93484 -9.69253 -8.51402 -8.40788
-6.00515 -0.00866 0.59614 1.34671 1.42666 1.55537 1.61336 1.82956
1.93886 2.19708 2.40669 2.87355 3.13672 3.16507 3.18663 3.47156
3.67654 3.79684 3.91916 3.95161 4.08285 4.18346 4.19781 4.22639
4.31677 4.39566 4.45167 4.51000 4.51769 4.57374 4.64626 4.72638
4.76930 4.83541 4.93627 4.95402 5.08671 5.22182 5.27974 5.35937
5.38490 5.45873 5.56289 5.75287 5.92244 6.17810 6.30600 6.51641
6.73461 6.74926 6.96539 7.05796 7.46791 7.98833 8.65500
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.014850 B = 0.002186 C = 0.001993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1885.112321 B =12805.138917 C =14044.237724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C -0.009 4.009
3 Si 0.991 3.009
4 H -0.273 1.273
5 H -0.270 1.270
6 H -0.272 1.272
7 C -0.335 4.335
8 H 0.081 0.919
9 N -0.561 5.561
10 C 0.430 3.570
11 O -0.630 6.630
12 C 0.127 3.873
13 N -0.731 5.731
14 C 0.211 3.789
15 C -0.181 4.181
16 C -0.066 4.066
17 C -0.139 4.139
18 C -0.096 4.096
19 C 0.563 3.437
20 O -0.572 6.572
21 N -0.599 5.599
22 C 0.101 3.899
23 C -0.121 4.121
24 C -0.114 4.114
25 C 0.095 3.905
26 H 0.059 0.941
27 O -0.575 6.575
28 C 0.068 3.932
29 C -0.171 4.171
30 H 0.279 0.721
31 H 0.400 0.600
32 H 0.102 0.898
33 H 0.097 0.903
34 H 0.404 0.596
35 H 0.142 0.858
36 H 0.156 0.844
37 H 0.128 0.872
38 H 0.085 0.915
39 H 0.083 0.917
40 H 0.106 0.894
41 H 0.065 0.935
42 H 0.072 0.928
43 H 0.078 0.922
44 H 0.395 0.605
45 H 0.102 0.898
46 H 0.081 0.919
47 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.532 -21.634 -5.544 22.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.209 4.209
3 Si 0.815 3.185
4 H -0.198 1.198
5 H -0.196 1.196
6 H -0.197 1.197
7 C -0.465 4.465
8 H 0.099 0.901
9 N -0.197 5.197
10 C 0.217 3.783
11 O -0.518 6.518
12 C -0.001 4.001
13 N -0.362 5.362
14 C 0.107 3.893
15 C -0.204 4.204
16 C -0.085 4.085
17 C -0.160 4.160
18 C -0.100 4.100
19 C 0.352 3.648
20 O -0.453 6.453
21 N -0.332 5.332
22 C -0.020 4.020
23 C -0.159 4.159
24 C -0.152 4.152
25 C 0.035 3.965
26 H 0.077 0.923
27 O -0.382 6.382
28 C -0.055 4.055
29 C -0.195 4.195
30 H 0.089 0.911
31 H 0.235 0.765
32 H 0.120 0.880
33 H 0.115 0.885
34 H 0.241 0.759
35 H 0.159 0.841
36 H 0.174 0.826
37 H 0.146 0.854
38 H 0.103 0.897
39 H 0.101 0.899
40 H 0.124 0.876
41 H 0.084 0.916
42 H 0.091 0.909
43 H 0.096 0.904
44 H 0.245 0.755
45 H 0.120 0.880
46 H 0.099 0.901
47 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 3.505 -22.136 -5.260 23.021
hybrid contribution -0.218 1.477 0.227 1.510
sum 3.288 -20.659 -5.033 21.516
Atomic orbital electron populations
1.69654 1.06771 1.29482 1.49516 1.26028 0.96528 1.02413 0.95968
0.84888 0.78083 0.77155 0.78345 1.19787 1.19559 1.19699 1.19690
0.92771 0.83779 1.50224 0.90109 1.41845 1.09591 1.04549 1.63724
1.20690 0.88185 0.86288 0.83104 1.90488 1.15773 1.87659 1.57899
1.20858 0.91665 0.83416 1.04119 1.44464 1.09127 1.01270 1.81330
1.17817 0.93468 0.83749 0.94278 1.21158 0.93210 0.98637 1.07349
1.21125 1.00810 0.90742 0.95806 1.21030 0.91040 1.00137 1.03762
1.19504 0.94309 0.91855 1.04295 1.18667 0.80966 0.86186 0.78934
1.90739 1.75926 1.34726 1.43874 1.47964 1.20374 1.25303 1.39512
1.21857 0.90805 0.90586 0.98779 1.21834 1.03265 0.97662 0.93111
1.21525 0.97345 0.95322 1.00989 1.22104 0.98392 0.88421 0.87562
0.92268 1.86500 1.48061 1.38391 1.65275 1.22917 1.04045 0.89135
0.89418 1.20681 0.99335 0.90321 1.09151 0.91102 0.76524 0.88034
0.88542 0.75854 0.84066 0.82596 0.85421 0.89705 0.89912 0.87606
0.91649 0.90897 0.90356 0.75495 0.88022 0.90117 0.85299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -46.74 13.05 21.66 0.28 -46.46 16
2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16
3 Si 0.99 40.96 29.55 68.60 2.03 42.98 16
4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16
6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
7 C -0.34 -17.96 9.68 84.04 0.81 -17.14 16
8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16
9 N -0.56 -26.57 5.29 -306.98 -1.62 -28.19 16
10 C 0.43 18.53 7.85 87.66 0.69 19.22 16
11 O -0.63 -31.89 15.24 -3.06 -0.05 -31.93 16
12 C 0.13 3.82 5.39 85.63 0.46 4.28 16
13 N -0.73 -20.87 5.70 -343.24 -1.96 -22.83 16
14 C 0.21 5.19 6.65 38.17 0.25 5.44 16
15 C -0.18 -3.81 9.31 22.45 0.21 -3.60 16
16 C -0.07 -1.24 10.02 22.21 0.22 -1.02 16
17 C -0.14 -3.03 9.64 22.54 0.22 -2.81 16
18 C -0.10 -2.30 5.08 -20.11 -0.10 -2.41 16
19 C 0.56 14.41 7.31 86.79 0.63 15.04 16
20 O -0.57 -18.25 16.36 -3.88 -0.06 -18.32 16
21 N -0.60 -11.91 2.97 -822.29 -2.44 -14.35 16
22 C 0.10 1.64 6.44 86.36 0.56 2.20 16
23 C -0.12 -1.44 6.08 30.67 0.19 -1.26 16
24 C -0.11 -1.54 5.54 30.62 0.17 -1.37 16
25 C 0.10 1.47 3.62 30.67 0.11 1.59 16
26 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16
27 O -0.58 -9.74 13.32 -148.98 -1.99 -11.73 16
28 C 0.07 1.15 4.55 86.36 0.39 1.54 16
29 C -0.17 -4.03 7.24 22.67 0.16 -3.87 16
30 H 0.28 13.37 8.31 -92.71 -0.77 12.59 16
31 H 0.40 17.78 7.90 -92.71 -0.73 17.04 16
32 H 0.10 2.58 7.94 -2.39 -0.02 2.56 16
33 H 0.10 2.55 7.95 -2.39 -0.02 2.53 16
34 H 0.40 12.85 7.45 -92.70 -0.69 12.16 16
35 H 0.14 2.57 6.71 -2.91 -0.02 2.55 16
36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16
37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16
38 H 0.08 1.61 7.00 -2.39 -0.02 1.60 16
39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16
41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
44 H 0.40 4.29 9.08 -74.06 -0.67 3.62 16
45 H 0.10 1.78 4.80 -2.39 -0.01 1.77 16
46 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16
47 H 0.13 2.89 6.70 -2.91 -0.02 2.87 16
Total: -1.00 -68.89 386.80 -1.42 -70.31
By element:
Atomic # 1 Polarization: 45.72 SS G_CDS: -1.05 Total: 44.67 kcal
Atomic # 6 Polarization: 10.41 SS G_CDS: 5.44 Total: 15.86 kcal
Atomic # 7 Polarization: -106.10 SS G_CDS: -5.74 Total: -111.84 kcal
Atomic # 8 Polarization: -59.88 SS G_CDS: -2.10 Total: -61.98 kcal
Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal
Total: -68.89 -1.42 -70.31 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000425944398.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.615 kcal
(2) G-P(sol) polarization free energy of solvation -68.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.503 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.48 seconds