Wall clock time and date at job start Wed Apr 1 2020 04:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99817 * 2 1 4 4 H 1.48501 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47132 * 300.00070 * 3 2 1 6 6 H 1.48498 * 109.47055 * 60.00188 * 3 2 1 7 7 C 1.38948 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00511 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99849 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99915 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99895 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47277 * 179.97438 * 12 10 9 14 14 C 1.39711 * 120.00267 * 179.97438 * 13 12 10 15 15 C 1.39014 * 120.00171 * 0.02562 * 14 13 12 16 16 C 1.38207 * 120.22136 * 179.97438 * 15 14 13 17 17 C 1.38033 * 120.22230 * 0.02562 * 16 15 14 18 18 C 1.39568 * 120.00566 * 359.95746 * 17 16 15 19 19 C 1.47864 * 120.10846 * 180.02562 * 18 17 16 20 20 O 1.21552 * 120.00059 * 318.88870 * 19 18 17 21 21 N 1.34775 * 120.00513 * 138.89302 * 19 18 17 22 22 C 1.46923 * 120.63433 * 174.16400 * 21 19 18 23 23 C 1.53190 * 108.77581 * 126.41308 * 22 21 19 24 24 C 1.53043 * 109.31294 * 54.63782 * 23 22 21 25 25 C 1.53047 * 109.53444 * 298.63432 * 24 23 22 26 26 H 1.09001 * 109.49757 * 301.40860 * 25 24 23 27 27 O 1.42901 * 109.52308 * 181.33623 * 25 24 23 28 28 C 1.46933 * 120.62614 * 354.18445 * 21 19 18 29 29 C 1.38645 * 120.00622 * 180.22924 * 14 13 12 30 30 H 0.96998 * 120.00541 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00366 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47209 * 59.99662 * 12 10 9 33 33 H 1.09003 * 109.46733 * 299.99873 * 12 10 9 34 34 H 0.97005 * 119.99839 * 0.02562 * 13 12 10 35 35 H 1.08000 * 119.89290 * 0.02562 * 15 14 13 36 36 H 1.07998 * 119.88983 * 179.97438 * 16 15 14 37 37 H 1.07998 * 119.99376 * 179.97438 * 17 16 15 38 38 H 1.09003 * 109.58459 * 6.62618 * 22 21 19 39 39 H 1.09000 * 109.58807 * 246.20142 * 22 21 19 40 40 H 1.09001 * 109.50026 * 174.58866 * 23 22 21 41 41 H 1.09002 * 109.49804 * 294.68329 * 23 22 21 42 42 H 1.09001 * 109.46281 * 58.65297 * 24 23 22 43 43 H 1.08997 * 109.46038 * 178.61761 * 24 23 22 44 44 H 0.96692 * 114.00059 * 180.14948 * 27 25 24 45 45 H 1.09001 * 109.58620 * 353.37916 * 28 21 19 46 46 H 1.09004 * 109.57863 * 113.79989 * 28 21 19 47 47 H 1.08007 * 120.10877 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7302 -7.2936 0.0013 15 6 0.3635 -7.5478 0.0023 16 6 -0.1021 -8.8490 0.0027 17 6 0.7868 -9.9050 0.0026 18 6 2.1609 -9.6607 0.0011 19 6 3.1151 -10.7902 0.0004 20 8 2.9022 -11.7662 0.6929 21 7 4.2211 -10.7377 -0.7681 22 6 5.2413 -11.7916 -0.6848 23 6 5.4989 -12.3407 -2.0915 24 6 5.8635 -11.1856 -3.0269 25 6 4.6963 -10.1984 -3.1000 26 1 3.8052 -10.7143 -3.4577 27 8 5.0248 -9.1360 -3.9975 28 6 4.4295 -9.6250 -1.7048 29 6 2.6311 -8.3475 0.0054 30 1 -0.4851 0.8400 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.6168 -4.9209 -0.8886 33 1 0.6176 -4.9204 0.8914 34 1 3.1496 -5.7991 0.0000 35 1 -0.3368 -6.7256 0.0020 36 1 -1.1650 -9.0403 0.0039 37 1 0.4189 -10.9204 0.0033 38 1 4.8857 -12.5942 -0.0387 39 1 6.1641 -11.3758 -0.2802 40 1 6.3214 -13.0553 -2.0582 41 1 4.6003 -12.8366 -2.4587 42 1 6.7477 -10.6748 -2.6457 43 1 6.0712 -11.5766 -4.0229 44 1 4.3293 -8.4708 -4.0908 45 1 3.5383 -8.9980 -1.7315 46 1 5.2862 -9.0325 -1.3833 47 1 3.6934 -8.1522 0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425944398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:15 Heat of formation + Delta-G solvation = -113.922401 kcal Electronic energy + Delta-G solvation = -29953.940227 eV Core-core repulsion = 25714.320306 eV Total energy + Delta-G solvation = -4239.619921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.75339 -40.51932 -39.72907 -38.98857 -36.72976 -36.45004 -35.75635 -34.09874 -33.37104 -32.02776 -31.04329 -30.72693 -28.18554 -26.98904 -26.17338 -24.51098 -24.04862 -22.91265 -21.80976 -21.18128 -20.27994 -20.00900 -18.73430 -18.45668 -18.08912 -17.42673 -17.18077 -16.97810 -16.49398 -16.33311 -16.18701 -16.14913 -15.76235 -15.64036 -15.35742 -15.07606 -14.68134 -14.52193 -14.48616 -14.13232 -13.93034 -13.87598 -13.61211 -13.54104 -13.29785 -12.96742 -12.91682 -12.60263 -12.44410 -12.28278 -12.13461 -12.12714 -12.09061 -11.66751 -11.58034 -11.24330 -11.14349 -10.94831 -10.52459 -10.08426 -9.93484 -9.69253 -8.51402 -8.40788 -6.00515 -0.00866 0.59614 1.34671 1.42666 1.55537 1.61336 1.82956 1.93886 2.19708 2.40669 2.87355 3.13672 3.16507 3.18663 3.47156 3.67654 3.79684 3.91916 3.95161 4.08285 4.18346 4.19781 4.22639 4.31677 4.39566 4.45167 4.51000 4.51769 4.57374 4.64626 4.72638 4.76930 4.83541 4.93627 4.95402 5.08671 5.22182 5.27974 5.35937 5.38490 5.45873 5.56289 5.75287 5.92244 6.17810 6.30600 6.51641 6.73461 6.74926 6.96539 7.05796 7.46791 7.98833 8.65500 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.002186 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.112321 B =12805.138917 C =14044.237724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.561 5.561 10 C 0.430 3.570 11 O -0.630 6.630 12 C 0.127 3.873 13 N -0.731 5.731 14 C 0.211 3.789 15 C -0.181 4.181 16 C -0.066 4.066 17 C -0.139 4.139 18 C -0.096 4.096 19 C 0.563 3.437 20 O -0.572 6.572 21 N -0.599 5.599 22 C 0.101 3.899 23 C -0.121 4.121 24 C -0.114 4.114 25 C 0.095 3.905 26 H 0.059 0.941 27 O -0.575 6.575 28 C 0.068 3.932 29 C -0.171 4.171 30 H 0.279 0.721 31 H 0.400 0.600 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.404 0.596 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.395 0.605 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -21.634 -5.544 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.099 0.901 9 N -0.197 5.197 10 C 0.217 3.783 11 O -0.518 6.518 12 C -0.001 4.001 13 N -0.362 5.362 14 C 0.107 3.893 15 C -0.204 4.204 16 C -0.085 4.085 17 C -0.160 4.160 18 C -0.100 4.100 19 C 0.352 3.648 20 O -0.453 6.453 21 N -0.332 5.332 22 C -0.020 4.020 23 C -0.159 4.159 24 C -0.152 4.152 25 C 0.035 3.965 26 H 0.077 0.923 27 O -0.382 6.382 28 C -0.055 4.055 29 C -0.195 4.195 30 H 0.089 0.911 31 H 0.235 0.765 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.241 0.759 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.245 0.755 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.505 -22.136 -5.260 23.021 hybrid contribution -0.218 1.477 0.227 1.510 sum 3.288 -20.659 -5.033 21.516 Atomic orbital electron populations 1.69654 1.06771 1.29482 1.49516 1.26028 0.96528 1.02413 0.95968 0.84888 0.78083 0.77155 0.78345 1.19787 1.19559 1.19699 1.19690 0.92771 0.83779 1.50224 0.90109 1.41845 1.09591 1.04549 1.63724 1.20690 0.88185 0.86288 0.83104 1.90488 1.15773 1.87659 1.57899 1.20858 0.91665 0.83416 1.04119 1.44464 1.09127 1.01270 1.81330 1.17817 0.93468 0.83749 0.94278 1.21158 0.93210 0.98637 1.07349 1.21125 1.00810 0.90742 0.95806 1.21030 0.91040 1.00137 1.03762 1.19504 0.94309 0.91855 1.04295 1.18667 0.80966 0.86186 0.78934 1.90739 1.75926 1.34726 1.43874 1.47964 1.20374 1.25303 1.39512 1.21857 0.90805 0.90586 0.98779 1.21834 1.03265 0.97662 0.93111 1.21525 0.97345 0.95322 1.00989 1.22104 0.98392 0.88421 0.87562 0.92268 1.86500 1.48061 1.38391 1.65275 1.22917 1.04045 0.89135 0.89418 1.20681 0.99335 0.90321 1.09151 0.91102 0.76524 0.88034 0.88542 0.75854 0.84066 0.82596 0.85421 0.89705 0.89912 0.87606 0.91649 0.90897 0.90356 0.75495 0.88022 0.90117 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.74 13.05 21.66 0.28 -46.46 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 3 Si 0.99 40.96 29.55 68.60 2.03 42.98 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.34 -17.96 9.68 84.04 0.81 -17.14 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.56 -26.57 5.29 -306.98 -1.62 -28.19 16 10 C 0.43 18.53 7.85 87.66 0.69 19.22 16 11 O -0.63 -31.89 15.24 -3.06 -0.05 -31.93 16 12 C 0.13 3.82 5.39 85.63 0.46 4.28 16 13 N -0.73 -20.87 5.70 -343.24 -1.96 -22.83 16 14 C 0.21 5.19 6.65 38.17 0.25 5.44 16 15 C -0.18 -3.81 9.31 22.45 0.21 -3.60 16 16 C -0.07 -1.24 10.02 22.21 0.22 -1.02 16 17 C -0.14 -3.03 9.64 22.54 0.22 -2.81 16 18 C -0.10 -2.30 5.08 -20.11 -0.10 -2.41 16 19 C 0.56 14.41 7.31 86.79 0.63 15.04 16 20 O -0.57 -18.25 16.36 -3.88 -0.06 -18.32 16 21 N -0.60 -11.91 2.97 -822.29 -2.44 -14.35 16 22 C 0.10 1.64 6.44 86.36 0.56 2.20 16 23 C -0.12 -1.44 6.08 30.67 0.19 -1.26 16 24 C -0.11 -1.54 5.54 30.62 0.17 -1.37 16 25 C 0.10 1.47 3.62 30.67 0.11 1.59 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 27 O -0.58 -9.74 13.32 -148.98 -1.99 -11.73 16 28 C 0.07 1.15 4.55 86.36 0.39 1.54 16 29 C -0.17 -4.03 7.24 22.67 0.16 -3.87 16 30 H 0.28 13.37 8.31 -92.71 -0.77 12.59 16 31 H 0.40 17.78 7.90 -92.71 -0.73 17.04 16 32 H 0.10 2.58 7.94 -2.39 -0.02 2.56 16 33 H 0.10 2.55 7.95 -2.39 -0.02 2.53 16 34 H 0.40 12.85 7.45 -92.70 -0.69 12.16 16 35 H 0.14 2.57 6.71 -2.91 -0.02 2.55 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.08 1.61 7.00 -2.39 -0.02 1.60 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.40 4.29 9.08 -74.06 -0.67 3.62 16 45 H 0.10 1.78 4.80 -2.39 -0.01 1.77 16 46 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 47 H 0.13 2.89 6.70 -2.91 -0.02 2.87 16 Total: -1.00 -68.89 386.80 -1.42 -70.31 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -1.05 Total: 44.67 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 5.44 Total: 15.86 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -5.74 Total: -111.84 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -2.10 Total: -61.98 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -68.89 -1.42 -70.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425944398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.615 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds