Wall clock time and date at job start Wed Apr 1 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00162 * 2 1 4 4 H 1.48496 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47228 * 300.00561 * 3 2 1 6 6 H 1.48503 * 109.47075 * 60.00226 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99559 * 172.03596 * 7 2 1 9 9 C 1.50694 * 119.99961 * 352.04027 * 7 2 1 10 10 C 1.53003 * 115.55139 * 89.33420 * 9 7 2 11 11 S 1.81404 * 109.47289 * 40.12661 * 10 9 7 12 12 O 1.42098 * 110.54189 * 283.93179 * 11 10 9 13 13 O 1.42101 * 110.54123 * 60.68272 * 11 10 9 14 14 N 1.65596 * 104.45011 * 172.30579 * 11 10 9 15 15 C 1.46506 * 119.99925 * 64.99974 * 14 11 10 16 16 C 1.52997 * 109.47289 * 164.99625 * 15 14 11 17 17 C 1.52995 * 109.47110 * 180.02562 * 16 15 14 18 18 O 1.42905 * 109.46906 * 180.02562 * 17 16 15 19 19 C 1.42900 * 114.00051 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.48247 * 310.03002 * 19 18 17 21 21 C 1.53083 * 109.48352 * 189.99881 * 19 18 17 22 22 C 1.53174 * 109.16540 * 182.41096 * 21 19 18 23 23 C 1.53181 * 109.03899 * 56.98289 * 22 21 19 24 24 C 1.53091 * 109.15832 * 303.02184 * 23 22 21 25 25 O 1.42899 * 109.41914 * 57.60465 * 24 23 22 26 26 C 1.52997 * 117.51712 * 235.03155 * 9 7 2 27 27 C 1.52997 * 117.50039 * 303.66110 * 9 7 2 28 28 H 0.96993 * 119.99712 * 5.00712 * 1 2 3 29 29 H 1.08995 * 109.47298 * 160.12964 * 10 9 7 30 30 H 1.08998 * 109.47078 * 280.12846 * 10 9 7 31 31 H 0.96996 * 120.00353 * 245.00476 * 14 11 10 32 32 H 1.08995 * 109.47468 * 285.00371 * 15 14 11 33 33 H 1.09001 * 109.46805 * 44.99694 * 15 14 11 34 34 H 1.09004 * 109.47283 * 300.00834 * 16 15 14 35 35 H 1.09006 * 109.46451 * 60.00120 * 16 15 14 36 36 H 1.09002 * 109.47277 * 299.99706 * 17 16 15 37 37 H 1.08997 * 109.47300 * 60.00463 * 17 16 15 38 38 H 1.08997 * 109.52617 * 302.32006 * 21 19 18 39 39 H 1.09001 * 109.52096 * 62.50343 * 21 19 18 40 40 H 1.09006 * 109.54547 * 176.84711 * 22 21 19 41 41 H 1.09007 * 109.54712 * 297.11535 * 22 21 19 42 42 H 1.09000 * 109.52066 * 62.92133 * 23 22 21 43 43 H 1.08998 * 109.52502 * 183.11471 * 23 22 21 44 44 H 1.09005 * 109.48110 * 177.59240 * 24 23 22 45 45 H 1.09001 * 109.48303 * 297.61137 * 24 23 22 46 46 H 1.09006 * 117.50002 * 214.97200 * 26 9 7 47 47 H 1.08999 * 117.49899 * 359.97438 * 26 9 7 48 48 H 1.09007 * 117.49625 * 359.97438 * 27 9 7 49 49 H 1.09001 * 117.50106 * 144.97312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0767 -1.1985 -0.1301 9 6 1.2619 -2.4929 0.1796 10 6 0.7574 -3.1486 -1.1074 11 16 2.0144 -2.9810 -2.4045 12 8 2.0242 -1.6573 -2.9213 13 8 3.2202 -3.6250 -2.0165 14 7 1.4430 -3.9035 -3.6554 15 6 0.2030 -3.5252 -4.3377 16 6 0.0930 -4.2910 -5.6576 17 6 -1.2017 -3.8955 -6.3704 18 8 -1.3047 -4.6113 -7.6030 19 6 -2.4853 -4.3137 -8.3511 20 1 -3.3572 -4.3955 -7.7020 21 6 -2.6176 -5.3035 -9.5113 22 6 -3.8517 -4.9411 -10.3432 23 6 -3.7211 -3.4934 -10.8263 24 6 -3.5461 -2.5734 -9.6152 25 8 -2.3992 -2.9843 -8.8683 26 6 1.7172 -3.4164 1.3113 27 6 0.4010 -2.6462 1.4350 28 1 -0.4849 0.8368 -0.0733 29 1 0.5626 -4.2053 -0.9247 30 1 -0.1626 -2.6597 -1.4278 31 1 1.9292 -4.6944 -3.9363 32 1 -0.6495 -3.7691 -3.7039 33 1 0.2113 -2.4539 -4.5388 34 1 0.9456 -4.0470 -6.2915 35 1 0.0847 -5.3623 -5.4564 36 1 -2.0545 -4.1393 -5.7368 37 1 -1.1930 -2.8243 -6.5716 38 1 -1.7275 -5.2511 -10.1382 39 1 -2.7277 -6.3139 -9.1173 40 1 -3.9204 -5.6076 -11.2030 41 1 -4.7473 -5.0415 -9.7299 42 1 -2.8532 -3.4044 -11.4797 43 1 -4.6204 -3.2092 -11.3727 44 1 -3.4098 -1.5468 -9.9553 45 1 -4.4320 -2.6323 -8.9829 46 1 1.6572 -4.4910 1.1390 47 1 2.5543 -3.0847 1.9256 48 1 0.3720 -1.8077 2.1309 49 1 -0.5252 -3.2138 1.3440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451484255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:21 Heat of formation + Delta-G solvation = -160.286316 kcal Electronic energy + Delta-G solvation = -28840.367518 eV Core-core repulsion = 24701.888307 eV Total energy + Delta-G solvation = -4138.479211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.98647 -37.59707 -36.70896 -36.13779 -35.61683 -34.85555 -34.09823 -32.02867 -31.66094 -30.16721 -28.17510 -25.63404 -25.42011 -24.50175 -23.53380 -21.82660 -21.16780 -20.66875 -19.63238 -18.53236 -17.72518 -17.11821 -16.81451 -16.38404 -16.23994 -15.76687 -15.38298 -15.17226 -14.93615 -14.72585 -14.63595 -14.16183 -13.96420 -13.72633 -13.57762 -13.17544 -13.12086 -13.04527 -12.41896 -12.18428 -11.90359 -11.78193 -11.66428 -11.57074 -11.43881 -11.24485 -11.09351 -11.01980 -10.98052 -10.92142 -10.89802 -10.79427 -10.48589 -10.32474 -10.08069 -10.01685 -9.85335 -9.69780 -9.17007 -8.89328 -8.51041 -8.08872 -6.14636 -4.28604 1.21236 2.94736 3.32132 3.40885 3.46867 3.55999 3.73713 4.33207 4.36134 4.41036 4.47929 4.56088 4.62386 4.70867 4.86628 4.93072 4.96432 5.03644 5.06982 5.16744 5.19126 5.25780 5.29085 5.32560 5.39648 5.44800 5.49061 5.56944 5.58873 5.62961 5.69131 5.81493 5.94536 6.00969 6.06475 6.27424 6.34635 6.38321 6.63092 6.72804 6.73032 6.98107 6.98281 7.20787 7.35450 7.43593 7.80186 8.20571 8.80239 9.47800 10.92723 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002220 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.079038 B =12611.418856 C =13363.681502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.095 3.905 3 Si 0.892 3.108 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.048 3.952 10 C -0.561 4.561 11 S 2.625 3.375 12 O -0.944 6.944 13 O -0.974 6.974 14 N -1.137 6.137 15 C 0.120 3.880 16 C -0.123 4.123 17 C 0.061 3.939 18 O -0.366 6.366 19 C 0.256 3.744 20 H 0.053 0.947 21 C -0.141 4.141 22 C -0.121 4.121 23 C -0.161 4.161 24 C 0.071 3.929 25 O -0.404 6.404 26 C -0.205 4.205 27 C -0.140 4.140 28 H 0.264 0.736 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.409 0.591 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -10.693 -18.121 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.112 4.112 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.046 3.954 10 C -0.694 4.694 11 S 2.721 3.279 12 O -0.933 6.933 13 O -0.965 6.965 14 N -0.894 5.894 15 C -0.007 4.007 16 C -0.162 4.162 17 C -0.016 4.016 18 O -0.285 6.285 19 C 0.160 3.840 20 H 0.071 0.929 21 C -0.179 4.179 22 C -0.158 4.158 23 C -0.198 4.198 24 C -0.006 4.006 25 O -0.325 6.325 26 C -0.242 4.242 27 C -0.179 4.179 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.241 0.759 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.211 -9.931 -18.071 23.010 hybrid contribution -0.627 0.239 0.119 0.681 sum -10.838 -9.692 -17.952 23.102 Atomic orbital electron populations 1.69973 1.06169 1.27307 1.46653 1.24915 0.94743 0.99328 0.92236 0.86514 0.80819 0.83121 0.77637 1.19178 1.20324 1.20846 1.20631 0.93884 0.88866 1.54412 0.91219 1.18187 0.99360 0.94061 0.83812 1.29999 1.17280 1.06192 1.15883 1.04605 0.75621 0.73477 0.74165 1.93525 1.86312 1.36352 1.77156 1.93488 1.42958 1.76689 1.83350 1.56100 1.36352 1.44512 1.52388 1.21062 0.86366 1.00400 0.92897 1.21668 0.97571 1.01242 0.95715 1.22503 0.97905 0.96908 0.84268 1.87986 1.43394 1.63724 1.33372 1.22909 0.87665 0.82777 0.90679 0.92927 1.22020 0.99660 0.99288 0.96908 1.21597 0.97497 0.96718 0.99996 1.22257 1.03116 0.95594 0.98867 1.22518 0.87819 0.98647 0.91579 1.87846 1.41922 1.31763 1.70995 1.23150 0.99155 0.95728 1.06195 1.22489 0.91781 1.00804 1.02851 0.92635 0.88425 0.85669 0.75909 0.91878 0.89840 0.90137 0.90556 0.92816 0.91650 0.90041 0.90054 0.90697 0.91548 0.90691 0.90492 0.88411 0.93016 0.91321 0.89689 0.89536 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 12.78 55.43 0.71 -23.30 16 2 C 0.09 2.63 5.35 -17.82 -0.10 2.53 16 3 Si 0.89 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.54 -14.95 7.00 -34.44 -0.24 -15.19 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C 0.05 1.17 1.71 -155.67 -0.27 0.91 16 10 C -0.56 -11.68 6.18 37.16 0.23 -11.45 16 11 S 2.62 55.05 4.60 -107.50 -0.49 54.56 16 12 O -0.94 -23.38 16.74 -57.54 -0.96 -24.34 16 13 O -0.97 -22.64 18.08 -57.54 -1.04 -23.68 16 14 N -1.14 -17.34 5.89 -10.61 -0.06 -17.40 16 15 C 0.12 1.59 6.13 -4.04 -0.02 1.57 16 16 C -0.12 -1.38 5.73 -26.73 -0.15 -1.53 16 17 C 0.06 0.67 5.81 37.15 0.22 0.89 16 18 O -0.37 -4.30 10.25 -59.04 -0.61 -4.91 16 19 C 0.26 2.51 3.16 37.20 0.12 2.63 16 20 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 21 C -0.14 -1.07 5.79 -26.60 -0.15 -1.23 16 22 C -0.12 -0.68 6.03 -26.55 -0.16 -0.84 16 23 C -0.16 -0.92 6.14 -26.59 -0.16 -1.09 16 24 C 0.07 0.52 6.84 37.20 0.25 0.77 16 25 O -0.40 -4.42 10.25 -59.04 -0.61 -5.03 16 26 C -0.21 -4.49 9.88 -26.73 -0.26 -4.76 16 27 C -0.14 -3.22 9.25 -26.73 -0.25 -3.47 16 28 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.10 1.68 7.95 -51.93 -0.41 1.27 16 30 H 0.13 2.59 8.14 -51.92 -0.42 2.17 16 31 H 0.41 5.26 8.62 -34.47 -0.30 4.96 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.22 7.69 -51.93 -0.40 0.82 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 47 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 48 H 0.09 2.11 8.14 -51.92 -0.42 1.68 16 49 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 409.19 15.07 6.17 6.17 Total: -1.00 -34.36 409.19 -11.54 -45.89 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.67 Total: 5.35 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -0.95 Total: -30.25 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.65 Total: -40.70 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -3.21 Total: -57.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.49 Total: 54.56 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.36 -11.54 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451484255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.392 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds