Wall clock time and date at job start Wed Apr 1 2020 05:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00162 * 2 1 4 4 H 1.48496 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47228 * 300.00561 * 3 2 1 6 6 H 1.48503 * 109.47075 * 60.00226 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99559 * 172.03596 * 7 2 1 9 9 C 1.50694 * 119.99961 * 352.04027 * 7 2 1 10 10 C 1.53003 * 115.55139 * 89.33420 * 9 7 2 11 11 S 1.81404 * 109.47289 * 40.12661 * 10 9 7 12 12 O 1.42098 * 110.54189 * 283.93179 * 11 10 9 13 13 O 1.42101 * 110.54123 * 60.68272 * 11 10 9 14 14 N 1.65596 * 104.45011 * 172.30579 * 11 10 9 15 15 C 1.46506 * 119.99925 * 64.99974 * 14 11 10 16 16 C 1.52997 * 109.47289 * 164.99625 * 15 14 11 17 17 C 1.52995 * 109.47110 * 180.02562 * 16 15 14 18 18 O 1.42905 * 109.46906 * 180.02562 * 17 16 15 19 19 C 1.42900 * 114.00051 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.48247 * 310.03002 * 19 18 17 21 21 C 1.53083 * 109.48352 * 189.99881 * 19 18 17 22 22 C 1.53174 * 109.16540 * 182.41096 * 21 19 18 23 23 C 1.53181 * 109.03899 * 56.98289 * 22 21 19 24 24 C 1.53091 * 109.15832 * 303.02184 * 23 22 21 25 25 O 1.42899 * 109.41914 * 57.60465 * 24 23 22 26 26 C 1.52997 * 117.51712 * 235.03155 * 9 7 2 27 27 C 1.52997 * 117.50039 * 303.66110 * 9 7 2 28 28 H 0.96993 * 119.99712 * 5.00712 * 1 2 3 29 29 H 1.08995 * 109.47298 * 160.12964 * 10 9 7 30 30 H 1.08998 * 109.47078 * 280.12846 * 10 9 7 31 31 H 0.96996 * 120.00353 * 245.00476 * 14 11 10 32 32 H 1.08995 * 109.47468 * 285.00371 * 15 14 11 33 33 H 1.09001 * 109.46805 * 44.99694 * 15 14 11 34 34 H 1.09004 * 109.47283 * 300.00834 * 16 15 14 35 35 H 1.09006 * 109.46451 * 60.00120 * 16 15 14 36 36 H 1.09002 * 109.47277 * 299.99706 * 17 16 15 37 37 H 1.08997 * 109.47300 * 60.00463 * 17 16 15 38 38 H 1.08997 * 109.52617 * 302.32006 * 21 19 18 39 39 H 1.09001 * 109.52096 * 62.50343 * 21 19 18 40 40 H 1.09006 * 109.54547 * 176.84711 * 22 21 19 41 41 H 1.09007 * 109.54712 * 297.11535 * 22 21 19 42 42 H 1.09000 * 109.52066 * 62.92133 * 23 22 21 43 43 H 1.08998 * 109.52502 * 183.11471 * 23 22 21 44 44 H 1.09005 * 109.48110 * 177.59240 * 24 23 22 45 45 H 1.09001 * 109.48303 * 297.61137 * 24 23 22 46 46 H 1.09006 * 117.50002 * 214.97200 * 26 9 7 47 47 H 1.08999 * 117.49899 * 359.97438 * 26 9 7 48 48 H 1.09007 * 117.49625 * 359.97438 * 27 9 7 49 49 H 1.09001 * 117.50106 * 144.97312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0767 -1.1985 -0.1301 9 6 1.2619 -2.4929 0.1796 10 6 0.7574 -3.1486 -1.1074 11 16 2.0144 -2.9810 -2.4045 12 8 2.0242 -1.6573 -2.9213 13 8 3.2202 -3.6250 -2.0165 14 7 1.4430 -3.9035 -3.6554 15 6 0.2030 -3.5252 -4.3377 16 6 0.0930 -4.2910 -5.6576 17 6 -1.2017 -3.8955 -6.3704 18 8 -1.3047 -4.6113 -7.6030 19 6 -2.4853 -4.3137 -8.3511 20 1 -3.3572 -4.3955 -7.7020 21 6 -2.6176 -5.3035 -9.5113 22 6 -3.8517 -4.9411 -10.3432 23 6 -3.7211 -3.4934 -10.8263 24 6 -3.5461 -2.5734 -9.6152 25 8 -2.3992 -2.9843 -8.8683 26 6 1.7172 -3.4164 1.3113 27 6 0.4010 -2.6462 1.4350 28 1 -0.4849 0.8368 -0.0733 29 1 0.5626 -4.2053 -0.9247 30 1 -0.1626 -2.6597 -1.4278 31 1 1.9292 -4.6944 -3.9363 32 1 -0.6495 -3.7691 -3.7039 33 1 0.2113 -2.4539 -4.5388 34 1 0.9456 -4.0470 -6.2915 35 1 0.0847 -5.3623 -5.4564 36 1 -2.0545 -4.1393 -5.7368 37 1 -1.1930 -2.8243 -6.5716 38 1 -1.7275 -5.2511 -10.1382 39 1 -2.7277 -6.3139 -9.1173 40 1 -3.9204 -5.6076 -11.2030 41 1 -4.7473 -5.0415 -9.7299 42 1 -2.8532 -3.4044 -11.4797 43 1 -4.6204 -3.2092 -11.3727 44 1 -3.4098 -1.5468 -9.9553 45 1 -4.4320 -2.6323 -8.9829 46 1 1.6572 -4.4910 1.1390 47 1 2.5543 -3.0847 1.9256 48 1 0.3720 -1.8077 2.1309 49 1 -0.5252 -3.2138 1.3440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451484255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:20 Heat of formation + Delta-G solvation = -184.254101 kcal Electronic energy + Delta-G solvation = -28841.406839 eV Core-core repulsion = 24701.888307 eV Total energy + Delta-G solvation = -4139.518532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.65714 -38.52499 -38.42060 -37.84602 -36.82806 -36.56579 -34.67202 -34.08445 -32.57844 -30.89925 -29.86647 -27.50194 -26.40656 -25.25427 -24.17640 -22.93360 -22.76946 -21.48376 -21.19725 -20.15147 -18.53643 -18.50216 -18.09975 -17.82649 -17.22917 -16.89939 -16.75453 -16.55607 -16.31297 -15.79932 -15.72021 -15.40026 -15.16386 -14.88630 -14.71965 -14.55630 -13.91660 -13.80347 -13.73121 -13.68985 -13.51613 -13.03933 -12.90126 -12.85767 -12.82452 -12.64736 -12.49819 -12.43500 -12.33984 -12.15192 -12.05840 -12.00704 -11.85624 -11.82806 -11.54889 -11.46392 -10.87010 -10.80906 -10.53080 -10.48067 -10.39213 -9.87176 -8.22935 -6.39583 -0.42064 1.34198 1.39371 1.48309 2.07320 2.35246 2.39104 2.97012 3.04833 3.09368 3.37580 3.60178 3.78684 3.84477 3.89383 3.94109 3.98825 3.99322 4.05602 4.12287 4.25916 4.35306 4.42735 4.49217 4.55936 4.59959 4.62312 4.62675 4.66981 4.75822 4.80960 4.85305 4.87441 5.01353 5.01663 5.08581 5.10699 5.13158 5.21712 5.25246 5.33606 5.43558 5.64367 5.69074 6.00267 6.20526 6.22093 6.29765 6.69663 7.37249 8.83860 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002220 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.079038 B =12611.418856 C =13363.681502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.056 3.944 3 Si 0.927 3.073 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.046 0.954 9 C 0.010 3.990 10 C -0.554 4.554 11 S 2.634 3.366 12 O -0.992 6.992 13 O -1.003 7.003 14 N -1.119 6.119 15 C 0.112 3.888 16 C -0.114 4.114 17 C 0.061 3.939 18 O -0.383 6.383 19 C 0.246 3.754 20 H 0.066 0.934 21 C -0.139 4.139 22 C -0.118 4.118 23 C -0.158 4.158 24 C 0.062 3.938 25 O -0.434 6.434 26 C -0.191 4.191 27 C -0.137 4.137 28 H 0.267 0.733 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.422 0.578 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -12.537 -18.689 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.149 4.149 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.593 4.593 8 H 0.065 0.935 9 C 0.008 3.992 10 C -0.687 4.687 11 S 2.732 3.268 12 O -0.981 6.981 13 O -0.993 6.993 14 N -0.880 5.880 15 C -0.014 4.014 16 C -0.153 4.153 17 C -0.016 4.016 18 O -0.302 6.302 19 C 0.151 3.849 20 H 0.083 0.917 21 C -0.177 4.177 22 C -0.155 4.155 23 C -0.195 4.195 24 C -0.014 4.014 25 O -0.357 6.357 26 C -0.228 4.228 27 C -0.176 4.176 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.258 0.742 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.988 -11.775 -18.642 25.097 hybrid contribution -0.086 0.785 0.257 0.830 sum -12.073 -10.990 -18.385 24.588 Atomic orbital electron populations 1.69993 1.06536 1.27847 1.47344 1.25438 0.95553 1.01424 0.92444 0.85974 0.79662 0.80957 0.78131 1.19772 1.20374 1.19161 1.20762 0.93139 0.90993 1.54388 0.93543 1.18351 1.00839 0.94076 0.85908 1.29853 1.16555 1.08484 1.13795 1.03970 0.75404 0.72751 0.74716 1.93467 1.87033 1.39433 1.78197 1.93439 1.44875 1.76869 1.84147 1.55515 1.37202 1.44325 1.50956 1.21282 0.85995 0.99800 0.94360 1.21562 0.97465 1.01957 0.94286 1.22472 0.98400 0.96098 0.84587 1.87950 1.44669 1.63909 1.33715 1.23214 0.87281 0.82989 0.91414 0.91690 1.22046 1.00118 0.99250 0.96248 1.21622 0.96817 0.96735 1.00316 1.22240 1.03654 0.95489 0.98124 1.22757 0.87223 0.99285 0.92156 1.87801 1.43725 1.32433 1.71709 1.23230 0.98277 0.97191 1.04137 1.22430 0.93206 1.00584 1.01343 0.92408 0.84249 0.85636 0.74202 0.89363 0.91717 0.91096 0.88622 0.90920 0.93125 0.91466 0.89141 0.89321 0.90394 0.91680 0.88412 0.88016 0.91856 0.87974 0.90356 0.91844 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.93 12.78 21.45 0.27 -48.66 16 2 C 0.06 3.15 5.35 84.66 0.45 3.60 16 3 Si 0.93 45.30 29.55 68.60 2.03 47.33 16 4 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.56 -31.06 7.00 25.60 0.18 -30.88 16 8 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 9 C 0.01 0.49 1.71 -52.93 -0.09 0.40 16 10 C -0.55 -21.99 6.18 71.98 0.44 -21.54 16 11 S 2.63 109.25 4.60 -56.49 -0.26 108.99 16 12 O -0.99 -50.15 16.74 -127.65 -2.14 -52.29 16 13 O -1.00 -46.29 18.08 -127.65 -2.31 -48.59 16 14 N -1.12 -32.44 5.89 -187.49 -1.10 -33.55 16 15 C 0.11 2.81 6.13 86.38 0.53 3.34 16 16 C -0.11 -2.37 5.73 30.59 0.18 -2.20 16 17 C 0.06 1.28 5.81 71.98 0.42 1.70 16 18 O -0.38 -8.67 10.25 -126.21 -1.29 -9.97 16 19 C 0.25 4.60 3.16 72.01 0.23 4.83 16 20 H 0.07 1.02 8.09 -2.38 -0.02 1.00 16 21 C -0.14 -1.94 5.79 30.68 0.18 -1.77 16 22 C -0.12 -1.07 6.03 30.71 0.19 -0.89 16 23 C -0.16 -1.56 6.14 30.69 0.19 -1.37 16 24 C 0.06 0.84 6.84 72.01 0.49 1.33 16 25 O -0.43 -9.39 10.25 -126.21 -1.29 -10.69 16 26 C -0.19 -7.99 9.88 30.59 0.30 -7.69 16 27 C -0.14 -6.06 9.25 30.59 0.28 -5.77 16 28 H 0.27 14.05 8.32 -92.71 -0.77 13.28 16 29 H 0.14 4.26 7.95 -2.39 -0.02 4.24 16 30 H 0.13 4.98 8.14 -2.39 -0.02 4.96 16 31 H 0.42 10.04 8.62 -96.75 -0.83 9.21 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.89 7.69 -2.39 -0.02 1.87 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.19 7.89 -2.39 -0.02 1.17 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.10 3.56 8.09 -2.38 -0.02 3.54 16 47 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.06 3.07 8.14 -2.38 -0.02 3.05 16 49 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -74.95 409.19 -2.04 -76.99 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.09 Total: 27.33 kcal Atomic # 6 Polarization: -60.87 SS G_CDS: 3.97 Total: -56.90 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -0.83 Total: -82.20 kcal Atomic # 8 Polarization: -114.50 SS G_CDS: -7.03 Total: -121.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 109.25 SS G_CDS: -0.26 Total: 108.99 kcal Total: -74.95 -2.04 -76.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451484255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.268 kcal (2) G-P(sol) polarization free energy of solvation -74.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds