Wall clock time and date at job start Wed Apr 1 2020 04:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 C 1.54832 * 119.62111 * 187.76335 * 23 22 21 25 25 C 1.55235 * 81.33573 * 161.70138 * 24 23 22 26 26 C 1.55596 * 118.87205 * 285.99826 * 23 22 21 27 27 C 1.56790 * 101.25278 * 62.19598 * 25 24 23 28 28 O 1.45503 * 99.22490 * 316.81308 * 27 25 24 29 29 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 35 35 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 38 38 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 39 39 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 40 40 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 41 41 H 1.09003 * 114.55317 * 274.22936 * 24 23 22 42 42 H 1.09000 * 114.55720 * 48.00801 * 24 23 22 43 43 H 1.09003 * 121.31135 * 196.18373 * 25 24 23 44 44 H 1.09002 * 114.63065 * 311.30917 * 26 23 22 45 45 H 1.08995 * 114.62851 * 85.33790 * 26 23 22 46 46 H 1.08997 * 111.45093 * 199.31262 * 27 25 24 47 47 H 1.09004 * 111.49242 * 74.32845 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0679 -3.8482 -0.0006 13 6 5.3221 -5.0186 0.0004 14 6 5.9960 -6.2319 0.0004 15 6 7.3767 -6.2393 -0.0013 16 7 8.0615 -5.1112 -0.0032 17 6 7.4599 -3.9333 -0.0091 18 7 8.2248 -2.7655 -0.0166 19 6 9.5704 -2.8413 -0.0232 20 8 10.1181 -3.9269 -0.0232 21 7 10.3088 -1.7139 -0.0310 22 6 11.7714 -1.7963 -0.0388 23 6 12.3616 -0.3847 -0.0473 24 6 13.8862 -0.1939 -0.2383 25 6 13.4241 1.2448 -0.5937 26 6 12.2978 0.4484 -1.3599 27 6 12.7695 1.6984 0.7568 28 8 12.0366 0.4838 1.0803 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6796 0.8894 31 1 3.8746 -0.6807 -0.8905 32 1 3.6585 -3.1502 0.8903 33 1 3.6578 -3.1505 -0.8897 34 1 4.2426 -4.9860 0.0017 35 1 5.4457 -7.1612 0.0007 36 1 7.9038 -7.1819 -0.0009 37 1 7.7877 -1.8995 -0.0170 38 1 9.8718 -0.8479 -0.0314 39 1 12.1102 -2.3268 0.8511 40 1 12.1005 -2.3327 -0.9288 41 1 14.4694 -0.2584 0.6804 42 1 14.3134 -0.7598 -1.0661 43 1 14.0831 1.9388 -1.1155 44 1 12.6351 -0.0811 -2.2509 45 1 11.3675 0.9977 -1.5043 46 1 12.0963 2.5429 0.6097 47 1 13.5241 1.9213 1.5113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529064311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:00 Heat of formation + Delta-G solvation = -21.817389 kcal Electronic energy + Delta-G solvation = -29700.791013 eV Core-core repulsion = 25465.165066 eV Total energy + Delta-G solvation = -4235.625948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.46939 -42.03293 -40.63072 -39.13947 -36.18178 -35.70560 -35.38693 -34.53744 -33.05754 -32.49855 -30.89000 -29.72244 -27.30690 -26.83621 -26.31641 -24.76284 -23.93119 -22.61168 -21.83786 -21.71164 -21.18807 -19.89477 -19.45781 -19.02919 -18.24987 -17.41844 -17.26402 -17.09997 -16.86358 -16.59879 -16.30389 -16.18547 -15.90623 -15.58515 -15.29919 -15.15973 -15.06406 -14.74089 -14.42301 -14.10437 -13.88475 -13.72605 -13.32906 -13.31330 -13.21164 -12.85686 -12.84049 -12.70900 -12.21718 -12.19052 -11.89476 -11.82848 -11.72977 -11.64542 -11.54328 -11.45480 -11.25945 -10.80386 -10.51163 -10.43607 -10.24185 -10.13137 -8.82976 -8.33409 -6.40083 0.14969 0.30233 1.35545 1.37250 1.39307 1.50803 2.07018 2.10731 2.34131 2.55375 2.86317 2.91775 3.02182 3.16295 3.28458 3.44107 3.51645 3.59030 3.85980 3.96825 4.01530 4.13456 4.24920 4.30751 4.43976 4.46568 4.48755 4.59025 4.65030 4.67829 4.70929 4.80420 4.82200 4.95001 4.95380 5.00482 5.05099 5.06574 5.15512 5.27798 5.32338 5.32729 5.48242 5.55015 5.57414 5.77778 6.17015 6.30132 6.66496 6.68109 7.14188 7.25161 7.49706 8.82162 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008029 B = 0.002741 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.622291 B =10212.185540 C =13456.114465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.043 0.957 9 C -0.005 4.005 10 C 0.086 3.914 11 O -0.325 6.325 12 C 0.041 3.959 13 C -0.147 4.147 14 C -0.148 4.148 15 C 0.077 3.923 16 N -0.472 5.472 17 C 0.332 3.668 18 N -0.660 5.660 19 C 0.696 3.304 20 O -0.573 6.573 21 N -0.727 5.727 22 C 0.182 3.818 23 C 0.042 3.958 24 C -0.151 4.151 25 C -0.146 4.146 26 C -0.147 4.147 27 C 0.041 3.959 28 O -0.385 6.385 29 H 0.269 0.731 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.425 0.575 38 H 0.409 0.591 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.142 0.858 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.602 -1.413 -2.622 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.061 0.939 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.239 6.239 12 C -0.010 4.010 13 C -0.174 4.174 14 C -0.169 4.169 15 C -0.080 4.080 16 N -0.188 5.188 17 C 0.099 3.901 18 N -0.310 5.310 19 C 0.395 3.605 20 O -0.448 6.448 21 N -0.384 5.384 22 C 0.059 3.941 23 C 0.002 3.998 24 C -0.189 4.189 25 C -0.164 4.164 26 C -0.185 4.185 27 C -0.035 4.035 28 O -0.305 6.305 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.191 0.809 36 H 0.203 0.797 37 H 0.263 0.737 38 H 0.244 0.756 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.138 0.862 43 H 0.160 0.840 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 29.886 -2.107 -2.407 30.057 hybrid contribution -1.806 1.548 0.142 2.383 sum 28.080 -0.559 -2.264 28.177 Atomic orbital electron populations 1.70029 1.08183 1.28435 1.51692 1.25882 0.95580 1.03340 0.93774 0.85693 0.79555 0.78325 0.79344 1.18990 1.20953 1.17011 1.21120 0.90632 0.93837 1.51708 0.93877 1.19436 0.94205 0.92655 0.98002 1.22754 0.75175 0.99791 1.01099 1.85972 1.23247 1.25909 1.88747 1.19600 0.90935 0.86998 1.03475 1.21878 1.01696 0.91571 1.02224 1.22266 0.95203 0.98955 1.00502 1.23047 0.91953 0.95806 0.97171 1.67678 1.39455 0.97045 1.14586 1.17646 0.84338 0.87141 1.01010 1.42467 1.04992 1.08031 1.75484 1.16056 0.81049 0.84970 0.78410 1.90991 1.70808 1.27308 1.55680 1.44898 1.06936 1.07142 1.79436 1.20691 0.77336 0.93113 1.03005 1.24337 0.97014 0.90422 0.88029 1.24415 0.93948 0.97100 1.03453 1.25240 0.98848 0.96241 0.96025 1.24796 0.99438 0.98002 0.96225 1.24158 0.95611 0.87767 0.95934 1.89728 1.71695 1.26833 1.42257 0.92205 0.95259 0.95242 0.92042 0.91915 0.82822 0.80887 0.79711 0.73654 0.75587 0.92016 0.88768 0.90778 0.86176 0.84049 0.85850 0.90952 0.89616 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.95 42.43 27.47 68.60 1.88 44.31 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.25 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.54 -29.27 9.66 25.60 0.25 -29.02 16 8 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 9 C -0.01 -0.24 4.41 29.85 0.13 -0.11 16 10 C 0.09 3.22 4.70 71.98 0.34 3.56 16 11 O -0.33 -11.24 9.39 -93.36 -0.88 -12.11 16 12 C 0.04 1.31 6.72 22.70 0.15 1.46 16 13 C -0.15 -4.00 9.14 22.53 0.21 -3.79 16 14 C -0.15 -3.28 10.10 22.36 0.23 -3.05 16 15 C 0.08 1.93 11.17 84.63 0.95 2.88 16 16 N -0.47 -15.59 7.87 -192.58 -1.52 -17.11 16 17 C 0.33 10.87 7.45 132.98 0.99 11.86 16 18 N -0.66 -19.42 5.40 -321.76 -1.74 -21.15 16 19 C 0.70 20.67 8.53 179.06 1.53 22.20 16 20 O -0.57 -20.99 14.59 -4.00 -0.06 -21.05 16 21 N -0.73 -15.99 5.56 -478.54 -2.66 -18.65 16 22 C 0.18 3.43 5.97 86.38 0.52 3.95 16 23 C 0.04 0.62 1.94 -14.75 -0.03 0.59 16 24 C -0.15 -1.50 7.40 29.38 0.22 -1.29 16 25 C -0.15 -1.25 6.52 -12.48 -0.08 -1.34 16 26 C -0.15 -1.55 7.82 30.58 0.24 -1.31 16 27 C 0.04 0.51 7.91 73.31 0.58 1.09 16 28 O -0.38 -7.45 11.87 -148.98 -1.77 -9.22 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 31 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 32 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 33 H 0.06 2.26 7.70 -2.39 -0.02 2.24 16 34 H 0.15 3.87 6.44 -2.91 -0.02 3.85 16 35 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.19 3.40 8.06 -2.91 -0.02 3.37 16 37 H 0.43 10.90 8.06 -92.71 -0.75 10.16 16 38 H 0.41 7.64 8.49 -92.71 -0.79 6.85 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 42 H 0.12 0.76 7.89 -2.39 -0.02 0.74 16 43 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.12 0.91 7.89 -2.39 -0.02 0.89 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.45 390.05 -0.34 -75.78 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.57 Total: 27.10 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.67 Total: 8.82 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -5.61 Total: -113.63 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -2.70 Total: -42.38 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Total: -75.45 -0.34 -75.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529064311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.965 kcal (2) G-P(sol) polarization free energy of solvation -75.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds