Wall clock time and date at job start Wed Apr 1 2020 04:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00146 * 2 1 4 4 H 1.48506 * 109.47273 * 240.00049 * 3 2 1 5 5 H 1.48497 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47344 * 120.00267 * 3 2 1 7 7 C 1.37886 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.45625 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.30999 * 178.62592 * 10 9 7 12 12 N 1.46925 * 108.77482 * 54.63581 * 11 10 9 13 13 C 1.34777 * 120.63186 * 126.36628 * 12 11 10 14 14 O 1.21589 * 119.99760 * 185.28447 * 13 12 11 15 15 N 1.34768 * 120.00108 * 5.28932 * 13 12 11 16 16 C 1.39945 * 120.00264 * 185.22316 * 15 13 12 17 17 C 1.38922 * 120.04390 * 213.19178 * 16 15 13 18 18 C 1.38122 * 120.04357 * 179.97438 * 17 16 15 19 19 C 1.38219 * 120.11822 * 0.02562 * 18 17 16 20 20 C 1.38756 * 120.08562 * 0.02562 * 19 18 17 21 21 O 1.35907 * 120.01976 * 179.97438 * 20 19 18 22 22 C 1.42894 * 116.99872 * 359.97438 * 21 20 19 23 23 C 1.50700 * 109.46841 * 179.97438 * 22 21 20 24 24 N 1.34784 * 119.99678 * 179.97438 * 23 22 21 25 25 O 1.21276 * 120.00183 * 0.02562 * 23 22 21 26 26 C 1.38631 * 119.96218 * 0.26612 * 20 19 18 27 27 C 1.46933 * 118.73651 * 306.64227 * 12 11 10 28 28 C 1.52757 * 109.01066 * 53.31096 * 27 12 11 29 29 H 0.96996 * 120.00076 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45711 * 299.97270 * 9 7 2 31 31 H 1.08996 * 109.50204 * 58.67669 * 10 9 7 32 32 H 1.09001 * 109.52322 * 298.59249 * 10 9 7 33 33 H 1.08996 * 109.58912 * 294.84798 * 11 10 9 34 34 H 1.09002 * 109.70414 * 174.48788 * 11 10 9 35 35 H 0.97010 * 119.99925 * 5.22564 * 15 13 12 36 36 H 1.08005 * 119.97890 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.94148 * 180.02562 * 18 17 16 38 38 H 1.08008 * 119.95350 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47161 * 299.99841 * 22 21 20 40 40 H 1.08999 * 109.47370 * 60.00006 * 22 21 20 41 41 H 0.97001 * 119.99741 * 359.97438 * 24 23 22 42 42 H 0.96997 * 119.99588 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.06479 * 179.72391 * 26 20 19 44 44 H 1.09004 * 109.58309 * 173.14682 * 27 12 11 45 45 H 1.09004 * 109.58366 * 293.56725 * 27 12 11 46 46 H 1.08995 * 109.56692 * 185.55212 * 28 27 12 47 47 H 1.09002 * 109.38935 * 65.51300 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0341 12 7 0.5224 -5.0088 -1.0829 13 6 0.5122 -6.0344 -1.9572 14 8 -0.2150 -5.9960 -2.9308 15 7 1.3079 -7.1026 -1.7521 16 6 1.3794 -8.1169 -2.7137 17 6 1.5736 -9.4352 -2.3210 18 6 1.6436 -10.4363 -3.2700 19 6 1.5212 -10.1294 -4.6122 20 6 1.3283 -8.8143 -5.0102 21 8 1.2087 -8.5140 -6.3303 22 6 1.2920 -9.6017 -7.2531 23 6 1.1381 -9.0808 -8.6588 24 7 1.1841 -9.9329 -9.7021 25 8 0.9739 -7.8947 -8.8514 26 6 1.2635 -7.8060 -4.0610 27 6 -0.4165 -3.8884 -1.2322 28 6 0.3701 -2.5790 -1.2495 29 1 -0.4850 0.8400 0.0004 30 1 0.6251 -2.5571 0.8900 31 1 2.8881 -3.5916 0.8771 32 1 2.8561 -3.6195 -0.9026 33 1 0.9370 -5.0713 0.9774 34 1 2.1735 -5.8190 -0.0642 35 1 1.8312 -7.1685 -0.9379 36 1 1.6698 -9.6775 -1.2729 37 1 1.7941 -11.4607 -2.9629 38 1 1.5760 -10.9144 -5.3520 39 1 2.2603 -10.0917 -7.1508 40 1 0.4981 -10.3184 -7.0427 41 1 1.3167 -10.8814 -9.5481 42 1 1.0855 -9.5975 -10.6069 43 1 1.1178 -6.7812 -4.3692 44 1 -0.9667 -3.9949 -2.1671 45 1 -1.1136 -3.8817 -0.3943 46 1 -0.3224 -1.7374 -1.2607 47 1 0.9977 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541971471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:06 Heat of formation + Delta-G solvation = -67.413139 kcal Electronic energy + Delta-G solvation = -29905.271705 eV Core-core repulsion = 25667.668577 eV Total energy + Delta-G solvation = -4237.603128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86166 -40.23267 -39.25611 -37.76486 -36.71018 -34.49673 -34.16148 -33.51799 -31.22219 -30.81221 -30.34332 -29.01008 -28.39024 -26.16250 -23.63667 -22.84959 -22.62491 -22.06367 -21.07417 -20.18312 -19.08343 -18.78458 -18.04218 -17.63974 -16.89843 -16.64973 -16.35395 -16.19206 -15.99965 -15.61058 -15.11606 -14.68157 -14.54048 -14.50709 -14.06975 -13.81799 -13.55905 -13.27747 -13.13265 -12.90764 -12.75957 -12.60235 -12.31743 -12.02509 -11.84053 -11.52581 -11.31452 -11.13207 -10.91266 -10.68287 -10.45874 -10.34402 -10.23692 -10.17847 -10.06280 -9.79213 -9.56693 -9.21667 -8.92809 -8.45624 -8.36602 -8.23392 -7.89100 -6.01029 -4.07777 1.21501 1.35557 2.16426 2.34365 2.80828 3.30848 3.31835 3.36782 3.39109 3.49609 3.80183 4.06269 4.30561 4.42360 4.52362 4.61973 4.72470 4.88294 5.06867 5.18334 5.28247 5.29188 5.43710 5.66161 5.70214 5.82892 6.00683 6.10710 6.15256 6.21972 6.28756 6.32121 6.37061 6.40038 6.48557 6.59020 6.73868 6.76677 6.87501 6.94641 7.06733 7.21433 7.26950 7.43238 7.70750 7.79560 7.92992 8.04308 8.13063 8.40565 8.76288 8.95069 9.57298 11.04427 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002194 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.853501 B =12761.172689 C =14116.480970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.110 3.890 12 N -0.611 5.611 13 C 0.701 3.299 14 O -0.576 6.576 15 N -0.690 5.690 16 C 0.219 3.781 17 C -0.188 4.188 18 C -0.060 4.060 19 C -0.236 4.236 20 C 0.147 3.853 21 O -0.287 6.287 22 C 0.041 3.959 23 C 0.517 3.483 24 N -0.853 5.853 25 O -0.512 6.512 26 C -0.150 4.150 27 C 0.125 3.875 28 C -0.125 4.125 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.402 0.598 42 H 0.408 0.592 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -27.065 -9.444 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.013 4.013 12 N -0.347 5.347 13 C 0.403 3.597 14 O -0.453 6.453 15 N -0.339 5.339 16 C 0.122 3.878 17 C -0.209 4.209 18 C -0.079 4.079 19 C -0.256 4.256 20 C 0.101 3.899 21 O -0.199 6.199 22 C -0.038 4.038 23 C 0.300 3.700 24 N -0.420 5.420 25 O -0.385 6.385 26 C -0.172 4.172 27 C 0.004 3.996 28 C -0.163 4.163 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.230 0.770 42 H 0.240 0.760 43 H 0.166 0.834 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.123 0.877 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.007 -25.752 -10.091 27.822 hybrid contribution 0.852 0.249 0.171 0.904 sum 3.859 -25.503 -9.920 27.635 Atomic orbital electron populations 1.69824 1.05848 1.26649 1.50530 1.24964 0.94876 0.99084 0.95041 0.86671 0.79623 0.83210 0.78557 1.20319 1.21302 1.20354 1.21134 0.92830 0.90568 1.50745 0.92784 1.18622 0.92547 0.91526 0.94165 1.22012 0.98976 0.94107 1.01089 1.21792 0.91139 0.99267 0.89137 1.47529 1.38066 1.20632 1.28481 1.15888 0.80524 0.79918 0.83338 1.90929 1.44305 1.80299 1.29788 1.42930 1.47961 1.20514 1.22532 1.17154 0.95976 0.87100 0.87597 1.20764 1.09395 0.90663 1.00093 1.20603 0.96827 0.98685 0.91760 1.21086 1.12163 0.94828 0.97509 1.18716 0.95769 0.93001 0.82447 1.86194 1.87632 1.32885 1.13216 1.22404 1.03737 0.90167 0.87519 1.20121 0.76547 0.86700 0.86629 1.43652 1.77664 1.11376 1.09284 1.90852 1.46158 1.15880 1.85606 1.20400 1.06585 1.00455 0.89735 1.21765 0.90880 0.85452 1.01528 1.21963 1.00198 0.94812 0.99337 0.92856 0.95432 0.91982 0.92773 0.91578 0.92259 0.75369 0.85590 0.85464 0.85740 0.88838 0.88831 0.76968 0.76003 0.83438 0.90308 0.92300 0.87660 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 10 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 11 C 0.11 1.70 6.35 -3.71 -0.02 1.68 16 12 N -0.61 -11.03 2.98 -178.76 -0.53 -11.56 16 13 C 0.70 12.76 8.04 -86.93 -0.70 12.06 16 14 O -0.58 -12.47 13.45 5.29 0.07 -12.40 16 15 N -0.69 -9.78 5.21 -14.24 -0.07 -9.85 16 16 C 0.22 3.04 6.27 -83.71 -0.53 2.51 16 17 C -0.19 -1.99 9.96 -39.37 -0.39 -2.38 16 18 C -0.06 -0.54 10.03 -39.63 -0.40 -0.94 16 19 C -0.24 -2.28 9.04 -39.40 -0.36 -2.64 16 20 C 0.15 1.95 6.68 -39.24 -0.26 1.69 16 21 O -0.29 -3.95 9.67 -39.36 -0.38 -4.33 16 22 C 0.04 0.33 5.22 36.01 0.19 0.51 16 23 C 0.52 4.92 8.18 -10.98 -0.09 4.83 16 24 N -0.85 -3.59 8.87 31.22 0.28 -3.31 16 25 O -0.51 -8.01 17.34 -14.35 -0.25 -8.26 16 26 C -0.15 -2.39 8.59 -39.25 -0.34 -2.72 16 27 C 0.13 2.53 6.41 -3.93 -0.03 2.51 16 28 C -0.12 -2.90 5.14 -26.83 -0.14 -3.04 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.71 5.74 -51.93 -0.30 0.41 16 35 H 0.41 4.51 6.41 -40.82 -0.26 4.25 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.77 6.29 -52.48 -0.33 0.44 16 39 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 40 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.40 0.16 8.83 -40.82 -0.36 -0.20 16 42 H 0.41 1.48 8.93 -40.82 -0.36 1.11 16 43 H 0.15 2.82 6.43 -52.49 -0.34 2.49 16 44 H 0.08 1.65 6.99 -51.93 -0.36 1.28 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.11 2.73 6.03 -51.93 -0.31 2.42 16 47 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -36.49 382.80 -9.64 -46.13 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.35 Total: 5.77 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.78 Total: 0.16 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.30 Total: -48.93 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.56 Total: -24.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.49 -9.64 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541971471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.288 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds