Wall clock time and date at job start Wed Apr 1 2020 04:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00146 * 2 1 4 4 H 1.48506 * 109.47273 * 240.00049 * 3 2 1 5 5 H 1.48497 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47344 * 120.00267 * 3 2 1 7 7 C 1.37886 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.45625 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.30999 * 178.62592 * 10 9 7 12 12 N 1.46925 * 108.77482 * 54.63581 * 11 10 9 13 13 C 1.34777 * 120.63186 * 126.36628 * 12 11 10 14 14 O 1.21589 * 119.99760 * 185.28447 * 13 12 11 15 15 N 1.34768 * 120.00108 * 5.28932 * 13 12 11 16 16 C 1.39945 * 120.00264 * 185.22316 * 15 13 12 17 17 C 1.38922 * 120.04390 * 213.19178 * 16 15 13 18 18 C 1.38122 * 120.04357 * 179.97438 * 17 16 15 19 19 C 1.38219 * 120.11822 * 0.02562 * 18 17 16 20 20 C 1.38756 * 120.08562 * 0.02562 * 19 18 17 21 21 O 1.35907 * 120.01976 * 179.97438 * 20 19 18 22 22 C 1.42894 * 116.99872 * 359.97438 * 21 20 19 23 23 C 1.50700 * 109.46841 * 179.97438 * 22 21 20 24 24 N 1.34784 * 119.99678 * 179.97438 * 23 22 21 25 25 O 1.21276 * 120.00183 * 0.02562 * 23 22 21 26 26 C 1.38631 * 119.96218 * 0.26612 * 20 19 18 27 27 C 1.46933 * 118.73651 * 306.64227 * 12 11 10 28 28 C 1.52757 * 109.01066 * 53.31096 * 27 12 11 29 29 H 0.96996 * 120.00076 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45711 * 299.97270 * 9 7 2 31 31 H 1.08996 * 109.50204 * 58.67669 * 10 9 7 32 32 H 1.09001 * 109.52322 * 298.59249 * 10 9 7 33 33 H 1.08996 * 109.58912 * 294.84798 * 11 10 9 34 34 H 1.09002 * 109.70414 * 174.48788 * 11 10 9 35 35 H 0.97010 * 119.99925 * 5.22564 * 15 13 12 36 36 H 1.08005 * 119.97890 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.94148 * 180.02562 * 18 17 16 38 38 H 1.08008 * 119.95350 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47161 * 299.99841 * 22 21 20 40 40 H 1.08999 * 109.47370 * 60.00006 * 22 21 20 41 41 H 0.97001 * 119.99741 * 359.97438 * 24 23 22 42 42 H 0.96997 * 119.99588 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.06479 * 179.72391 * 26 20 19 44 44 H 1.09004 * 109.58309 * 173.14682 * 27 12 11 45 45 H 1.09004 * 109.58366 * 293.56725 * 27 12 11 46 46 H 1.08995 * 109.56692 * 185.55212 * 28 27 12 47 47 H 1.09002 * 109.38935 * 65.51300 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0341 12 7 0.5224 -5.0088 -1.0829 13 6 0.5122 -6.0344 -1.9572 14 8 -0.2150 -5.9960 -2.9308 15 7 1.3079 -7.1026 -1.7521 16 6 1.3794 -8.1169 -2.7137 17 6 1.5736 -9.4352 -2.3210 18 6 1.6436 -10.4363 -3.2700 19 6 1.5212 -10.1294 -4.6122 20 6 1.3283 -8.8143 -5.0102 21 8 1.2087 -8.5140 -6.3303 22 6 1.2920 -9.6017 -7.2531 23 6 1.1381 -9.0808 -8.6588 24 7 1.1841 -9.9329 -9.7021 25 8 0.9739 -7.8947 -8.8514 26 6 1.2635 -7.8060 -4.0610 27 6 -0.4165 -3.8884 -1.2322 28 6 0.3701 -2.5790 -1.2495 29 1 -0.4850 0.8400 0.0004 30 1 0.6251 -2.5571 0.8900 31 1 2.8881 -3.5916 0.8771 32 1 2.8561 -3.6195 -0.9026 33 1 0.9370 -5.0713 0.9774 34 1 2.1735 -5.8190 -0.0642 35 1 1.8312 -7.1685 -0.9379 36 1 1.6698 -9.6775 -1.2729 37 1 1.7941 -11.4607 -2.9629 38 1 1.5760 -10.9144 -5.3520 39 1 2.2603 -10.0917 -7.1508 40 1 0.4981 -10.3184 -7.0427 41 1 1.3167 -10.8814 -9.5481 42 1 1.0855 -9.5975 -10.6069 43 1 1.1178 -6.7812 -4.3692 44 1 -0.9667 -3.9949 -2.1671 45 1 -1.1136 -3.8817 -0.3943 46 1 -0.3224 -1.7374 -1.2607 47 1 0.9977 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541971471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:05 Heat of formation + Delta-G solvation = -94.761052 kcal Electronic energy + Delta-G solvation = -29906.457599 eV Core-core repulsion = 25667.668577 eV Total energy + Delta-G solvation = -4238.789022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99730 -41.21663 -40.17458 -38.97728 -38.02499 -35.76660 -35.25457 -34.81938 -32.97294 -31.92857 -31.64354 -30.08885 -29.09413 -27.96222 -25.12666 -24.24923 -23.70902 -23.25009 -22.06194 -21.43802 -20.48416 -19.90083 -18.96133 -18.63424 -18.32978 -17.73123 -17.35700 -17.12276 -16.93425 -16.72764 -16.55921 -16.35317 -15.77872 -15.40898 -15.29934 -14.95407 -14.84121 -14.68371 -14.39799 -14.34057 -14.06357 -13.94064 -13.56675 -13.42727 -13.03361 -12.80958 -12.70149 -12.52539 -12.37198 -12.20835 -12.16910 -11.95992 -11.45522 -11.36607 -11.22383 -11.09566 -10.96955 -10.82292 -10.77193 -10.41738 -9.69697 -9.36524 -8.96611 -8.08437 -6.22103 0.31549 0.49550 1.40823 1.42503 1.46658 1.46796 1.49429 1.76027 1.99679 2.43010 2.72764 2.86576 2.94277 3.18196 3.78526 3.99217 4.00758 4.06309 4.14078 4.15680 4.22375 4.29669 4.31125 4.40508 4.44535 4.56478 4.60549 4.67133 4.77847 4.86270 4.94770 5.14176 5.18880 5.29204 5.33496 5.37476 5.43453 5.49889 5.52429 5.64522 5.78437 5.89327 5.95641 5.99485 6.09505 6.31080 6.37432 6.50514 6.82399 6.89011 7.26201 7.39871 7.45796 8.94875 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002194 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.853501 B =12761.172689 C =14116.480970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.117 4.117 11 C 0.114 3.886 12 N -0.615 5.615 13 C 0.699 3.301 14 O -0.619 6.619 15 N -0.673 5.673 16 C 0.193 3.807 17 C -0.179 4.179 18 C -0.048 4.048 19 C -0.220 4.220 20 C 0.132 3.868 21 O -0.331 6.331 22 C 0.034 3.966 23 C 0.512 3.488 24 N -0.823 5.823 25 O -0.590 6.590 26 C -0.193 4.193 27 C 0.138 3.862 28 C -0.113 4.113 29 H 0.260 0.740 30 H 0.009 0.991 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.424 0.576 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.425 0.575 42 H 0.413 0.587 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -31.971 -8.499 33.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.028 3.972 10 C -0.155 4.155 11 C -0.008 4.008 12 N -0.350 5.350 13 C 0.401 3.599 14 O -0.499 6.499 15 N -0.324 5.324 16 C 0.097 3.903 17 C -0.199 4.199 18 C -0.066 4.066 19 C -0.239 4.239 20 C 0.086 3.914 21 O -0.245 6.245 22 C -0.044 4.044 23 C 0.296 3.704 24 N -0.390 5.390 25 O -0.469 6.469 26 C -0.215 4.215 27 C 0.015 3.985 28 C -0.152 4.152 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.265 0.735 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.257 0.743 42 H 0.246 0.754 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 4.817 -30.775 -9.144 32.465 hybrid contribution 0.334 1.629 -0.251 1.682 sum 5.151 -29.146 -9.395 31.053 Atomic orbital electron populations 1.69961 1.07019 1.27154 1.51293 1.25720 0.95685 1.02284 0.94990 0.85736 0.78464 0.79497 0.78687 1.20362 1.21151 1.19246 1.21560 0.93058 0.92180 1.50344 0.92932 1.18601 0.93103 0.92562 0.92967 1.21872 0.98174 0.94222 1.01221 1.21928 0.91217 0.98700 0.88964 1.47449 1.38224 1.20032 1.29327 1.16040 0.80695 0.80682 0.82496 1.90909 1.46249 1.81262 1.31487 1.42636 1.47059 1.19453 1.23211 1.17425 0.97904 0.88390 0.86583 1.21150 1.07604 0.88955 1.02235 1.21214 0.94125 1.00383 0.90918 1.21563 1.09429 0.93718 0.99149 1.18855 0.96477 0.94074 0.81982 1.86139 1.87967 1.36228 1.14140 1.22823 1.07045 0.89267 0.85259 1.20607 0.75465 0.86062 0.88254 1.43439 1.75001 1.12073 1.08450 1.90825 1.50233 1.19158 1.86706 1.20270 1.10250 0.99002 0.91981 1.21388 0.90935 0.84945 1.01200 1.21724 0.99439 0.95615 0.98407 0.93047 0.97253 0.90272 0.94071 0.89654 0.87884 0.73488 0.82495 0.80739 0.81347 0.84974 0.85367 0.74264 0.75447 0.88753 0.91776 0.91357 0.90737 0.96585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 11.31 21.45 0.24 -52.66 16 2 C 0.01 0.66 5.30 84.66 0.45 1.11 16 3 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -29.11 8.56 25.60 0.22 -28.89 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.24 2.07 -11.51 -0.02 2.22 16 10 C -0.12 -4.39 5.30 30.67 0.16 -4.23 16 11 C 0.11 3.34 6.35 86.36 0.55 3.89 16 12 N -0.61 -22.47 2.98 -837.72 -2.50 -24.97 16 13 C 0.70 26.15 8.04 179.06 1.44 27.59 16 14 O -0.62 -28.73 13.45 -4.00 -0.05 -28.78 16 15 N -0.67 -18.56 5.21 -317.23 -1.65 -20.21 16 16 C 0.19 5.21 6.27 38.13 0.24 5.45 16 17 C -0.18 -3.07 9.96 22.41 0.22 -2.85 16 18 C -0.05 -0.60 10.03 22.24 0.22 -0.38 16 19 C -0.22 -3.30 9.04 22.39 0.20 -3.10 16 20 C 0.13 3.46 6.68 22.49 0.15 3.61 16 21 O -0.33 -9.35 9.67 -73.47 -0.71 -10.06 16 22 C 0.03 0.47 5.22 71.24 0.37 0.84 16 23 C 0.51 9.50 8.18 87.66 0.72 10.22 16 24 N -0.82 -5.31 8.87 -173.53 -1.54 -6.85 16 25 O -0.59 -19.70 17.34 16.02 0.28 -19.42 16 26 C -0.19 -6.48 8.59 22.49 0.19 -6.28 16 27 C 0.14 5.87 6.41 86.22 0.55 6.43 16 28 C -0.11 -5.59 5.14 30.53 0.16 -5.43 16 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.10 2.14 5.74 -2.39 -0.01 2.12 16 35 H 0.42 8.27 6.41 -92.70 -0.59 7.68 16 36 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.17 0.96 6.29 -2.91 -0.02 0.94 16 39 H 0.13 0.75 7.66 -2.39 -0.02 0.73 16 40 H 0.13 0.83 7.66 -2.39 -0.02 0.81 16 41 H 0.42 -1.15 8.83 -92.71 -0.82 -1.97 16 42 H 0.41 2.43 8.93 -92.71 -0.83 1.61 16 43 H 0.09 4.10 6.43 -2.91 -0.02 4.08 16 44 H 0.06 2.89 6.99 -2.39 -0.02 2.87 16 45 H 0.07 2.75 8.14 -2.38 -0.02 2.74 16 46 H 0.07 4.14 6.03 -2.39 -0.01 4.12 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -90.72 382.80 0.73 -90.00 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -1.19 Total: 16.60 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.82 Total: 10.20 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -5.44 Total: -104.69 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.49 Total: -58.26 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -90.72 0.73 -90.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541971471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.765 kcal (2) G-P(sol) polarization free energy of solvation -90.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds