Wall clock time and date at job start Wed Apr 1 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48496 * 109.47404 * 270.00561 * 3 2 1 5 5 H 1.48509 * 109.46800 * 30.00342 * 3 2 1 6 6 H 1.48502 * 109.47190 * 150.00243 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00222 * 197.35577 * 7 2 1 9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1 10 10 C 1.46926 * 120.63025 * 27.68147 * 9 7 2 11 11 C 1.53196 * 108.77330 * 126.41169 * 10 9 7 12 12 C 1.53036 * 109.31153 * 54.63535 * 11 10 9 13 13 C 1.53040 * 109.52564 * 298.63618 * 12 11 10 14 14 H 1.08996 * 109.49977 * 301.40595 * 13 12 11 15 15 C 1.53006 * 109.49618 * 181.31217 * 13 12 11 16 16 N 1.46497 * 109.47016 * 174.99865 * 15 13 12 17 17 C 1.34779 * 119.99775 * 179.97438 * 16 15 13 18 18 O 1.21551 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.47880 * 119.99799 * 180.02562 * 17 16 15 20 20 C 1.39286 * 119.60679 * 179.73252 * 19 17 16 21 21 C 1.38526 * 119.12307 * 179.78768 * 20 19 17 22 22 C 1.38922 * 118.53354 * 0.51992 * 21 20 19 23 23 C 1.39718 * 119.43514 * 359.61253 * 22 21 20 24 24 N 1.31994 * 120.36458 * 0.20428 * 23 22 21 25 25 O 1.35989 * 120.44402 * 180.44605 * 23 22 21 26 26 C 1.43133 * 116.72134 * 342.43711 * 25 23 22 27 27 C 1.53463 * 108.34353 * 46.50816 * 26 25 23 28 28 O 1.35787 * 119.57758 * 179.45551 * 22 21 20 29 29 C 1.46928 * 120.63130 * 207.70078 * 9 7 2 30 30 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.58637 * 6.62167 * 10 9 7 32 32 H 1.09002 * 109.69767 * 246.26726 * 10 9 7 33 33 H 1.08999 * 109.49381 * 294.67945 * 11 10 9 34 34 H 1.08997 * 109.48976 * 174.58485 * 11 10 9 35 35 H 1.08997 * 109.46301 * 58.65646 * 12 11 10 36 36 H 1.09003 * 109.45735 * 178.62479 * 12 11 10 37 37 H 1.09000 * 109.47034 * 295.00342 * 15 13 12 38 38 H 1.09002 * 109.46784 * 55.00347 * 15 13 12 39 39 H 0.96994 * 120.00052 * 0.02562 * 16 15 13 40 40 H 1.07995 * 120.43673 * 0.05499 * 20 19 17 41 41 H 1.08001 * 120.73838 * 180.24657 * 21 20 19 42 42 H 1.09001 * 109.69163 * 286.80198 * 26 25 23 43 43 H 1.09000 * 109.69420 * 166.22153 * 26 25 23 44 44 H 1.08994 * 109.71361 * 180.46539 * 27 26 25 45 45 H 1.09003 * 109.74814 * 59.85212 * 27 26 25 46 46 H 1.09002 * 109.58312 * 353.37150 * 29 9 7 47 47 H 1.08993 * 109.58721 * 113.65366 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0535 -1.2234 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2756 11 6 0.5006 -3.3037 -2.4297 12 6 0.8185 -4.6890 -1.8624 13 6 2.0742 -4.6092 -0.9912 14 1 2.9080 -4.2391 -1.5877 15 6 2.4101 -6.0007 -0.4508 16 7 3.6765 -5.9466 0.2837 17 6 4.1738 -7.0628 0.8524 18 8 3.5718 -8.1143 0.7553 19 6 5.4519 -7.0081 1.5943 20 6 5.9555 -8.1654 2.1835 21 6 7.1558 -8.1037 2.8724 22 6 7.8092 -6.8808 2.9588 23 6 7.2474 -5.7573 2.3470 24 7 6.1036 -5.8544 1.6955 25 8 7.8741 -4.5521 2.4110 26 6 8.8787 -4.4019 3.4194 27 6 9.7875 -5.6379 3.3837 28 8 8.9816 -6.7938 3.6384 29 6 1.8192 -3.6547 0.1792 30 1 -0.4850 0.8400 0.0004 31 1 0.0985 -1.3255 -1.6684 32 1 -0.6757 -2.6391 -0.7477 33 1 1.3492 -2.9457 -3.0127 34 1 -0.3802 -3.3656 -3.0687 35 1 -0.0206 -5.0357 -1.2592 36 1 0.9891 -5.3868 -2.6822 37 1 1.6159 -6.3321 0.2181 38 1 2.5015 -6.7006 -1.2814 39 1 4.1567 -5.1074 0.3614 40 1 5.4196 -9.0993 2.1007 41 1 7.5722 -8.9858 3.3358 42 1 8.4069 -4.3213 4.3987 43 1 9.4681 -3.5068 3.2203 44 1 10.5575 -5.5504 4.1501 45 1 10.2539 -5.7239 2.4022 46 1 2.7401 -3.5176 0.7461 47 1 1.0480 -4.0678 0.8292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594421802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:49 Heat of formation + Delta-G solvation = -46.689076 kcal Electronic energy + Delta-G solvation = -30431.262531 eV Core-core repulsion = 26194.558066 eV Total energy + Delta-G solvation = -4236.704465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90465 -40.04449 -38.51567 -37.81059 -37.61889 -34.83394 -33.10312 -32.51741 -31.84588 -30.42012 -30.32894 -29.19990 -26.14378 -25.30154 -25.14385 -24.28232 -22.36508 -21.97721 -20.97150 -20.59564 -19.37323 -18.94845 -18.31463 -18.03884 -17.23001 -16.57638 -16.20051 -15.73245 -15.50172 -15.31030 -14.90233 -14.86646 -14.78294 -14.41104 -14.25130 -13.91776 -13.70745 -13.43617 -13.37398 -13.07332 -12.73334 -12.31066 -12.27049 -12.12695 -11.92871 -11.91044 -11.56405 -11.24636 -10.97538 -10.69664 -10.44761 -10.41804 -10.16644 -10.12828 -9.92117 -9.86540 -9.69680 -9.49188 -9.37677 -8.93973 -8.60315 -8.42314 -6.63431 -5.74884 -3.17067 0.33100 0.81369 2.21319 2.49549 2.65949 3.20388 3.40355 3.47048 3.48431 3.55205 3.59733 3.97701 4.21540 4.33083 4.42394 4.52079 4.61280 4.70616 4.92246 4.96715 5.01775 5.14925 5.30722 5.34550 5.48417 5.51917 5.60176 5.67249 5.86881 5.88819 5.99135 6.05229 6.17129 6.28780 6.37405 6.42124 6.54228 6.65556 6.69400 6.74585 6.83626 6.90587 7.02203 7.38203 7.44287 7.69654 7.71912 7.84010 8.23076 8.48848 9.25420 9.88847 10.45495 11.33492 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.002925 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.532537 B = 9571.769826 C =11997.958211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.125 3.875 16 N -0.700 5.700 17 C 0.573 3.427 18 O -0.538 6.538 19 C 0.091 3.909 20 C -0.106 4.106 21 C -0.081 4.081 22 C 0.030 3.970 23 C 0.265 3.735 24 N -0.440 5.440 25 O -0.289 6.289 26 C 0.025 3.975 27 C 0.017 3.983 28 O -0.300 6.300 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.086 0.914 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.415 0.585 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.087 -14.860 5.215 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.001 3.999 16 N -0.351 5.351 17 C 0.357 3.643 18 O -0.416 6.416 19 C -0.047 4.047 20 C -0.127 4.127 21 C -0.107 4.107 22 C -0.019 4.019 23 C 0.082 3.918 24 N -0.163 5.163 25 O -0.198 6.198 26 C -0.052 4.052 27 C -0.058 4.058 28 O -0.213 6.213 29 C 0.026 3.974 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.252 0.748 40 H 0.178 0.822 41 H 0.172 0.828 42 H 0.102 0.898 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 17.257 -14.623 4.800 23.123 hybrid contribution 1.230 0.822 0.550 1.578 sum 18.487 -13.802 5.349 23.683 Atomic orbital electron populations 1.70042 1.05246 1.25413 1.54041 1.25019 0.95259 0.98358 1.01022 0.86302 0.79142 0.83751 0.77669 1.21481 1.21831 1.20426 1.19215 0.92733 0.84876 1.41245 0.91615 1.44044 1.35795 1.01203 1.50292 1.20798 0.88533 0.98418 0.87968 1.22171 1.00073 0.95966 0.99881 1.21339 0.96689 0.97746 0.97944 1.21951 0.98898 0.93496 0.99513 0.90733 1.21561 0.84483 0.98276 0.95547 1.45973 1.24320 1.11844 1.52915 1.17610 0.83406 0.84269 0.79052 1.90787 1.59885 1.29879 1.61039 1.20885 0.95757 0.88372 0.99706 1.21922 0.94987 1.00111 0.95718 1.20900 0.94930 0.95580 0.99314 1.19953 0.88824 0.94455 0.98674 1.19284 0.90656 0.84605 0.97270 1.66638 1.05116 1.27601 1.16905 1.86297 1.50964 1.29197 1.53346 1.23799 0.89335 1.00009 0.92011 1.23779 0.93204 0.84137 1.04700 1.86264 1.29007 1.43965 1.62038 1.20903 0.97595 0.86789 0.92092 0.93696 0.89557 0.96470 0.92750 0.93200 0.92444 0.93411 0.91230 0.91625 0.74806 0.82199 0.82770 0.89780 0.84974 0.85344 0.89853 0.92969 0.96350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -14.89 2.99 -172.34 -0.52 -15.40 16 10 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 11 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 12 C -0.10 -1.66 5.17 -26.69 -0.14 -1.80 16 13 C -0.12 -2.02 2.37 -90.51 -0.21 -2.24 16 14 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.12 1.90 5.07 -4.04 -0.02 1.88 16 16 N -0.70 -10.67 5.32 -61.24 -0.33 -10.99 16 17 C 0.57 8.78 7.80 -12.31 -0.10 8.69 16 18 O -0.54 -9.21 16.31 5.32 0.09 -9.13 16 19 C 0.09 1.24 6.74 -83.07 -0.56 0.68 16 20 C -0.11 -1.15 9.62 -39.09 -0.38 -1.53 16 21 C -0.08 -0.75 10.08 -39.22 -0.40 -1.15 16 22 C 0.03 0.31 6.51 -38.78 -0.25 0.06 16 23 C 0.26 3.37 7.55 -16.93 -0.13 3.24 16 24 N -0.44 -6.34 9.55 -9.70 -0.09 -6.43 16 25 O -0.29 -3.41 10.51 -32.33 -0.34 -3.75 16 26 C 0.02 0.16 7.24 37.40 0.27 0.43 16 27 C 0.02 0.09 7.26 37.40 0.27 0.36 16 28 O -0.30 -2.60 10.42 -31.70 -0.33 -2.93 16 29 C 0.15 3.21 5.60 -3.73 -0.02 3.19 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.41 6.40 7.02 -40.82 -0.29 6.11 16 40 H 0.16 1.51 7.63 -52.49 -0.40 1.11 16 41 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 1.09 7.14 -51.93 -0.37 0.72 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.79 382.01 -9.08 -42.87 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.84 Total: 3.10 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.07 Total: 5.86 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.31 Total: -58.64 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.58 Total: -15.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.79 -9.08 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594421802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.817 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds