Wall clock time and date at job start Wed Apr 1 2020 04:38:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 119.99750 * 2 1
4 4 H 1.48496 * 109.47404 * 270.00561 * 3 2 1
5 5 H 1.48509 * 109.46800 * 30.00342 * 3 2 1
6 6 H 1.48502 * 109.47190 * 150.00243 * 3 2 1
7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00222 * 197.35577 * 7 2 1
9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1
10 10 C 1.46926 * 120.63025 * 27.68147 * 9 7 2
11 11 C 1.53196 * 108.77330 * 126.41169 * 10 9 7
12 12 C 1.53036 * 109.31153 * 54.63535 * 11 10 9
13 13 C 1.53040 * 109.52564 * 298.63618 * 12 11 10
14 14 H 1.08996 * 109.49977 * 301.40595 * 13 12 11
15 15 C 1.53006 * 109.49618 * 181.31217 * 13 12 11
16 16 N 1.46497 * 109.47016 * 174.99865 * 15 13 12
17 17 C 1.34779 * 119.99775 * 179.97438 * 16 15 13
18 18 O 1.21551 * 119.99879 * 0.02562 * 17 16 15
19 19 C 1.47880 * 119.99799 * 180.02562 * 17 16 15
20 20 C 1.39286 * 119.60679 * 179.73252 * 19 17 16
21 21 C 1.38526 * 119.12307 * 179.78768 * 20 19 17
22 22 C 1.38922 * 118.53354 * 0.51992 * 21 20 19
23 23 C 1.39718 * 119.43514 * 359.61253 * 22 21 20
24 24 N 1.31994 * 120.36458 * 0.20428 * 23 22 21
25 25 O 1.35989 * 120.44402 * 180.44605 * 23 22 21
26 26 C 1.43133 * 116.72134 * 342.43711 * 25 23 22
27 27 C 1.53463 * 108.34353 * 46.50816 * 26 25 23
28 28 O 1.35787 * 119.57758 * 179.45551 * 22 21 20
29 29 C 1.46928 * 120.63130 * 207.70078 * 9 7 2
30 30 H 0.96998 * 120.00355 * 359.97438 * 1 2 3
31 31 H 1.08995 * 109.58637 * 6.62167 * 10 9 7
32 32 H 1.09002 * 109.69767 * 246.26726 * 10 9 7
33 33 H 1.08999 * 109.49381 * 294.67945 * 11 10 9
34 34 H 1.08997 * 109.48976 * 174.58485 * 11 10 9
35 35 H 1.08997 * 109.46301 * 58.65646 * 12 11 10
36 36 H 1.09003 * 109.45735 * 178.62479 * 12 11 10
37 37 H 1.09000 * 109.47034 * 295.00342 * 15 13 12
38 38 H 1.09002 * 109.46784 * 55.00347 * 15 13 12
39 39 H 0.96994 * 120.00052 * 0.02562 * 16 15 13
40 40 H 1.07995 * 120.43673 * 0.05499 * 20 19 17
41 41 H 1.08001 * 120.73838 * 180.24657 * 21 20 19
42 42 H 1.09001 * 109.69163 * 286.80198 * 26 25 23
43 43 H 1.09000 * 109.69420 * 166.22153 * 26 25 23
44 44 H 1.08994 * 109.71361 * 180.46539 * 27 26 25
45 45 H 1.09003 * 109.74814 * 59.85212 * 27 26 25
46 46 H 1.09002 * 109.58312 * 353.37150 * 29 9 7
47 47 H 1.08993 * 109.58721 * 113.65366 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4975 2.0466 -1.4000
5 1 1.4474 2.6527 0.7002
6 1 3.5477 1.4403 0.7000
7 6 2.0103 -1.2020 -0.0005
8 1 3.0535 -1.2234 0.2785
9 7 1.3724 -2.3609 -0.3547
10 6 0.2278 -2.3340 -1.2756
11 6 0.5006 -3.3037 -2.4297
12 6 0.8185 -4.6890 -1.8624
13 6 2.0742 -4.6092 -0.9912
14 1 2.9080 -4.2391 -1.5877
15 6 2.4101 -6.0007 -0.4508
16 7 3.6765 -5.9466 0.2837
17 6 4.1738 -7.0628 0.8524
18 8 3.5718 -8.1143 0.7553
19 6 5.4519 -7.0081 1.5943
20 6 5.9555 -8.1654 2.1835
21 6 7.1558 -8.1037 2.8724
22 6 7.8092 -6.8808 2.9588
23 6 7.2474 -5.7573 2.3470
24 7 6.1036 -5.8544 1.6955
25 8 7.8741 -4.5521 2.4110
26 6 8.8787 -4.4019 3.4194
27 6 9.7875 -5.6379 3.3837
28 8 8.9816 -6.7938 3.6384
29 6 1.8192 -3.6547 0.1792
30 1 -0.4850 0.8400 0.0004
31 1 0.0985 -1.3255 -1.6684
32 1 -0.6757 -2.6391 -0.7477
33 1 1.3492 -2.9457 -3.0127
34 1 -0.3802 -3.3656 -3.0687
35 1 -0.0206 -5.0357 -1.2592
36 1 0.9891 -5.3868 -2.6822
37 1 1.6159 -6.3321 0.2181
38 1 2.5015 -6.7006 -1.2814
39 1 4.1567 -5.1074 0.3614
40 1 5.4196 -9.0993 2.1007
41 1 7.5722 -8.9858 3.3358
42 1 8.4069 -4.3213 4.3987
43 1 9.4681 -3.5068 3.2203
44 1 10.5575 -5.5504 4.1501
45 1 10.2539 -5.7239 2.4022
46 1 2.7401 -3.5176 0.7461
47 1 1.0480 -4.0678 0.8292
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594421802.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:48
Heat of formation + Delta-G solvation = -71.406431 kcal
Electronic energy + Delta-G solvation = -30432.334355 eV
Core-core repulsion = 26194.558066 eV
Total energy + Delta-G solvation = -4237.776290 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.66357 -41.10209 -39.66434 -39.02737 -38.51909 -36.31985 -34.73765 -33.47642
-32.60479 -32.29845 -31.79938 -29.99734 -27.38287 -27.13028 -26.07486 -25.26393
-23.84667 -23.16301 -22.35092 -21.70736 -20.75336 -19.98027 -19.08357 -18.93776
-18.62301 -18.02518 -17.02829 -16.92477 -16.81727 -16.46068 -16.15191 -15.83576
-15.61364 -15.58145 -15.44353 -15.31190 -15.02934 -14.64578 -14.51193 -14.36769
-14.03877 -13.92503 -13.73918 -13.54302 -13.03007 -12.88126 -12.73051 -12.52327
-12.48807 -12.27353 -12.17640 -11.96332 -11.82374 -11.62828 -11.52706 -11.23195
-11.09291 -10.71880 -10.53683 -10.51875 -10.15057 -9.45095 -8.68422 -7.87269
-5.32786 -0.55948 0.00155 1.45377 1.45719 1.47122 1.56134 1.60946
1.91550 2.11366 2.50659 2.63788 2.87634 3.26564 3.29082 3.45266
3.59303 3.80247 3.87767 3.98231 3.98741 4.01262 4.04860 4.08413
4.17163 4.42032 4.51803 4.55371 4.56909 4.57968 4.61058 4.75011
4.83047 4.88344 4.90691 5.01573 5.11415 5.12805 5.21831 5.33119
5.37519 5.44860 5.48320 5.56921 5.66836 5.79298 5.96392 6.34125
6.39298 6.66190 7.05507 7.15018 7.86181 8.37677 9.18769
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.010278 B = 0.002925 C = 0.002333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2723.532537 B = 9571.769826 C =11997.958211
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.050 4.050
3 Si 0.966 3.034
4 H -0.284 1.284
5 H -0.294 1.294
6 H -0.270 1.270
7 C -0.263 4.263
8 H 0.064 0.936
9 N -0.609 5.609
10 C 0.172 3.828
11 C -0.130 4.130
12 C -0.095 4.095
13 C -0.101 4.101
14 H 0.072 0.928
15 C 0.134 3.866
16 N -0.703 5.703
17 C 0.573 3.427
18 O -0.560 6.560
19 C 0.064 3.936
20 C -0.098 4.098
21 C -0.073 4.073
22 C 0.039 3.961
23 C 0.246 3.754
24 N -0.471 5.471
25 O -0.318 6.318
26 C 0.015 3.985
27 C 0.015 3.985
28 O -0.302 6.302
29 C 0.153 3.847
30 H 0.250 0.750
31 H 0.052 0.948
32 H -0.005 1.005
33 H 0.051 0.949
34 H 0.072 0.928
35 H 0.059 0.941
36 H 0.084 0.916
37 H 0.066 0.934
38 H 0.082 0.918
39 H 0.413 0.587
40 H 0.174 0.826
41 H 0.190 0.810
42 H 0.086 0.914
43 H 0.160 0.840
44 H 0.168 0.832
45 H 0.089 0.911
46 H 0.046 0.954
47 H 0.008 0.992
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.569 -16.375 5.404 26.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.245 4.245
3 Si 0.794 3.206
4 H -0.210 1.210
5 H -0.221 1.221
6 H -0.194 1.194
7 C -0.393 4.393
8 H 0.082 0.918
9 N -0.332 5.332
10 C 0.047 3.953
11 C -0.169 4.169
12 C -0.133 4.133
13 C -0.122 4.122
14 H 0.090 0.910
15 C 0.011 3.989
16 N -0.353 5.353
17 C 0.359 3.641
18 O -0.440 6.440
19 C -0.073 4.073
20 C -0.119 4.119
21 C -0.098 4.098
22 C -0.011 4.011
23 C 0.063 3.937
24 N -0.194 5.194
25 O -0.228 6.228
26 C -0.060 4.060
27 C -0.059 4.059
28 O -0.215 6.215
29 C 0.028 3.972
30 H 0.059 0.941
31 H 0.070 0.930
32 H 0.013 0.987
33 H 0.070 0.930
34 H 0.091 0.909
35 H 0.077 0.923
36 H 0.102 0.898
37 H 0.084 0.916
38 H 0.101 0.899
39 H 0.249 0.751
40 H 0.191 0.809
41 H 0.208 0.792
42 H 0.104 0.896
43 H 0.178 0.822
44 H 0.185 0.815
45 H 0.107 0.893
46 H 0.065 0.935
47 H 0.026 0.974
Dipole moment (debyes) X Y Z Total
from point charges 19.768 -16.159 4.991 26.015
hybrid contribution 0.571 1.318 0.601 1.557
sum 20.339 -14.841 5.592 25.792
Atomic orbital electron populations
1.70195 1.06653 1.25816 1.55420 1.25774 0.96033 1.01450 1.01286
0.85285 0.78091 0.79571 0.77639 1.21046 1.22083 1.19433 1.19515
0.92909 0.86184 1.40717 0.91805 1.44306 1.35913 1.01976 1.51041
1.20654 0.87570 0.97936 0.89173 1.22005 1.00983 0.95965 0.97988
1.21333 0.96253 0.96824 0.98901 1.21716 0.99236 0.93454 0.97766
0.90962 1.21433 0.84519 0.97013 0.95952 1.45992 1.24269 1.11935
1.53114 1.17876 0.83885 0.83726 0.78641 1.90758 1.60788 1.30415
1.62018 1.20714 0.95662 0.89427 1.01502 1.22100 0.95387 0.99557
0.94860 1.21271 0.93936 0.96338 0.98295 1.20051 0.89351 0.94084
0.97587 1.19497 0.90689 0.85695 0.97863 1.66479 1.06398 1.28377
1.18170 1.86251 1.52176 1.29270 1.55077 1.24196 0.88810 1.01926
0.91083 1.24123 0.92976 0.82259 1.06555 1.86267 1.28284 1.45429
1.61478 1.20985 0.96708 0.85978 0.93566 0.94112 0.92972 0.98726
0.93017 0.90933 0.92267 0.89792 0.91615 0.89950 0.75071 0.80897
0.79244 0.89605 0.82230 0.81495 0.89260 0.93539 0.97394
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.53 11.19 21.65 0.24 -56.29 16
2 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16
3 Si 0.97 45.83 29.59 68.60 2.03 47.86 16
4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16
5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16
6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
7 C -0.26 -14.92 9.58 84.03 0.81 -14.11 16
8 H 0.06 3.56 7.89 -2.91 -0.02 3.54 16
9 N -0.61 -31.50 2.99 -699.15 -2.09 -33.59 16
10 C 0.17 8.51 5.31 86.36 0.46 8.97 16
11 C -0.13 -4.88 6.08 30.67 0.19 -4.69 16
12 C -0.10 -3.00 5.17 30.62 0.16 -2.85 16
13 C -0.10 -3.40 2.37 -10.72 -0.03 -3.42 16
14 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16
15 C 0.13 3.97 5.07 86.38 0.44 4.41 16
16 N -0.70 -21.50 5.32 -465.93 -2.48 -23.98 16
17 C 0.57 17.62 7.80 86.80 0.68 18.29 16
18 O -0.56 -18.96 16.31 -3.88 -0.06 -19.03 16
19 C 0.06 1.74 6.74 41.79 0.28 2.02 16
20 C -0.10 -2.00 9.62 22.59 0.22 -1.78 16
21 C -0.07 -1.19 10.08 22.50 0.23 -0.96 16
22 C 0.04 0.75 6.51 22.79 0.15 0.90 16
23 C 0.25 6.20 7.55 85.03 0.64 6.84 16
24 N -0.47 -13.80 9.55 -297.44 -2.84 -16.64 16
25 O -0.32 -7.43 10.51 -81.36 -0.85 -8.29 16
26 C 0.01 0.17 7.24 72.14 0.52 0.69 16
27 C 0.02 0.12 7.26 72.14 0.52 0.64 16
28 O -0.30 -4.44 10.42 -79.10 -0.82 -5.26 16
29 C 0.15 6.57 5.60 86.35 0.48 7.05 16
30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16
31 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16
32 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16
33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
35 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16
36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
37 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16
38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
39 H 0.41 13.05 7.02 -92.71 -0.65 12.40 16
40 H 0.17 2.99 7.63 -2.91 -0.02 2.97 16
41 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16
42 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16
43 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16
44 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16
45 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
46 H 0.05 2.00 7.14 -2.39 -0.02 1.99 16
47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
Total: -1.00 -76.05 382.01 -0.37 -76.43
By element:
Atomic # 1 Polarization: 18.88 SS G_CDS: 0.35 Total: 19.23 kcal
Atomic # 6 Polarization: 13.40 SS G_CDS: 6.16 Total: 19.56 kcal
Atomic # 7 Polarization: -123.33 SS G_CDS: -7.17 Total: -130.50 kcal
Atomic # 8 Polarization: -30.84 SS G_CDS: -1.74 Total: -32.58 kcal
Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal
Total: -76.05 -0.37 -76.43 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594421802.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.022 kcal
(2) G-P(sol) polarization free energy of solvation -76.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds