Wall clock time and date at job start Wed Apr 1 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48496 * 109.47404 * 270.00561 * 3 2 1 5 5 H 1.48509 * 109.46800 * 30.00342 * 3 2 1 6 6 H 1.48502 * 109.47190 * 150.00243 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00222 * 197.35577 * 7 2 1 9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1 10 10 C 1.46926 * 120.63025 * 27.68147 * 9 7 2 11 11 C 1.53196 * 108.77330 * 126.41169 * 10 9 7 12 12 C 1.53036 * 109.31153 * 54.63535 * 11 10 9 13 13 C 1.53040 * 109.52564 * 298.63618 * 12 11 10 14 14 H 1.08996 * 109.49977 * 301.40595 * 13 12 11 15 15 C 1.53006 * 109.49618 * 181.31217 * 13 12 11 16 16 N 1.46497 * 109.47016 * 174.99865 * 15 13 12 17 17 C 1.34779 * 119.99775 * 179.97438 * 16 15 13 18 18 O 1.21551 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.47880 * 119.99799 * 180.02562 * 17 16 15 20 20 C 1.39286 * 119.60679 * 179.73252 * 19 17 16 21 21 C 1.38526 * 119.12307 * 179.78768 * 20 19 17 22 22 C 1.38922 * 118.53354 * 0.51992 * 21 20 19 23 23 C 1.39718 * 119.43514 * 359.61253 * 22 21 20 24 24 N 1.31994 * 120.36458 * 0.20428 * 23 22 21 25 25 O 1.35989 * 120.44402 * 180.44605 * 23 22 21 26 26 C 1.43133 * 116.72134 * 342.43711 * 25 23 22 27 27 C 1.53463 * 108.34353 * 46.50816 * 26 25 23 28 28 O 1.35787 * 119.57758 * 179.45551 * 22 21 20 29 29 C 1.46928 * 120.63130 * 207.70078 * 9 7 2 30 30 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.58637 * 6.62167 * 10 9 7 32 32 H 1.09002 * 109.69767 * 246.26726 * 10 9 7 33 33 H 1.08999 * 109.49381 * 294.67945 * 11 10 9 34 34 H 1.08997 * 109.48976 * 174.58485 * 11 10 9 35 35 H 1.08997 * 109.46301 * 58.65646 * 12 11 10 36 36 H 1.09003 * 109.45735 * 178.62479 * 12 11 10 37 37 H 1.09000 * 109.47034 * 295.00342 * 15 13 12 38 38 H 1.09002 * 109.46784 * 55.00347 * 15 13 12 39 39 H 0.96994 * 120.00052 * 0.02562 * 16 15 13 40 40 H 1.07995 * 120.43673 * 0.05499 * 20 19 17 41 41 H 1.08001 * 120.73838 * 180.24657 * 21 20 19 42 42 H 1.09001 * 109.69163 * 286.80198 * 26 25 23 43 43 H 1.09000 * 109.69420 * 166.22153 * 26 25 23 44 44 H 1.08994 * 109.71361 * 180.46539 * 27 26 25 45 45 H 1.09003 * 109.74814 * 59.85212 * 27 26 25 46 46 H 1.09002 * 109.58312 * 353.37150 * 29 9 7 47 47 H 1.08993 * 109.58721 * 113.65366 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0535 -1.2234 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2756 11 6 0.5006 -3.3037 -2.4297 12 6 0.8185 -4.6890 -1.8624 13 6 2.0742 -4.6092 -0.9912 14 1 2.9080 -4.2391 -1.5877 15 6 2.4101 -6.0007 -0.4508 16 7 3.6765 -5.9466 0.2837 17 6 4.1738 -7.0628 0.8524 18 8 3.5718 -8.1143 0.7553 19 6 5.4519 -7.0081 1.5943 20 6 5.9555 -8.1654 2.1835 21 6 7.1558 -8.1037 2.8724 22 6 7.8092 -6.8808 2.9588 23 6 7.2474 -5.7573 2.3470 24 7 6.1036 -5.8544 1.6955 25 8 7.8741 -4.5521 2.4110 26 6 8.8787 -4.4019 3.4194 27 6 9.7875 -5.6379 3.3837 28 8 8.9816 -6.7938 3.6384 29 6 1.8192 -3.6547 0.1792 30 1 -0.4850 0.8400 0.0004 31 1 0.0985 -1.3255 -1.6684 32 1 -0.6757 -2.6391 -0.7477 33 1 1.3492 -2.9457 -3.0127 34 1 -0.3802 -3.3656 -3.0687 35 1 -0.0206 -5.0357 -1.2592 36 1 0.9891 -5.3868 -2.6822 37 1 1.6159 -6.3321 0.2181 38 1 2.5015 -6.7006 -1.2814 39 1 4.1567 -5.1074 0.3614 40 1 5.4196 -9.0993 2.1007 41 1 7.5722 -8.9858 3.3358 42 1 8.4069 -4.3213 4.3987 43 1 9.4681 -3.5068 3.2203 44 1 10.5575 -5.5504 4.1501 45 1 10.2539 -5.7239 2.4022 46 1 2.7401 -3.5176 0.7461 47 1 1.0480 -4.0678 0.8292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594421802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:48 Heat of formation + Delta-G solvation = -71.406431 kcal Electronic energy + Delta-G solvation = -30432.334355 eV Core-core repulsion = 26194.558066 eV Total energy + Delta-G solvation = -4237.776290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.66357 -41.10209 -39.66434 -39.02737 -38.51909 -36.31985 -34.73765 -33.47642 -32.60479 -32.29845 -31.79938 -29.99734 -27.38287 -27.13028 -26.07486 -25.26393 -23.84667 -23.16301 -22.35092 -21.70736 -20.75336 -19.98027 -19.08357 -18.93776 -18.62301 -18.02518 -17.02829 -16.92477 -16.81727 -16.46068 -16.15191 -15.83576 -15.61364 -15.58145 -15.44353 -15.31190 -15.02934 -14.64578 -14.51193 -14.36769 -14.03877 -13.92503 -13.73918 -13.54302 -13.03007 -12.88126 -12.73051 -12.52327 -12.48807 -12.27353 -12.17640 -11.96332 -11.82374 -11.62828 -11.52706 -11.23195 -11.09291 -10.71880 -10.53683 -10.51875 -10.15057 -9.45095 -8.68422 -7.87269 -5.32786 -0.55948 0.00155 1.45377 1.45719 1.47122 1.56134 1.60946 1.91550 2.11366 2.50659 2.63788 2.87634 3.26564 3.29082 3.45266 3.59303 3.80247 3.87767 3.98231 3.98741 4.01262 4.04860 4.08413 4.17163 4.42032 4.51803 4.55371 4.56909 4.57968 4.61058 4.75011 4.83047 4.88344 4.90691 5.01573 5.11415 5.12805 5.21831 5.33119 5.37519 5.44860 5.48320 5.56921 5.66836 5.79298 5.96392 6.34125 6.39298 6.66190 7.05507 7.15018 7.86181 8.37677 9.18769 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.002925 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.532537 B = 9571.769826 C =11997.958211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.101 4.101 14 H 0.072 0.928 15 C 0.134 3.866 16 N -0.703 5.703 17 C 0.573 3.427 18 O -0.560 6.560 19 C 0.064 3.936 20 C -0.098 4.098 21 C -0.073 4.073 22 C 0.039 3.961 23 C 0.246 3.754 24 N -0.471 5.471 25 O -0.318 6.318 26 C 0.015 3.985 27 C 0.015 3.985 28 O -0.302 6.302 29 C 0.153 3.847 30 H 0.250 0.750 31 H 0.052 0.948 32 H -0.005 1.005 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.413 0.587 40 H 0.174 0.826 41 H 0.190 0.810 42 H 0.086 0.914 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.569 -16.375 5.404 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.122 4.122 14 H 0.090 0.910 15 C 0.011 3.989 16 N -0.353 5.353 17 C 0.359 3.641 18 O -0.440 6.440 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.098 4.098 22 C -0.011 4.011 23 C 0.063 3.937 24 N -0.194 5.194 25 O -0.228 6.228 26 C -0.060 4.060 27 C -0.059 4.059 28 O -0.215 6.215 29 C 0.028 3.972 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.249 0.751 40 H 0.191 0.809 41 H 0.208 0.792 42 H 0.104 0.896 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 19.768 -16.159 4.991 26.015 hybrid contribution 0.571 1.318 0.601 1.557 sum 20.339 -14.841 5.592 25.792 Atomic orbital electron populations 1.70195 1.06653 1.25816 1.55420 1.25774 0.96033 1.01450 1.01286 0.85285 0.78091 0.79571 0.77639 1.21046 1.22083 1.19433 1.19515 0.92909 0.86184 1.40717 0.91805 1.44306 1.35913 1.01976 1.51041 1.20654 0.87570 0.97936 0.89173 1.22005 1.00983 0.95965 0.97988 1.21333 0.96253 0.96824 0.98901 1.21716 0.99236 0.93454 0.97766 0.90962 1.21433 0.84519 0.97013 0.95952 1.45992 1.24269 1.11935 1.53114 1.17876 0.83885 0.83726 0.78641 1.90758 1.60788 1.30415 1.62018 1.20714 0.95662 0.89427 1.01502 1.22100 0.95387 0.99557 0.94860 1.21271 0.93936 0.96338 0.98295 1.20051 0.89351 0.94084 0.97587 1.19497 0.90689 0.85695 0.97863 1.66479 1.06398 1.28377 1.18170 1.86251 1.52176 1.29270 1.55077 1.24196 0.88810 1.01926 0.91083 1.24123 0.92976 0.82259 1.06555 1.86267 1.28284 1.45429 1.61478 1.20985 0.96708 0.85978 0.93566 0.94112 0.92972 0.98726 0.93017 0.90933 0.92267 0.89792 0.91615 0.89950 0.75071 0.80897 0.79244 0.89605 0.82230 0.81495 0.89260 0.93539 0.97394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 11.19 21.65 0.24 -56.29 16 2 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 3 Si 0.97 45.83 29.59 68.60 2.03 47.86 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.92 9.58 84.03 0.81 -14.11 16 8 H 0.06 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -31.50 2.99 -699.15 -2.09 -33.59 16 10 C 0.17 8.51 5.31 86.36 0.46 8.97 16 11 C -0.13 -4.88 6.08 30.67 0.19 -4.69 16 12 C -0.10 -3.00 5.17 30.62 0.16 -2.85 16 13 C -0.10 -3.40 2.37 -10.72 -0.03 -3.42 16 14 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 15 C 0.13 3.97 5.07 86.38 0.44 4.41 16 16 N -0.70 -21.50 5.32 -465.93 -2.48 -23.98 16 17 C 0.57 17.62 7.80 86.80 0.68 18.29 16 18 O -0.56 -18.96 16.31 -3.88 -0.06 -19.03 16 19 C 0.06 1.74 6.74 41.79 0.28 2.02 16 20 C -0.10 -2.00 9.62 22.59 0.22 -1.78 16 21 C -0.07 -1.19 10.08 22.50 0.23 -0.96 16 22 C 0.04 0.75 6.51 22.79 0.15 0.90 16 23 C 0.25 6.20 7.55 85.03 0.64 6.84 16 24 N -0.47 -13.80 9.55 -297.44 -2.84 -16.64 16 25 O -0.32 -7.43 10.51 -81.36 -0.85 -8.29 16 26 C 0.01 0.17 7.24 72.14 0.52 0.69 16 27 C 0.02 0.12 7.26 72.14 0.52 0.64 16 28 O -0.30 -4.44 10.42 -79.10 -0.82 -5.26 16 29 C 0.15 6.57 5.60 86.35 0.48 7.05 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 32 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.41 13.05 7.02 -92.71 -0.65 12.40 16 40 H 0.17 2.99 7.63 -2.91 -0.02 2.97 16 41 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 43 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.05 2.00 7.14 -2.39 -0.02 1.99 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -76.05 382.01 -0.37 -76.43 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.35 Total: 19.23 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.16 Total: 19.56 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -7.17 Total: -130.50 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.74 Total: -32.58 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.05 -0.37 -76.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594421802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.022 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds