Wall clock time and date at job start Wed Apr 1 2020 04:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99890 * 2 1 4 4 H 1.48503 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46769 * 299.99261 * 3 2 1 6 6 H 1.48498 * 109.47604 * 59.99775 * 3 2 1 7 7 C 1.37871 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00533 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46902 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47085 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53916 * 291.62437 * 12 11 10 14 14 O 1.42098 * 110.54479 * 68.37506 * 12 11 10 15 15 N 1.65600 * 104.44669 * 180.02562 * 12 11 10 16 16 C 1.46925 * 120.63131 * 100.57869 * 15 12 11 17 17 C 1.53192 * 108.77299 * 233.58443 * 16 15 12 18 18 C 1.53047 * 109.31094 * 305.36305 * 17 16 15 19 19 C 1.53039 * 109.54063 * 61.36492 * 18 17 16 20 20 C 1.46923 * 120.62900 * 280.29156 * 15 12 11 21 21 H 1.09004 * 109.58720 * 246.20447 * 20 15 12 22 22 C 1.53000 * 109.58618 * 6.62848 * 20 15 12 23 23 C 1.53010 * 109.46871 * 175.89296 * 22 20 15 24 24 C 1.53002 * 109.46821 * 175.88759 * 23 22 20 25 25 C 1.50702 * 109.46902 * 179.97438 * 24 23 22 26 26 O 1.20823 * 120.00098 * 359.97438 * 25 24 23 27 27 O 1.34226 * 119.99927 * 180.02562 * 25 24 23 28 28 H 0.97004 * 119.99636 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46904 * 59.99721 * 9 7 2 30 30 H 1.09007 * 109.46672 * 299.99989 * 9 7 2 31 31 H 1.08997 * 109.47757 * 59.99945 * 10 9 7 32 32 H 1.08995 * 109.46931 * 299.99676 * 10 9 7 33 33 H 1.09000 * 109.46789 * 299.99990 * 11 10 9 34 34 H 1.08997 * 109.46974 * 59.99448 * 11 10 9 35 35 H 1.08997 * 109.58558 * 353.36382 * 16 15 12 36 36 H 1.08995 * 109.59052 * 113.65141 * 16 15 12 37 37 H 1.09001 * 109.50158 * 65.31142 * 17 16 15 38 38 H 1.08994 * 109.49852 * 185.38231 * 17 16 15 39 39 H 1.09004 * 109.45930 * 181.38955 * 18 17 16 40 40 H 1.09006 * 109.45727 * 301.35755 * 18 17 16 41 41 H 1.08998 * 109.49569 * 58.58757 * 19 18 17 42 42 H 1.08990 * 109.49871 * 178.65259 * 19 18 17 43 43 H 1.09001 * 109.47328 * 295.88885 * 22 20 15 44 44 H 1.09001 * 109.47088 * 55.89879 * 22 20 15 45 45 H 1.09001 * 109.46846 * 295.88210 * 23 22 20 46 46 H 1.08991 * 109.47263 * 55.88475 * 23 22 20 47 47 H 1.08993 * 109.47009 * 300.00009 * 24 23 22 48 48 H 1.09004 * 109.47091 * 59.99906 * 24 23 22 49 49 H 0.96695 * 117.00248 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3566 -6.4261 -1.2346 14 8 3.3548 -6.4264 1.2394 15 7 1.7085 -7.7220 0.0004 16 6 1.4703 -8.4678 -1.2428 17 6 -0.0407 -8.6201 -1.4445 18 6 -0.6554 -9.2622 -0.1987 19 6 -0.4186 -8.3580 1.0131 20 6 1.0926 -8.2058 1.2435 21 1 1.5228 -9.1704 1.5132 22 6 1.3432 -7.1972 2.3664 23 6 0.6150 -7.6525 3.6327 24 6 0.9481 -6.7001 4.7829 25 6 0.2304 -7.1482 6.0300 26 8 -0.4755 -8.1283 6.0016 27 8 0.3746 -6.4578 7.1720 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5566 0.8904 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6047 -0.8877 33 1 0.8526 -5.0447 0.8905 34 1 0.8545 -5.0449 -0.8894 35 1 1.8979 -7.9221 -2.0839 36 1 1.9328 -9.4523 -1.1728 37 1 -0.4870 -7.6388 -1.6058 38 1 -0.2300 -9.2529 -2.3115 39 1 -1.7268 -9.3944 -0.3494 40 1 -0.1909 -10.2327 -0.0237 41 1 -0.8613 -7.3792 0.8286 42 1 -0.8773 -8.8043 1.8952 43 1 2.4130 -7.1335 2.5656 44 1 0.9706 -6.2182 2.0652 45 1 -0.4605 -7.6460 3.4556 46 1 0.9343 -8.6617 3.8925 47 1 2.0236 -6.7066 4.9600 48 1 0.6287 -5.6909 4.5230 49 1 -0.1058 -6.7833 7.9455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594675559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:07 Heat of formation + Delta-G solvation = -187.350281 kcal Electronic energy + Delta-G solvation = -29954.867168 eV Core-core repulsion = 25815.214376 eV Total energy + Delta-G solvation = -4139.652792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45124 -39.18392 -37.23907 -36.43068 -35.80087 -34.98470 -34.64944 -32.65416 -32.21872 -31.49355 -27.92401 -27.69766 -24.42403 -24.21584 -23.64560 -21.80308 -20.90571 -20.80919 -20.10450 -18.77377 -18.27868 -17.45141 -16.71994 -16.63779 -16.35431 -16.26889 -15.70980 -15.12166 -14.92060 -14.76179 -14.49285 -14.39560 -14.18863 -13.91360 -13.66978 -13.49473 -12.86702 -12.64605 -12.48458 -12.34589 -12.16350 -11.98073 -11.85340 -11.79759 -11.78639 -11.69599 -11.45308 -11.31886 -11.23674 -11.06714 -10.94891 -10.88577 -10.83051 -10.70098 -10.58352 -10.41992 -10.04506 -9.95880 -9.48618 -9.21865 -8.89932 -8.43076 -6.07791 -4.10835 0.42677 2.01677 2.65698 2.88559 3.27908 3.35685 3.40376 3.93680 4.22926 4.27163 4.40791 4.53299 4.64993 4.72476 4.74538 4.86333 4.90884 5.00986 5.12635 5.14830 5.18278 5.19120 5.28890 5.36935 5.41792 5.48401 5.56308 5.58405 5.62193 5.74620 5.78440 5.85138 5.87708 5.90036 6.02306 6.08870 6.18837 6.23526 6.29847 6.37809 6.45361 6.56935 6.84540 7.54724 7.64218 7.68779 7.90262 8.30644 8.95653 9.54200 11.03395 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007489 B = 0.003622 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.157473 B = 7728.534162 C =10199.572748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.613 4.613 12 S 2.597 3.403 13 O -0.963 6.963 14 O -0.957 6.957 15 N -1.000 6.000 16 C 0.119 3.881 17 C -0.137 4.137 18 C -0.116 4.116 19 C -0.137 4.137 20 C 0.164 3.836 21 H 0.079 0.921 22 C -0.192 4.192 23 C -0.098 4.098 24 C -0.119 4.119 25 C 0.480 3.520 26 O -0.521 6.521 27 O -0.517 6.517 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.137 0.863 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -20.397 5.606 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.144 4.144 11 C -0.744 4.744 12 S 2.696 3.304 13 O -0.954 6.954 14 O -0.947 6.947 15 N -0.837 5.837 16 C -0.006 4.006 17 C -0.176 4.176 18 C -0.154 4.154 19 C -0.175 4.175 20 C 0.058 3.942 21 H 0.097 0.903 22 C -0.230 4.230 23 C -0.136 4.136 24 C -0.157 4.157 25 C 0.323 3.677 26 O -0.410 6.410 27 O -0.329 6.329 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.846 -20.444 5.223 21.117 hybrid contribution -0.840 0.995 0.498 1.394 sum -1.686 -19.449 5.721 20.343 Atomic orbital electron populations 1.69971 1.06088 1.26664 1.50683 1.25013 0.94870 0.99356 0.95088 0.86515 0.80218 0.83551 0.77636 1.19580 1.20943 1.20934 1.21287 0.93279 0.90870 1.50943 0.92330 1.19059 0.93506 0.90465 0.97695 1.21495 0.99341 0.91685 1.01889 1.30776 1.16417 1.16025 1.11228 1.05441 0.75990 0.74993 0.74012 1.93536 1.70567 1.85904 1.45372 1.93463 1.71515 1.85729 1.43979 1.57894 1.68716 1.43164 1.13942 1.21419 0.96063 0.97282 0.85820 1.21949 0.95647 1.01864 0.98185 1.21465 1.00591 0.98699 0.94642 1.22157 0.95669 1.01035 0.98683 1.20984 0.92945 0.98116 0.82143 0.90260 1.23080 1.06722 0.98454 0.94705 1.21319 1.01386 0.98830 0.92057 1.21456 1.02299 1.02752 0.89148 1.23669 0.78828 0.80246 0.84920 1.90711 1.37899 1.26839 1.85520 1.84576 1.69439 1.57595 1.21298 0.92959 0.96172 0.96150 0.91573 0.91710 0.85300 0.85496 0.88654 0.91325 0.91249 0.90869 0.91823 0.91929 0.91073 0.90484 0.84551 0.91052 0.90665 0.90671 0.86975 0.86993 0.73340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.10 -2.07 5.16 -26.73 -0.14 -2.20 16 11 C -0.61 -9.25 5.93 37.16 0.22 -9.03 16 12 S 2.60 37.67 4.84 -107.50 -0.52 37.15 16 13 O -0.96 -16.76 16.41 -57.54 -0.94 -17.71 16 14 O -0.96 -15.16 14.02 -57.54 -0.81 -15.97 16 15 N -1.00 -11.26 3.21 -106.24 -0.34 -11.60 16 16 C 0.12 1.17 6.38 -3.71 -0.02 1.15 16 17 C -0.14 -1.12 6.08 -26.61 -0.16 -1.29 16 18 C -0.12 -0.89 5.88 -26.69 -0.16 -1.05 16 19 C -0.14 -1.16 4.77 -26.39 -0.13 -1.28 16 20 C 0.16 1.59 3.04 -67.38 -0.20 1.39 16 21 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 22 C -0.19 -1.97 3.38 -26.73 -0.09 -2.06 16 23 C -0.10 -0.88 3.95 -26.73 -0.11 -0.99 16 24 C -0.12 -1.06 5.81 -27.88 -0.16 -1.22 16 25 C 0.48 4.79 8.33 36.01 0.30 5.09 16 26 O -0.52 -6.56 16.74 -18.75 -0.31 -6.88 16 27 O -0.52 -4.26 13.42 -39.25 -0.53 -4.79 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.13 1.72 5.76 -51.92 -0.30 1.42 16 34 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.10 1.00 6.80 -51.93 -0.35 0.65 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.59 6.83 -51.93 -0.35 0.24 16 43 H 0.14 1.62 5.31 -52.23 -0.28 1.34 16 44 H 0.07 0.75 5.06 -51.93 -0.26 0.49 16 45 H 0.07 0.68 6.71 -51.93 -0.35 0.33 16 46 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.41 1.64 9.10 45.56 0.41 2.06 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -35.48 394.73 -10.35 -45.83 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.36 Total: 1.44 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.20 Total: -24.22 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.40 Total: -37.11 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -2.59 Total: -45.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 37.67 SS G_CDS: -0.52 Total: 37.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.48 -10.35 -45.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594675559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.525 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds