Wall clock time and date at job start Wed Apr 1 2020 04:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99890 * 2 1 4 4 H 1.48503 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46769 * 299.99261 * 3 2 1 6 6 H 1.48498 * 109.47604 * 59.99775 * 3 2 1 7 7 C 1.37871 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00533 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46902 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47085 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53916 * 291.62437 * 12 11 10 14 14 O 1.42098 * 110.54479 * 68.37506 * 12 11 10 15 15 N 1.65600 * 104.44669 * 180.02562 * 12 11 10 16 16 C 1.46925 * 120.63131 * 100.57869 * 15 12 11 17 17 C 1.53192 * 108.77299 * 233.58443 * 16 15 12 18 18 C 1.53047 * 109.31094 * 305.36305 * 17 16 15 19 19 C 1.53039 * 109.54063 * 61.36492 * 18 17 16 20 20 C 1.46923 * 120.62900 * 280.29156 * 15 12 11 21 21 H 1.09004 * 109.58720 * 246.20447 * 20 15 12 22 22 C 1.53000 * 109.58618 * 6.62848 * 20 15 12 23 23 C 1.53010 * 109.46871 * 175.89296 * 22 20 15 24 24 C 1.53002 * 109.46821 * 175.88759 * 23 22 20 25 25 C 1.50702 * 109.46902 * 179.97438 * 24 23 22 26 26 O 1.20823 * 120.00098 * 359.97438 * 25 24 23 27 27 O 1.34226 * 119.99927 * 180.02562 * 25 24 23 28 28 H 0.97004 * 119.99636 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46904 * 59.99721 * 9 7 2 30 30 H 1.09007 * 109.46672 * 299.99989 * 9 7 2 31 31 H 1.08997 * 109.47757 * 59.99945 * 10 9 7 32 32 H 1.08995 * 109.46931 * 299.99676 * 10 9 7 33 33 H 1.09000 * 109.46789 * 299.99990 * 11 10 9 34 34 H 1.08997 * 109.46974 * 59.99448 * 11 10 9 35 35 H 1.08997 * 109.58558 * 353.36382 * 16 15 12 36 36 H 1.08995 * 109.59052 * 113.65141 * 16 15 12 37 37 H 1.09001 * 109.50158 * 65.31142 * 17 16 15 38 38 H 1.08994 * 109.49852 * 185.38231 * 17 16 15 39 39 H 1.09004 * 109.45930 * 181.38955 * 18 17 16 40 40 H 1.09006 * 109.45727 * 301.35755 * 18 17 16 41 41 H 1.08998 * 109.49569 * 58.58757 * 19 18 17 42 42 H 1.08990 * 109.49871 * 178.65259 * 19 18 17 43 43 H 1.09001 * 109.47328 * 295.88885 * 22 20 15 44 44 H 1.09001 * 109.47088 * 55.89879 * 22 20 15 45 45 H 1.09001 * 109.46846 * 295.88210 * 23 22 20 46 46 H 1.08991 * 109.47263 * 55.88475 * 23 22 20 47 47 H 1.08993 * 109.47009 * 300.00009 * 24 23 22 48 48 H 1.09004 * 109.47091 * 59.99906 * 24 23 22 49 49 H 0.96695 * 117.00248 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3566 -6.4261 -1.2346 14 8 3.3548 -6.4264 1.2394 15 7 1.7085 -7.7220 0.0004 16 6 1.4703 -8.4678 -1.2428 17 6 -0.0407 -8.6201 -1.4445 18 6 -0.6554 -9.2622 -0.1987 19 6 -0.4186 -8.3580 1.0131 20 6 1.0926 -8.2058 1.2435 21 1 1.5228 -9.1704 1.5132 22 6 1.3432 -7.1972 2.3664 23 6 0.6150 -7.6525 3.6327 24 6 0.9481 -6.7001 4.7829 25 6 0.2304 -7.1482 6.0300 26 8 -0.4755 -8.1283 6.0016 27 8 0.3746 -6.4578 7.1720 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5566 0.8904 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6047 -0.8877 33 1 0.8526 -5.0447 0.8905 34 1 0.8545 -5.0449 -0.8894 35 1 1.8979 -7.9221 -2.0839 36 1 1.9328 -9.4523 -1.1728 37 1 -0.4870 -7.6388 -1.6058 38 1 -0.2300 -9.2529 -2.3115 39 1 -1.7268 -9.3944 -0.3494 40 1 -0.1909 -10.2327 -0.0237 41 1 -0.8613 -7.3792 0.8286 42 1 -0.8773 -8.8043 1.8952 43 1 2.4130 -7.1335 2.5656 44 1 0.9706 -6.2182 2.0652 45 1 -0.4605 -7.6460 3.4556 46 1 0.9343 -8.6617 3.8925 47 1 2.0236 -6.7066 4.9600 48 1 0.6287 -5.6909 4.5230 49 1 -0.1058 -6.7833 7.9455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594675559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:06 Heat of formation + Delta-G solvation = -211.139472 kcal Electronic energy + Delta-G solvation = -29955.898744 eV Core-core repulsion = 25815.214376 eV Total energy + Delta-G solvation = -4140.684369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22156 -39.96659 -38.42086 -37.17724 -37.05173 -36.49021 -35.70799 -34.16565 -33.42330 -32.23674 -29.68663 -28.50157 -25.77091 -25.00543 -24.89411 -22.75482 -22.21765 -21.55237 -21.12423 -19.83416 -19.04356 -18.69784 -18.30866 -17.59234 -17.32690 -17.17078 -16.99783 -16.48125 -16.08980 -15.92541 -15.52834 -15.42135 -15.11059 -14.65362 -14.53855 -14.40115 -14.24359 -14.08890 -13.76973 -13.41204 -13.37162 -13.17936 -13.01292 -12.97539 -12.82273 -12.71963 -12.61680 -12.55905 -12.48142 -12.25933 -12.10710 -12.00918 -11.82827 -11.66601 -11.60239 -11.46138 -11.35453 -11.31084 -11.11781 -10.81548 -10.57566 -9.85594 -8.22328 -6.33123 -0.74930 1.24888 1.39867 1.40950 1.53856 1.64600 2.21233 2.40191 2.76979 3.11491 3.14699 3.42583 3.70291 3.79924 3.86425 3.97196 4.06685 4.09414 4.19346 4.23451 4.30596 4.40071 4.44382 4.48213 4.59728 4.65590 4.73040 4.79136 4.84611 4.89283 4.92894 4.97367 5.06423 5.08390 5.10088 5.20954 5.28299 5.31439 5.35945 5.46024 5.54969 5.55683 5.62959 5.66348 5.75020 5.79844 6.20095 6.82627 7.03538 7.36446 8.89262 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007489 B = 0.003622 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.157473 B = 7728.534162 C =10199.572748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.103 4.103 11 C -0.615 4.615 12 S 2.617 3.383 13 O -0.993 6.993 14 O -0.970 6.970 15 N -0.993 5.993 16 C 0.111 3.889 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.136 4.136 20 C 0.161 3.839 21 H 0.094 0.906 22 C -0.193 4.193 23 C -0.091 4.091 24 C -0.123 4.123 25 C 0.486 3.514 26 O -0.551 6.551 27 O -0.518 6.518 28 H 0.264 0.736 29 H -0.001 1.001 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.115 0.885 49 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -21.390 5.981 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.588 4.588 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.142 4.142 11 C -0.745 4.745 12 S 2.715 3.285 13 O -0.983 6.983 14 O -0.960 6.960 15 N -0.832 5.832 16 C -0.014 4.014 17 C -0.175 4.175 18 C -0.152 4.152 19 C -0.174 4.174 20 C 0.056 3.944 21 H 0.111 0.889 22 C -0.231 4.231 23 C -0.129 4.129 24 C -0.161 4.161 25 C 0.330 3.670 26 O -0.442 6.442 27 O -0.331 6.331 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.140 0.860 48 H 0.133 0.867 49 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.778 -21.420 5.614 22.157 hybrid contribution -0.888 1.253 0.429 1.595 sum -1.666 -20.167 6.043 21.119 Atomic orbital electron populations 1.70081 1.07618 1.27776 1.51487 1.25903 0.95764 1.03130 0.94587 0.85458 0.79142 0.78961 0.77887 1.18738 1.20352 1.20179 1.21757 0.93714 0.92464 1.50878 0.92182 1.18948 0.93965 0.91816 0.95847 1.21290 0.98578 0.92347 1.01989 1.30769 1.16776 1.14256 1.12685 1.04649 0.75726 0.75121 0.72986 1.93495 1.71592 1.86460 1.46760 1.93466 1.72216 1.86015 1.44305 1.57671 1.68511 1.41701 1.15294 1.21651 0.97492 0.97559 0.84649 1.21960 0.94208 1.01980 0.99333 1.21476 1.01232 0.98792 0.93731 1.22164 0.94456 1.01110 0.99714 1.21183 0.93897 0.98308 0.81060 0.88853 1.23037 1.05886 0.98530 0.95642 1.21247 1.01235 0.99022 0.91407 1.21528 1.02844 1.02817 0.88877 1.23771 0.78126 0.79658 0.85433 1.90699 1.39289 1.28150 1.86050 1.84540 1.69563 1.57320 1.21712 0.92680 0.98219 0.97681 0.91162 0.92035 0.83671 0.84476 0.89659 0.89602 0.92069 0.89041 0.90927 0.90889 0.91768 0.89373 0.85943 0.91590 0.90513 0.90209 0.86017 0.86721 0.71274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.10 -4.12 5.16 30.60 0.16 -3.96 16 11 C -0.61 -18.53 5.93 71.98 0.43 -18.10 16 12 S 2.62 74.71 4.84 -56.49 -0.27 74.44 16 13 O -0.99 -34.38 16.41 -127.65 -2.09 -36.47 16 14 O -0.97 -30.25 14.02 -127.65 -1.79 -32.04 16 15 N -0.99 -21.02 3.21 -490.03 -1.57 -22.60 16 16 C 0.11 1.99 6.38 86.36 0.55 2.54 16 17 C -0.14 -1.93 6.08 30.67 0.19 -1.75 16 18 C -0.11 -1.46 5.88 30.62 0.18 -1.28 16 19 C -0.14 -2.01 4.77 30.82 0.15 -1.87 16 20 C 0.16 2.83 3.04 45.12 0.14 2.97 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 C -0.19 -3.76 3.38 30.60 0.10 -3.65 16 23 C -0.09 -1.53 3.95 30.60 0.12 -1.41 16 24 C -0.12 -2.07 5.81 29.85 0.17 -1.90 16 25 C 0.49 9.17 8.33 71.24 0.59 9.77 16 26 O -0.55 -13.37 16.74 21.97 0.37 -13.01 16 27 O -0.52 -7.84 13.42 -51.37 -0.69 -8.52 16 28 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.15 3.84 5.76 -2.39 -0.01 3.83 16 34 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.09 1.72 6.80 -2.39 -0.02 1.71 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.14 6.83 -2.39 -0.02 1.12 16 43 H 0.12 2.80 5.31 -7.18 -0.04 2.76 16 44 H 0.07 1.34 5.06 -2.39 -0.01 1.33 16 45 H 0.08 1.27 6.71 -2.39 -0.02 1.26 16 46 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 47 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.43 2.83 9.10 -74.06 -0.67 2.16 16 Total: -1.00 -75.76 394.73 0.13 -75.63 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.25 Total: 18.57 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 3.62 Total: -46.83 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.29 Total: -77.54 kcal Atomic # 8 Polarization: -85.84 SS G_CDS: -4.21 Total: -90.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 74.71 SS G_CDS: -0.27 Total: 74.44 kcal Total: -75.76 0.13 -75.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594675559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.513 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds