Wall clock time and date at job start Wed Apr 1 2020 04:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46900 * 111.00009 * 294.29431 * 10 9 7 12 12 C 1.53239 * 109.33901 * 172.75075 * 11 10 9 13 13 N 1.47077 * 108.52401 * 53.83519 * 12 11 10 14 14 C 1.34776 * 120.88347 * 128.83777 * 13 12 11 15 15 O 1.21279 * 119.99711 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99888 * 359.97438 * 14 13 12 17 17 C 1.52997 * 109.47202 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47627 * 179.97438 * 17 16 14 19 19 C 1.38251 * 119.99789 * 269.73249 * 18 17 16 20 20 C 1.38217 * 119.99493 * 179.78598 * 19 18 17 21 21 C 1.38260 * 119.99927 * 0.45784 * 20 19 18 22 22 C 1.38209 * 120.00239 * 359.76976 * 21 20 19 23 23 N 1.48017 * 120.00073 * 179.97438 * 22 21 20 24 24 O 1.21801 * 120.00055 * 180.02562 * 23 22 21 25 25 O 1.21794 * 120.00039 * 0.02562 * 23 22 21 26 26 C 1.38215 * 119.99677 * 89.99879 * 18 17 16 27 27 C 1.47087 * 118.23490 * 308.81496 * 13 12 11 28 28 C 1.46905 * 110.99974 * 170.00187 * 10 9 7 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09001 * 109.49699 * 292.71058 * 11 10 9 33 33 H 1.09003 * 109.48977 * 52.79405 * 11 10 9 34 34 H 1.09005 * 109.62810 * 294.12178 * 12 11 10 35 35 H 1.08998 * 109.62826 * 173.54600 * 12 11 10 36 36 H 1.09005 * 109.47477 * 300.00289 * 16 14 13 37 37 H 1.08997 * 109.47013 * 59.99994 * 16 14 13 38 38 H 1.08998 * 109.47391 * 300.00263 * 17 16 14 39 39 H 1.09006 * 109.47023 * 59.99935 * 17 16 14 40 40 H 1.08001 * 120.00766 * 359.97438 * 19 18 17 41 41 H 1.08004 * 120.00262 * 180.25135 * 20 19 18 42 42 H 1.08000 * 119.99557 * 179.79114 * 21 20 19 43 43 H 1.07995 * 120.00053 * 359.97438 * 26 18 17 44 44 H 1.08999 * 109.62348 * 291.47442 * 27 13 12 45 45 H 1.08990 * 109.78576 * 170.98799 * 27 13 12 46 46 H 1.09003 * 109.48745 * 307.20965 * 28 10 9 47 47 H 1.08999 * 109.49183 * 67.28681 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 2.9766 -3.6436 -1.2603 12 6 4.0788 -4.7028 -1.1531 13 7 3.4613 -5.9830 -0.7747 14 6 3.7120 -7.1061 -1.4763 15 8 3.1946 -8.1532 -1.1497 16 6 4.6353 -7.0607 -2.6665 17 6 4.7468 -8.4583 -3.2790 18 6 5.6696 -8.4129 -4.4696 19 6 5.1603 -8.1594 -5.7296 20 6 6.0073 -8.1133 -6.8209 21 6 7.3625 -8.3302 -6.6538 22 6 7.8710 -8.5883 -5.3948 23 7 9.3217 -8.8210 -5.2160 24 8 9.7698 -9.0489 -4.1066 25 8 10.0675 -8.7846 -6.1782 26 6 7.0243 -8.6301 -4.3026 27 6 2.5634 -6.0051 0.3901 28 6 1.5210 -4.8946 0.2221 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.3147 -3.8901 -2.0906 33 1 3.4271 -2.6659 -1.4316 34 1 4.8001 -4.4050 -0.3921 35 1 4.5800 -4.8083 -2.1153 36 1 4.2369 -6.3696 -3.4093 37 1 5.6217 -6.7232 -2.3484 38 1 5.1450 -9.1497 -2.5364 39 1 3.7602 -8.7954 -3.5971 40 1 4.1010 -7.9943 -5.8608 41 1 5.6100 -7.9113 -7.8047 42 1 8.0238 -8.2976 -7.5070 43 1 7.4216 -8.8320 -3.3188 44 1 3.1391 -5.8325 1.2994 45 1 2.0626 -6.9712 0.4516 46 1 0.9158 -4.8242 1.1259 47 1 0.8794 -5.1236 -0.6288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:38 Heat of formation + Delta-G solvation = -28.895616 kcal Electronic energy + Delta-G solvation = -29471.442845 eV Core-core repulsion = 25235.509963 eV Total energy + Delta-G solvation = -4235.932882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.26041 -41.33390 -40.51080 -39.00852 -37.70333 -35.97411 -35.38279 -34.40014 -32.88343 -32.39997 -31.05076 -29.92424 -27.67057 -27.43864 -25.87725 -24.59855 -23.79755 -23.58148 -22.58841 -21.78148 -19.94534 -19.79088 -19.68381 -18.61428 -18.49875 -18.20367 -17.51313 -17.03458 -16.93844 -16.67466 -16.31633 -16.01021 -15.56837 -15.46758 -15.29088 -14.92773 -14.74964 -14.44086 -14.16532 -14.03484 -13.81664 -13.51949 -13.19550 -13.13167 -12.95486 -12.76084 -12.75590 -12.61563 -12.46020 -12.39217 -12.33355 -12.29437 -12.25801 -12.09755 -11.98636 -11.77204 -11.27266 -10.87445 -10.63054 -10.54886 -10.14782 -9.76596 -9.05738 -8.20945 -6.31055 -1.24835 -0.04926 0.30655 0.37998 1.42405 1.44242 1.56678 1.59829 1.95161 2.31763 2.40556 3.11982 3.19878 3.24343 3.48658 3.58474 3.81264 3.87946 3.95548 3.96969 4.02630 4.07834 4.15603 4.23515 4.26155 4.31988 4.44185 4.48076 4.63936 4.69349 4.70755 4.73839 4.84947 4.88334 4.94537 5.02283 5.03091 5.10405 5.14088 5.19659 5.23277 5.29699 5.44685 5.53947 5.63782 6.02156 6.23357 6.43829 6.44574 6.56076 6.85408 7.11939 7.39154 8.90474 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.002016 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.478432 B =13887.612875 C =14937.330365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.541 5.541 11 C 0.048 3.952 12 C 0.119 3.881 13 N -0.613 5.613 14 C 0.512 3.488 15 O -0.584 6.584 16 C -0.131 4.131 17 C -0.059 4.059 18 C -0.076 4.076 19 C -0.052 4.052 20 C -0.103 4.103 21 C -0.062 4.062 22 C -0.063 4.063 23 N 0.030 4.970 24 O -0.194 6.194 25 O -0.176 6.176 26 C -0.059 4.059 27 C 0.126 3.874 28 C 0.044 3.956 29 H 0.264 0.736 30 H 0.003 0.997 31 H -0.039 1.039 32 H 0.019 0.981 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.171 0.829 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.150 0.850 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.869 -17.045 -14.492 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.081 4.081 12 C -0.003 4.003 13 N -0.345 5.345 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.170 4.170 17 C -0.097 4.097 18 C -0.076 4.076 19 C -0.070 4.070 20 C -0.121 4.121 21 C -0.081 4.081 22 C -0.146 4.146 23 N 0.544 4.456 24 O -0.404 6.404 25 O -0.391 6.391 26 C -0.078 4.078 27 C 0.003 3.997 28 C -0.085 4.085 29 H 0.072 0.928 30 H 0.021 0.979 31 H -0.022 1.022 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.188 0.812 41 H 0.199 0.801 42 H 0.179 0.821 43 H 0.168 0.832 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 11.121 -17.305 -13.984 24.873 hybrid contribution -0.266 0.884 -0.117 0.930 sum 10.855 -16.421 -14.101 24.214 Atomic orbital electron populations 1.70101 1.07857 1.27825 1.51888 1.25934 0.95688 1.03299 0.94886 0.85326 0.79212 0.78544 0.77483 1.18207 1.20599 1.20906 1.21477 0.93808 0.90639 1.49772 0.91218 1.19376 0.90108 0.88956 0.93408 1.62002 1.27048 1.02458 1.35071 1.22398 0.95730 1.00189 0.89787 1.22031 0.94546 0.80707 1.03003 1.48349 1.46723 1.09422 1.30048 1.21222 0.81810 0.82284 0.84427 1.90670 1.53941 1.31064 1.70792 1.21750 1.00401 0.99741 0.95144 1.20300 0.99235 0.96194 0.93971 1.19869 0.91794 0.99543 0.96436 1.22015 1.02737 0.91368 0.90870 1.21632 0.90474 0.98271 1.01750 1.21395 0.97926 0.93910 0.94833 1.21317 0.78409 1.16259 0.98630 1.44049 1.04678 0.96914 0.99965 1.94545 1.80651 1.53011 1.12202 1.94505 1.57101 1.55274 1.32222 1.21055 0.93009 0.95251 0.98456 1.21559 0.91412 0.98171 0.88541 1.22421 0.95655 0.90077 1.00370 0.92768 0.97899 1.02173 0.96321 0.89631 0.89924 0.86076 0.86345 0.86817 0.90332 0.89091 0.81186 0.80081 0.82078 0.83233 0.90377 0.89216 0.90415 0.96531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.75 13.29 21.45 0.28 -54.46 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 42.22 29.54 68.60 2.03 44.24 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.52 -27.65 8.41 25.60 0.22 -27.44 16 8 H 0.07 3.57 7.13 -2.91 -0.02 3.55 16 9 C 0.21 10.55 4.72 85.56 0.40 10.95 16 10 N -0.54 -21.49 4.62 -899.82 -4.16 -25.64 16 11 C 0.05 1.56 5.46 86.38 0.47 2.03 16 12 C 0.12 2.69 6.50 86.35 0.56 3.25 16 13 N -0.61 -15.20 3.01 -817.95 -2.46 -17.67 16 14 C 0.51 11.66 7.71 87.66 0.68 12.34 16 15 O -0.58 -17.33 15.44 -3.03 -0.05 -17.38 16 16 C -0.13 -1.69 4.05 29.85 0.12 -1.57 16 17 C -0.06 -0.70 4.63 29.85 0.14 -0.57 16 18 C -0.08 -0.73 5.13 -19.87 -0.10 -0.84 16 19 C -0.05 -0.29 9.70 22.27 0.22 -0.08 16 20 C -0.10 -0.50 10.05 22.27 0.22 -0.28 16 21 C -0.06 -0.62 9.56 22.27 0.21 -0.41 16 22 C -0.06 -1.00 6.85 36.37 0.25 -0.75 16 23 N 0.03 0.68 4.45 -46.47 -0.21 0.47 16 24 O -0.19 -4.88 18.45 18.89 0.35 -4.53 16 25 O -0.18 -4.13 18.45 18.89 0.35 -3.78 16 26 C -0.06 -0.79 9.21 22.27 0.21 -0.58 16 27 C 0.13 3.56 6.59 86.35 0.57 4.12 16 28 C 0.04 1.50 5.62 86.38 0.49 1.99 16 29 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.00 0.16 7.97 -2.38 -0.02 0.14 16 31 H -0.04 -2.20 8.12 -2.39 -0.02 -2.22 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 3.00 6.67 -2.39 -0.02 2.99 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.12 1.75 6.02 -2.39 -0.01 1.73 16 36 H 0.12 1.09 7.66 -2.38 -0.02 1.07 16 37 H 0.11 1.14 8.00 -2.39 -0.02 1.13 16 38 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 39 H 0.09 1.11 8.04 -2.38 -0.02 1.09 16 40 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 41 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16 42 H 0.16 1.29 7.61 -2.91 -0.02 1.27 16 43 H 0.15 2.05 7.61 -2.91 -0.02 2.02 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.09 2.53 7.07 -2.39 -0.02 2.51 16 46 H 0.08 2.67 7.99 -2.39 -0.02 2.65 16 47 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -73.27 393.14 2.22 -71.05 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.98 Total: 5.07 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.11 Total: 2.63 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -6.54 Total: -97.31 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.65 Total: -25.69 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -73.27 2.22 -71.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.155 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds