Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48499 * 109.46874 * 274.99687 * 3 2 1 5 5 H 1.48500 * 109.46926 * 34.99142 * 3 2 1 6 6 H 1.48499 * 109.47052 * 154.99328 * 3 2 1 7 7 C 1.38948 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00072 * 211.56771 * 7 2 1 9 9 N 1.37096 * 120.00294 * 31.57142 * 7 2 1 10 10 C 1.46513 * 119.99716 * 8.71802 * 9 7 2 11 11 C 1.50701 * 109.46890 * 263.85841 * 10 9 7 12 12 O 1.20825 * 119.99842 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00827 * 188.71937 * 9 7 2 15 15 O 1.21297 * 120.00806 * 183.28086 * 14 9 7 16 16 C 1.50704 * 119.99669 * 3.27599 * 14 9 7 17 17 H 1.09002 * 109.53761 * 306.45082 * 16 14 9 18 18 C 1.53131 * 109.49991 * 66.50660 * 16 14 9 19 19 C 1.53125 * 109.15317 * 177.55694 * 18 16 14 20 20 C 1.53039 * 109.31159 * 302.40361 * 19 18 16 21 21 N 1.46848 * 109.52299 * 59.16360 * 20 19 18 22 22 C 1.46895 * 110.99814 * 174.16194 * 21 20 19 23 23 C 1.50704 * 109.47195 * 293.95144 * 22 21 20 24 24 C 1.38675 * 120.41839 * 269.72745 * 23 22 21 25 25 C 1.38623 * 118.41873 * 179.77920 * 24 23 22 26 26 C 1.38233 * 119.16208 * 0.47225 * 25 24 23 27 27 N 1.31851 * 120.76264 * 359.76564 * 26 25 24 28 28 C 1.31887 * 121.72628 * 0.02562 * 27 26 25 29 29 C 1.46850 * 111.19452 * 298.25955 * 21 20 19 30 30 H 0.96998 * 119.99775 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46868 * 23.85628 * 10 9 7 32 32 H 1.08999 * 109.46937 * 143.85541 * 10 9 7 33 33 H 0.96704 * 116.99694 * 179.97438 * 13 11 10 34 34 H 1.09003 * 109.48977 * 57.67408 * 18 16 14 35 35 H 1.08992 * 109.55768 * 297.47945 * 18 16 14 36 36 H 1.09008 * 109.49888 * 182.44788 * 19 18 16 37 37 H 1.08994 * 109.50259 * 62.36798 * 19 18 16 38 38 H 1.08997 * 109.46295 * 179.18089 * 20 19 18 39 39 H 1.09003 * 109.46299 * 299.14825 * 20 19 18 40 40 H 1.08997 * 109.47551 * 53.95586 * 22 21 20 41 41 H 1.08997 * 109.46975 * 173.95398 * 22 21 20 42 42 H 1.07999 * 120.78926 * 0.02562 * 24 23 22 43 43 H 1.08005 * 120.41942 * 180.21527 * 25 24 23 44 44 H 1.07997 * 119.61390 * 179.79274 * 26 25 24 45 45 H 1.07999 * 119.62119 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.45754 * 181.76472 * 29 21 20 47 47 H 1.09005 * 109.46417 * 301.72971 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3900 2.1073 -1.3948 5 1 1.5023 2.6199 0.8029 6 1 3.5945 1.4119 0.5918 7 6 2.0088 -1.2033 0.0005 8 1 2.9690 -1.2724 0.4902 9 7 1.4755 -2.3031 -0.6206 10 6 0.2720 -2.1670 -1.4450 11 6 -0.9416 -2.5194 -0.6240 12 8 -0.8143 -2.8506 0.5310 13 8 -2.1640 -2.4652 -1.1759 14 6 2.0582 -3.5093 -0.4729 15 8 1.6219 -4.4709 -1.0697 16 6 3.2522 -3.6633 0.4337 17 1 4.0184 -2.9406 0.1534 18 6 2.8272 -3.4198 1.8845 19 6 4.0318 -3.6380 2.8043 20 6 4.5712 -5.0561 2.6040 21 7 4.9648 -5.2378 1.2010 22 6 5.6150 -6.5398 1.0011 23 6 6.9241 -6.5673 1.7471 24 6 8.0946 -6.1575 1.1266 25 6 9.2747 -6.1955 1.8530 26 6 9.2472 -6.6467 3.1594 27 7 8.1161 -7.0333 3.7157 28 6 6.9742 -7.0068 3.0562 29 6 3.8141 -5.0806 0.3022 30 1 -0.4850 0.8400 -0.0004 31 1 0.1868 -1.1388 -1.7966 32 1 0.3397 -2.8392 -2.3004 33 1 -2.9120 -2.7006 -0.6100 34 1 2.0330 -4.1166 2.1527 35 1 2.4671 -2.3967 1.9924 36 1 3.7251 -3.5085 3.8424 37 1 4.8104 -2.9148 2.5620 38 1 5.4378 -5.2092 3.2471 39 1 3.7966 -5.7789 2.8605 40 1 4.9663 -7.3313 1.3762 41 1 5.7994 -6.6944 -0.0620 42 1 8.0864 -5.8132 0.1030 43 1 10.2045 -5.8805 1.4027 44 1 10.1629 -6.6825 3.7309 45 1 6.0678 -7.3318 3.5451 46 1 4.1310 -5.2517 -0.7266 47 1 3.0430 -5.8032 0.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = -75.301131 kcal Electronic energy + Delta-G solvation = -31358.545505 eV Core-core repulsion = 27120.600328 eV Total energy + Delta-G solvation = -4237.945177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.43736 -39.65958 -38.80623 -37.57668 -35.22701 -34.64091 -34.18193 -32.33428 -31.68695 -31.16344 -30.62124 -27.85702 -26.46896 -25.02044 -23.87965 -23.27242 -22.90108 -21.62591 -20.84648 -19.59514 -18.98303 -17.28795 -17.10710 -16.99101 -16.44283 -16.32322 -15.70648 -15.49001 -15.41180 -14.63341 -14.48056 -14.38518 -14.29623 -13.96970 -13.87666 -13.69575 -13.42809 -13.15820 -12.97441 -12.66125 -12.56531 -12.20790 -11.84471 -11.80551 -11.64100 -11.55918 -11.51241 -11.02534 -10.98012 -10.53664 -10.47132 -10.41495 -10.28400 -10.08518 -10.00060 -9.79691 -9.64674 -9.56023 -9.14045 -9.05304 -8.52652 -8.14797 -8.07972 -6.62523 -3.95999 0.95467 1.17613 3.04217 3.18180 3.20448 3.51833 3.58358 3.61798 3.96645 4.13486 4.25114 4.30535 4.62654 4.68188 4.72777 4.88154 4.89939 4.92905 5.16652 5.23663 5.33061 5.39676 5.51119 5.59474 5.64306 5.68843 5.77978 5.89107 5.97623 5.99241 6.14360 6.15955 6.20575 6.25323 6.35260 6.41831 6.47326 6.53052 6.55858 6.61358 6.85928 7.00999 7.21359 7.26890 7.34950 7.46855 7.53942 7.82976 8.17549 8.92236 9.07671 9.32090 9.72921 10.45464 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002897 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.718788 B = 9662.157221 C =10618.217160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.913 3.087 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.341 4.341 8 H 0.112 0.888 9 N -0.425 5.425 10 C 0.149 3.851 11 C 0.494 3.506 12 O -0.509 6.509 13 O -0.534 6.534 14 C 0.473 3.527 15 O -0.607 6.607 16 C -0.077 4.077 17 H 0.093 0.907 18 C -0.111 4.111 19 C -0.113 4.113 20 C 0.052 3.948 21 N -0.534 5.534 22 C 0.096 3.904 23 C -0.120 4.120 24 C -0.056 4.056 25 C -0.174 4.174 26 C 0.090 3.910 27 N -0.487 5.487 28 C 0.102 3.898 29 C 0.081 3.919 30 H 0.273 0.727 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.391 0.609 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.076 0.924 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -7.273 1.507 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.739 3.261 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.130 0.870 9 N -0.143 5.143 10 C 0.023 3.977 11 C 0.335 3.665 12 O -0.394 6.394 13 O -0.345 6.345 14 C 0.262 3.738 15 O -0.494 6.494 16 C -0.099 4.099 17 H 0.111 0.889 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.076 4.076 21 N -0.258 5.258 22 C -0.032 4.032 23 C -0.123 4.123 24 C -0.082 4.082 25 C -0.194 4.194 26 C -0.067 4.067 27 N -0.195 5.195 28 C -0.055 4.055 29 C -0.047 4.047 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.168 0.832 46 H 0.094 0.906 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.468 -7.501 2.048 13.855 hybrid contribution -0.874 0.664 -0.103 1.102 sum 10.594 -6.837 1.945 12.758 Atomic orbital electron populations 1.70073 1.06380 1.28296 1.44424 1.25144 0.94937 0.99926 0.96530 0.86136 0.80064 0.81449 0.78474 1.20177 1.21140 1.19133 1.19687 1.03913 0.86430 1.36727 0.87038 1.43468 1.21423 1.07199 1.42206 1.20545 0.81208 1.04177 0.91745 1.23873 0.83627 0.71777 0.87257 1.90569 1.86184 1.44095 1.18573 1.84532 1.17722 1.83282 1.48958 1.20024 0.87001 0.82143 0.84602 1.90526 1.68355 1.38786 1.51731 1.20887 0.96391 0.96865 0.95736 0.88893 1.21564 0.96578 1.04487 0.92279 1.21580 0.98323 0.95825 0.99327 1.22203 0.98665 0.97674 0.89044 1.61927 1.28887 1.29292 1.05689 1.20936 0.91264 0.91010 0.99991 1.20822 0.96096 0.99540 0.95805 1.21506 0.91632 0.94644 1.00438 1.22149 0.99241 1.01821 0.96154 1.22726 0.96263 0.94847 0.92848 1.67681 0.98848 1.14927 1.38066 1.22678 0.95976 0.95750 0.91121 1.21826 0.90152 0.96595 0.96102 0.91702 0.85721 0.89711 0.75257 0.92645 0.88741 0.91751 0.91273 0.91204 0.94987 0.93654 0.89573 0.84661 0.84902 0.83047 0.83213 0.90582 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.24 9.95 55.50 0.55 -20.69 16 2 C 0.04 0.97 4.69 -17.47 -0.08 0.88 16 3 Si 0.91 18.49 29.65 -169.99 -5.04 13.44 16 4 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.34 -8.12 7.78 -14.93 -0.12 -8.24 16 8 H 0.11 2.53 5.55 -52.48 -0.29 2.24 16 9 N -0.43 -10.21 2.18 -116.08 -0.25 -10.46 16 10 C 0.15 3.46 5.17 -5.19 -0.03 3.44 16 11 C 0.49 11.70 6.81 36.01 0.25 11.95 16 12 O -0.51 -13.64 17.03 -18.75 -0.32 -13.96 16 13 O -0.53 -10.44 13.42 -39.25 -0.53 -10.97 16 14 C 0.47 11.03 6.74 -10.99 -0.07 10.96 16 15 O -0.61 -15.40 15.63 5.54 0.09 -15.31 16 16 C -0.08 -1.50 1.84 -91.69 -0.17 -1.66 16 17 H 0.09 1.78 7.30 -51.93 -0.38 1.40 16 18 C -0.11 -2.09 4.95 -26.60 -0.13 -2.22 16 19 C -0.11 -1.71 6.09 -26.65 -0.16 -1.87 16 20 C 0.05 0.72 5.17 -3.83 -0.02 0.70 16 21 N -0.53 -7.58 4.65 -236.12 -1.10 -8.68 16 22 C 0.10 1.13 5.14 -4.98 -0.03 1.10 16 23 C -0.12 -1.34 4.90 -104.48 -0.51 -1.85 16 24 C -0.06 -0.56 9.86 -39.28 -0.39 -0.95 16 25 C -0.17 -1.56 10.11 -39.44 -0.40 -1.96 16 26 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 27 N -0.49 -5.87 10.36 -13.25 -0.14 -6.01 16 28 C 0.10 1.17 9.07 -17.55 -0.16 1.01 16 29 C 0.08 1.37 4.07 -3.84 -0.02 1.36 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.13 2.89 6.10 -51.93 -0.32 2.57 16 32 H 0.08 1.86 7.57 -51.93 -0.39 1.46 16 33 H 0.39 5.88 9.10 45.56 0.41 6.30 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.99 5.90 -51.93 -0.31 1.69 16 36 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.90 5.76 -51.93 -0.30 0.60 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 41 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.15 1.54 7.95 -52.49 -0.42 1.12 16 46 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 47 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -31.17 380.09 -8.99 -40.16 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.75 Total: 13.42 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: -2.23 Total: 13.34 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.94 Total: -45.84 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.76 Total: -40.24 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.17 -8.99 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.146 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds