Wall clock time and date at job start Wed Apr 1 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48499 * 109.46874 * 274.99687 * 3 2 1 5 5 H 1.48500 * 109.46926 * 34.99142 * 3 2 1 6 6 H 1.48499 * 109.47052 * 154.99328 * 3 2 1 7 7 C 1.38948 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00072 * 211.56771 * 7 2 1 9 9 N 1.37096 * 120.00294 * 31.57142 * 7 2 1 10 10 C 1.46513 * 119.99716 * 8.71802 * 9 7 2 11 11 C 1.50701 * 109.46890 * 263.85841 * 10 9 7 12 12 O 1.20825 * 119.99842 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00827 * 188.71937 * 9 7 2 15 15 O 1.21297 * 120.00806 * 183.28086 * 14 9 7 16 16 C 1.50704 * 119.99669 * 3.27599 * 14 9 7 17 17 H 1.09002 * 109.53761 * 306.45082 * 16 14 9 18 18 C 1.53131 * 109.49991 * 66.50660 * 16 14 9 19 19 C 1.53125 * 109.15317 * 177.55694 * 18 16 14 20 20 C 1.53039 * 109.31159 * 302.40361 * 19 18 16 21 21 N 1.46848 * 109.52299 * 59.16360 * 20 19 18 22 22 C 1.46895 * 110.99814 * 174.16194 * 21 20 19 23 23 C 1.50704 * 109.47195 * 293.95144 * 22 21 20 24 24 C 1.38675 * 120.41839 * 269.72745 * 23 22 21 25 25 C 1.38623 * 118.41873 * 179.77920 * 24 23 22 26 26 C 1.38233 * 119.16208 * 0.47225 * 25 24 23 27 27 N 1.31851 * 120.76264 * 359.76564 * 26 25 24 28 28 C 1.31887 * 121.72628 * 0.02562 * 27 26 25 29 29 C 1.46850 * 111.19452 * 298.25955 * 21 20 19 30 30 H 0.96998 * 119.99775 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46868 * 23.85628 * 10 9 7 32 32 H 1.08999 * 109.46937 * 143.85541 * 10 9 7 33 33 H 0.96704 * 116.99694 * 179.97438 * 13 11 10 34 34 H 1.09003 * 109.48977 * 57.67408 * 18 16 14 35 35 H 1.08992 * 109.55768 * 297.47945 * 18 16 14 36 36 H 1.09008 * 109.49888 * 182.44788 * 19 18 16 37 37 H 1.08994 * 109.50259 * 62.36798 * 19 18 16 38 38 H 1.08997 * 109.46295 * 179.18089 * 20 19 18 39 39 H 1.09003 * 109.46299 * 299.14825 * 20 19 18 40 40 H 1.08997 * 109.47551 * 53.95586 * 22 21 20 41 41 H 1.08997 * 109.46975 * 173.95398 * 22 21 20 42 42 H 1.07999 * 120.78926 * 0.02562 * 24 23 22 43 43 H 1.08005 * 120.41942 * 180.21527 * 25 24 23 44 44 H 1.07997 * 119.61390 * 179.79274 * 26 25 24 45 45 H 1.07999 * 119.62119 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.45754 * 181.76472 * 29 21 20 47 47 H 1.09005 * 109.46417 * 301.72971 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3900 2.1073 -1.3948 5 1 1.5023 2.6199 0.8029 6 1 3.5945 1.4119 0.5918 7 6 2.0088 -1.2033 0.0005 8 1 2.9690 -1.2724 0.4902 9 7 1.4755 -2.3031 -0.6206 10 6 0.2720 -2.1670 -1.4450 11 6 -0.9416 -2.5194 -0.6240 12 8 -0.8143 -2.8506 0.5310 13 8 -2.1640 -2.4652 -1.1759 14 6 2.0582 -3.5093 -0.4729 15 8 1.6219 -4.4709 -1.0697 16 6 3.2522 -3.6633 0.4337 17 1 4.0184 -2.9406 0.1534 18 6 2.8272 -3.4198 1.8845 19 6 4.0318 -3.6380 2.8043 20 6 4.5712 -5.0561 2.6040 21 7 4.9648 -5.2378 1.2010 22 6 5.6150 -6.5398 1.0011 23 6 6.9241 -6.5673 1.7471 24 6 8.0946 -6.1575 1.1266 25 6 9.2747 -6.1955 1.8530 26 6 9.2472 -6.6467 3.1594 27 7 8.1161 -7.0333 3.7157 28 6 6.9742 -7.0068 3.0562 29 6 3.8141 -5.0806 0.3022 30 1 -0.4850 0.8400 -0.0004 31 1 0.1868 -1.1388 -1.7966 32 1 0.3397 -2.8392 -2.3004 33 1 -2.9120 -2.7006 -0.6100 34 1 2.0330 -4.1166 2.1527 35 1 2.4671 -2.3967 1.9924 36 1 3.7251 -3.5085 3.8424 37 1 4.8104 -2.9148 2.5620 38 1 5.4378 -5.2092 3.2471 39 1 3.7966 -5.7789 2.8605 40 1 4.9663 -7.3313 1.3762 41 1 5.7994 -6.6944 -0.0620 42 1 8.0864 -5.8132 0.1030 43 1 10.2045 -5.8805 1.4027 44 1 10.1629 -6.6825 3.7309 45 1 6.0678 -7.3318 3.5451 46 1 4.1310 -5.2517 -0.7266 47 1 3.0430 -5.8032 0.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:07 Heat of formation + Delta-G solvation = -95.819570 kcal Electronic energy + Delta-G solvation = -31359.435251 eV Core-core repulsion = 27120.600328 eV Total energy + Delta-G solvation = -4238.834923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.54234 -41.14209 -40.41953 -39.04358 -37.03045 -36.50128 -35.35892 -33.54372 -33.15472 -32.20068 -31.95846 -29.60502 -27.50197 -26.83086 -25.00177 -24.29376 -24.18260 -22.81880 -22.32483 -21.12822 -20.61765 -18.96252 -18.76602 -18.08426 -17.89398 -17.39296 -17.24605 -16.89899 -16.48821 -16.25034 -16.11784 -16.05393 -15.62458 -15.37737 -15.06178 -14.85838 -14.68173 -14.29630 -14.05671 -13.95919 -13.83415 -13.68557 -13.49954 -13.41064 -13.29715 -12.75563 -12.68150 -12.55498 -12.39898 -12.22371 -12.14277 -11.98961 -11.81586 -11.59420 -11.54598 -11.30148 -10.90618 -10.67217 -10.37226 -10.30481 -9.95263 -9.93064 -9.31039 -8.43982 -5.82814 0.18879 0.41531 1.40664 1.52578 1.62688 1.67243 1.81943 2.27162 2.49645 2.64393 2.92610 3.10205 3.24920 3.56118 3.78912 3.84856 3.93738 3.99725 4.06186 4.14339 4.17996 4.25716 4.32073 4.42534 4.50132 4.52986 4.62133 4.64767 4.69767 4.73515 4.77607 4.79259 4.89630 4.91234 4.99215 5.01983 5.13269 5.26377 5.38789 5.41309 5.43966 5.53415 5.66277 5.82403 5.85212 6.03005 6.09622 6.33635 7.06583 7.08135 7.30685 7.49166 7.89782 8.64575 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002897 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.718788 B = 9662.157221 C =10618.217160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.004 3.996 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.258 1.258 7 C -0.354 4.354 8 H 0.119 0.881 9 N -0.434 5.434 10 C 0.144 3.856 11 C 0.497 3.503 12 O -0.547 6.547 13 O -0.521 6.521 14 C 0.459 3.541 15 O -0.635 6.635 16 C -0.071 4.071 17 H 0.098 0.902 18 C -0.101 4.101 19 C -0.105 4.105 20 C 0.056 3.944 21 N -0.531 5.531 22 C 0.098 3.902 23 C -0.129 4.129 24 C -0.063 4.063 25 C -0.168 4.168 26 C 0.083 3.917 27 N -0.513 5.513 28 C 0.090 3.910 29 C 0.094 3.906 30 H 0.273 0.727 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.413 0.587 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.177 0.823 45 H 0.154 0.846 46 H 0.077 0.923 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.474 -6.812 1.632 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.200 4.200 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.136 0.864 9 N -0.151 5.151 10 C 0.018 3.982 11 C 0.339 3.661 12 O -0.436 6.436 13 O -0.333 6.333 14 C 0.250 3.750 15 O -0.524 6.524 16 C -0.092 4.092 17 H 0.116 0.884 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.072 4.072 21 N -0.255 5.255 22 C -0.030 4.030 23 C -0.131 4.131 24 C -0.089 4.089 25 C -0.187 4.187 26 C -0.074 4.074 27 N -0.222 5.222 28 C -0.067 4.067 29 C -0.034 4.034 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.273 0.727 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.166 0.834 43 H 0.180 0.820 44 H 0.194 0.806 45 H 0.171 0.829 46 H 0.095 0.905 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 13.794 -7.044 2.164 15.639 hybrid contribution -1.662 0.490 -0.161 1.740 sum 12.132 -6.554 2.003 13.934 Atomic orbital electron populations 1.70152 1.07654 1.28910 1.45330 1.25933 0.95537 1.02579 0.95916 0.85105 0.78921 0.77152 0.78370 1.19681 1.21760 1.18200 1.19979 1.04241 0.86639 1.37149 0.86373 1.43699 1.21625 1.07646 1.42132 1.20619 0.81321 1.04228 0.92019 1.23929 0.84725 0.70782 0.86631 1.90550 1.86960 1.46016 1.20114 1.84460 1.17348 1.82584 1.48913 1.20755 0.87987 0.81602 0.84662 1.90487 1.69472 1.39487 1.52906 1.20864 0.94846 0.98563 0.94968 0.88379 1.21417 0.97509 1.02072 0.92915 1.21533 0.96651 0.96892 0.99157 1.22177 0.99185 0.96614 0.89178 1.61921 1.27187 1.31147 1.05287 1.20965 0.91535 0.89625 1.00828 1.20733 0.96019 1.00603 0.95770 1.21779 0.91682 0.94260 1.01191 1.22467 1.00029 1.00573 0.95679 1.23236 0.96507 0.94040 0.93612 1.67694 0.99595 1.15971 1.38913 1.22772 0.96251 0.96233 0.91405 1.21586 0.90537 0.94383 0.96876 0.91695 0.85813 0.88939 0.72733 0.95072 0.91288 0.90263 0.90733 0.89549 0.95247 0.93372 0.88682 0.83388 0.81965 0.80603 0.82918 0.90487 0.96201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.12 9.95 21.66 0.22 -43.90 16 2 C 0.00 0.18 4.69 84.93 0.40 0.58 16 3 Si 0.98 37.48 29.65 68.60 2.03 39.51 16 4 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.29 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.35 -16.95 7.78 84.04 0.65 -16.30 16 8 H 0.12 5.37 5.55 -2.91 -0.02 5.36 16 9 N -0.43 -21.23 2.18 -639.57 -1.40 -22.62 16 10 C 0.14 6.80 5.17 85.63 0.44 7.24 16 11 C 0.50 23.87 6.81 71.24 0.48 24.36 16 12 O -0.55 -30.08 17.03 21.97 0.37 -29.70 16 13 O -0.52 -20.12 13.42 -51.38 -0.69 -20.81 16 14 C 0.46 21.93 6.74 87.66 0.59 22.52 16 15 O -0.63 -33.03 15.63 -3.08 -0.05 -33.08 16 16 C -0.07 -2.78 1.84 -11.49 -0.02 -2.80 16 17 H 0.10 3.72 7.30 -2.39 -0.02 3.71 16 18 C -0.10 -3.86 4.95 30.68 0.15 -3.71 16 19 C -0.10 -3.07 6.09 30.65 0.19 -2.88 16 20 C 0.06 1.49 5.17 86.33 0.45 1.94 16 21 N -0.53 -14.49 4.65 -900.94 -4.19 -18.67 16 22 C 0.10 2.17 5.14 85.56 0.44 2.61 16 23 C -0.13 -2.64 4.90 -19.77 -0.10 -2.74 16 24 C -0.06 -1.11 9.86 22.47 0.22 -0.88 16 25 C -0.17 -2.50 10.11 22.36 0.23 -2.28 16 26 C 0.08 1.42 11.18 84.69 0.95 2.37 16 27 N -0.51 -11.52 10.36 -195.84 -2.03 -13.54 16 28 C 0.09 1.95 9.07 84.67 0.77 2.71 16 29 C 0.09 3.20 4.07 86.32 0.35 3.56 16 30 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 31 H 0.12 5.82 6.10 -2.39 -0.01 5.80 16 32 H 0.09 4.13 7.57 -2.39 -0.02 4.11 16 33 H 0.41 12.06 9.10 -74.05 -0.67 11.38 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 2.98 5.90 -2.39 -0.01 2.97 16 36 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 2.07 5.76 -2.39 -0.01 2.06 16 39 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 1.04 8.07 -2.39 -0.02 1.03 16 41 H 0.09 1.92 7.93 -2.39 -0.02 1.90 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.15 3.01 7.95 -2.91 -0.02 2.99 16 46 H 0.08 2.58 8.01 -2.39 -0.02 2.56 16 47 H 0.02 0.75 8.00 -2.38 -0.02 0.73 16 Total: -1.00 -67.57 380.09 0.80 -66.76 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.33 Total: 39.76 kcal Atomic # 6 Polarization: 30.10 SS G_CDS: 6.19 Total: 36.29 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -7.40 Total: -98.74 kcal Atomic # 8 Polarization: -83.22 SS G_CDS: -0.36 Total: -83.59 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -67.57 0.80 -66.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.055 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds