Wall clock time and date at job start Wed Apr 1 2020 04:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86806 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47146 * 270.00541 * 3 2 1 5 5 H 1.48510 * 109.46437 * 30.00494 * 3 2 1 6 6 H 1.48497 * 109.46900 * 149.99962 * 3 2 1 7 7 C 1.38652 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99840 * 0.02562 * 7 2 1 9 9 O 1.34833 * 120.00172 * 179.97438 * 7 2 1 10 10 C 1.35756 * 116.99613 * 174.96522 * 9 7 2 11 11 C 1.38945 * 120.03423 * 5.36535 * 10 9 7 12 12 C 1.38125 * 120.06724 * 180.02562 * 11 10 9 13 13 C 1.38197 * 120.14155 * 359.69721 * 12 11 10 14 14 C 1.38920 * 120.06353 * 0.55465 * 13 12 11 15 15 N 1.39946 * 120.03478 * 179.74535 * 14 13 12 16 16 C 1.34778 * 119.99847 * 214.85269 * 15 14 13 17 17 O 1.21588 * 119.99907 * 355.49160 * 16 15 14 18 18 N 1.34778 * 119.99922 * 175.49551 * 16 15 14 19 19 C 1.46503 * 119.99731 * 180.27724 * 18 16 15 20 20 C 1.50705 * 109.46907 * 179.72214 * 19 18 16 21 21 O 1.21277 * 119.99859 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99954 * 179.97438 * 20 19 18 23 23 C 1.46495 * 119.99901 * 179.97438 * 22 20 19 24 24 C 1.54260 * 110.03368 * 272.90954 * 23 22 20 25 25 C 1.54969 * 104.16124 * 217.13512 * 24 23 22 26 26 C 1.54890 * 102.77384 * 37.89032 * 25 24 23 27 27 C 1.53878 * 110.03232 * 155.68895 * 23 22 20 28 28 C 1.38733 * 120.03178 * 185.34539 * 10 9 7 29 29 H 0.97002 * 119.99517 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.97318 * 359.97438 * 11 10 9 31 31 H 1.08006 * 119.93126 * 180.02562 * 12 11 10 32 32 H 1.07994 * 119.97212 * 180.28244 * 13 12 11 33 33 H 0.97000 * 120.00487 * 34.84981 * 15 14 13 34 34 H 0.96997 * 119.99990 * 359.97438 * 18 16 15 35 35 H 1.09003 * 109.47127 * 299.71656 * 19 18 16 36 36 H 1.09000 * 109.47517 * 59.72302 * 19 18 16 37 37 H 0.96996 * 119.99766 * 0.02562 * 22 20 19 38 38 H 1.09000 * 110.01923 * 34.30166 * 23 22 20 39 39 H 1.09007 * 110.48725 * 335.78452 * 24 23 22 40 40 H 1.08999 * 110.48812 * 98.42971 * 24 23 22 41 41 H 1.08996 * 110.72337 * 279.57618 * 25 24 23 42 42 H 1.09000 * 110.91977 * 156.29296 * 25 24 23 43 43 H 1.09005 * 110.48109 * 203.40423 * 26 25 24 44 44 H 1.08996 * 110.60602 * 80.81783 * 26 25 24 45 45 H 1.08998 * 110.03460 * 238.56837 * 27 23 22 46 46 H 1.09001 * 110.03202 * 0.02562 * 27 23 22 47 47 H 1.08000 * 120.06782 * 0.03910 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4057 0.1046 11 6 3.2221 -3.5744 0.0947 12 6 3.8484 -4.8007 0.2027 13 6 5.2241 -4.8699 0.3146 14 6 5.9805 -3.7047 0.3304 15 7 7.3731 -3.7753 0.4491 16 6 8.0398 -2.8265 1.1360 17 8 7.4422 -1.8664 1.5826 18 7 9.3688 -2.9419 1.3279 19 6 10.0924 -1.9137 2.0798 20 6 11.5521 -2.2809 2.1560 21 8 11.9488 -3.3007 1.6332 22 7 12.4166 -1.4753 2.8042 23 6 13.8354 -1.8326 2.8787 24 6 14.0870 -2.7464 4.0957 25 6 15.4691 -2.2935 4.6306 26 6 15.4260 -0.7577 4.4339 27 6 14.6866 -0.5687 3.0931 28 6 5.3543 -2.4714 0.2222 29 1 -0.4849 0.8401 0.0004 30 1 2.1472 -3.5239 0.0033 31 1 3.2622 -5.7078 0.1943 32 1 5.7113 -5.8304 0.3942 33 1 7.8587 -4.5069 0.0370 34 1 9.8455 -3.7080 0.9719 35 1 9.9853 -0.9527 1.5766 36 1 9.6822 -1.8440 3.0873 37 1 12.0993 -0.6595 3.2219 38 1 14.1416 -2.3379 1.9627 39 1 13.3170 -2.5950 4.8522 40 1 14.1202 -3.7915 3.7877 41 1 16.2738 -2.7357 4.0434 42 1 15.5796 -2.5448 5.6855 43 1 16.4361 -0.3525 4.3729 44 1 14.8736 -0.2825 5.2444 45 1 15.4064 -0.4612 2.2817 46 1 14.0440 0.3104 3.1422 47 1 5.9404 -1.5643 0.2304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746764002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:49 Heat of formation + Delta-G solvation = -64.215933 kcal Electronic energy + Delta-G solvation = -28957.666494 eV Core-core repulsion = 24720.202008 eV Total energy + Delta-G solvation = -4237.464486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77597 -40.12895 -38.85805 -38.20195 -36.75051 -34.52579 -34.22972 -34.09524 -32.31235 -29.85539 -29.31830 -29.26648 -28.32306 -26.67117 -25.13677 -22.63741 -21.55378 -21.27899 -20.99637 -20.85026 -20.66596 -18.87338 -18.09940 -17.51783 -17.11832 -16.82018 -16.22009 -15.97528 -15.70637 -15.25911 -15.12627 -14.92447 -14.74795 -14.40843 -14.10645 -13.92447 -13.81949 -13.58361 -13.44554 -13.08443 -12.81401 -12.53565 -12.31035 -12.23520 -12.07869 -11.71507 -11.60232 -11.59697 -11.32803 -11.17805 -11.17261 -10.94182 -10.80997 -10.37453 -10.24014 -9.96789 -9.70378 -9.59993 -9.32354 -9.23589 -8.80565 -7.73175 -7.25509 -6.35274 -4.01571 2.02419 2.11615 2.29125 2.30788 2.91565 3.23969 3.30640 3.31487 3.50139 3.94600 4.06942 4.14440 4.26110 4.31661 4.36212 4.56971 4.84112 4.90893 4.94966 4.95936 4.98242 5.04617 5.07494 5.10930 5.18419 5.24359 5.37690 5.51434 5.59104 5.61519 5.67165 5.77643 5.78630 6.02313 6.09953 6.14465 6.18486 6.32647 6.46565 6.73642 6.94629 6.98250 7.14352 7.20705 7.38927 7.65469 7.67155 7.87136 7.97714 8.09786 8.58819 9.00525 9.64361 10.72208 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.001864 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.117143 B =15015.474487 C =16530.566667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.387 4.387 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.173 3.827 11 C -0.233 4.233 12 C -0.060 4.060 13 C -0.227 4.227 14 C 0.191 3.809 15 N -0.679 5.679 16 C 0.703 3.297 17 O -0.564 6.564 18 N -0.737 5.737 19 C 0.120 3.880 20 C 0.512 3.488 21 O -0.536 6.536 22 N -0.722 5.722 23 C 0.140 3.860 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.132 4.132 28 C -0.186 4.186 29 H 0.279 0.721 30 H 0.134 0.866 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.404 0.596 34 H 0.407 0.593 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.691 -4.789 7.103 31.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.463 4.463 8 H 0.125 0.875 9 O -0.119 6.119 10 C 0.120 3.880 11 C -0.252 4.252 12 C -0.079 4.079 13 C -0.249 4.249 14 C 0.097 3.903 15 N -0.326 5.326 16 C 0.404 3.596 17 O -0.439 6.439 18 N -0.397 5.397 19 C -0.008 4.008 20 C 0.298 3.702 21 O -0.413 6.413 22 N -0.374 5.374 23 C 0.035 3.965 24 C -0.174 4.174 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.170 4.170 28 C -0.208 4.208 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.239 0.761 34 H 0.244 0.756 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.239 0.761 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 30.362 -4.244 7.134 31.476 hybrid contribution 0.448 0.307 -0.118 0.556 sum 30.810 -3.937 7.016 31.843 Atomic orbital electron populations 1.69649 1.05528 1.28397 1.48303 1.24449 0.95012 0.98798 0.95691 0.86211 0.80568 0.81453 0.78954 1.19930 1.20863 1.18085 1.20783 0.76895 0.96633 1.51980 0.87549 1.83584 1.22540 1.25605 1.80218 1.18870 0.91149 0.85548 0.92426 1.21297 1.01263 0.91842 1.10840 1.20540 0.93298 0.96859 0.97179 1.20326 0.93937 0.95733 1.14870 1.16927 0.80081 0.93597 0.99699 1.42395 1.06117 1.28338 1.55729 1.15821 0.81049 0.83328 0.79452 1.91012 1.66793 1.31463 1.54630 1.44683 1.06793 1.27639 1.60555 1.20858 0.87897 0.92914 0.99161 1.20635 0.88271 0.83609 0.77670 1.90697 1.79054 1.25335 1.46217 1.46094 1.08373 1.26331 1.56603 1.21696 0.79501 0.95569 0.99702 1.22817 0.97508 0.99886 0.97234 1.22495 0.97050 0.95467 1.01273 1.22366 1.00536 0.96480 0.96888 1.22453 0.98970 0.97039 0.98579 1.20185 0.92271 0.97575 1.10757 0.91135 0.84856 0.86738 0.87180 0.76115 0.75645 0.88212 0.88241 0.76061 0.88952 0.91003 0.90966 0.91223 0.91218 0.91299 0.91330 0.90564 0.90827 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 2 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 3 Si 0.90 22.48 28.62 -169.99 -4.86 17.61 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.39 -11.22 9.95 30.89 0.31 -10.92 16 8 H 0.11 3.11 5.43 -52.49 -0.29 2.83 16 9 O -0.21 -5.95 8.58 0.02 0.00 -5.95 16 10 C 0.17 4.23 6.64 -39.14 -0.26 3.97 16 11 C -0.23 -5.14 9.17 -39.36 -0.36 -5.50 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.48 16 13 C -0.23 -3.82 9.96 -39.34 -0.39 -4.22 16 14 C 0.19 3.49 6.30 -83.71 -0.53 2.96 16 15 N -0.68 -9.75 5.34 -14.24 -0.08 -9.83 16 16 C 0.70 10.76 8.41 -86.92 -0.73 10.03 16 17 O -0.56 -11.09 13.78 5.29 0.07 -11.01 16 18 N -0.74 -8.30 5.53 -66.41 -0.37 -8.67 16 19 C 0.12 1.10 6.15 -5.19 -0.03 1.07 16 20 C 0.51 4.43 7.89 -10.98 -0.09 4.34 16 21 O -0.54 -6.27 15.33 5.56 0.09 -6.19 16 22 N -0.72 -4.25 5.04 -52.72 -0.27 -4.52 16 23 C 0.14 0.82 3.23 -66.82 -0.22 0.60 16 24 C -0.14 -0.79 6.54 -25.03 -0.16 -0.95 16 25 C -0.12 -0.54 6.91 -24.69 -0.17 -0.71 16 26 C -0.12 -0.46 6.83 -25.07 -0.17 -0.63 16 27 C -0.13 -0.53 6.57 -25.61 -0.17 -0.70 16 28 C -0.19 -4.13 8.64 -39.21 -0.34 -4.47 16 29 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.13 3.06 5.63 -52.49 -0.30 2.76 16 31 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.40 4.21 8.84 -40.82 -0.36 3.85 16 34 H 0.41 4.04 7.46 -40.82 -0.30 3.74 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 1.43 8.31 -40.82 -0.34 1.09 16 38 H 0.09 0.70 7.59 -51.93 -0.39 0.30 16 39 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.24 7.61 -51.93 -0.40 -0.15 16 47 H 0.14 3.16 6.22 -52.49 -0.33 2.84 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -35.36 390.92 -9.03 -44.40 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.48 Total: 8.27 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -3.80 Total: -4.88 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.07 Total: -48.14 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.16 Total: -23.16 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.86 Total: 17.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.36 -9.03 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746764002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.820 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds