Wall clock time and date at job start Wed Apr 1 2020 04:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86806 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47146 * 270.00541 * 3 2 1 5 5 H 1.48510 * 109.46437 * 30.00494 * 3 2 1 6 6 H 1.48497 * 109.46900 * 149.99962 * 3 2 1 7 7 C 1.38652 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99840 * 0.02562 * 7 2 1 9 9 O 1.34833 * 120.00172 * 179.97438 * 7 2 1 10 10 C 1.35756 * 116.99613 * 174.96522 * 9 7 2 11 11 C 1.38945 * 120.03423 * 5.36535 * 10 9 7 12 12 C 1.38125 * 120.06724 * 180.02562 * 11 10 9 13 13 C 1.38197 * 120.14155 * 359.69721 * 12 11 10 14 14 C 1.38920 * 120.06353 * 0.55465 * 13 12 11 15 15 N 1.39946 * 120.03478 * 179.74535 * 14 13 12 16 16 C 1.34778 * 119.99847 * 214.85269 * 15 14 13 17 17 O 1.21588 * 119.99907 * 355.49160 * 16 15 14 18 18 N 1.34778 * 119.99922 * 175.49551 * 16 15 14 19 19 C 1.46503 * 119.99731 * 180.27724 * 18 16 15 20 20 C 1.50705 * 109.46907 * 179.72214 * 19 18 16 21 21 O 1.21277 * 119.99859 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99954 * 179.97438 * 20 19 18 23 23 C 1.46495 * 119.99901 * 179.97438 * 22 20 19 24 24 C 1.54260 * 110.03368 * 272.90954 * 23 22 20 25 25 C 1.54969 * 104.16124 * 217.13512 * 24 23 22 26 26 C 1.54890 * 102.77384 * 37.89032 * 25 24 23 27 27 C 1.53878 * 110.03232 * 155.68895 * 23 22 20 28 28 C 1.38733 * 120.03178 * 185.34539 * 10 9 7 29 29 H 0.97002 * 119.99517 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.97318 * 359.97438 * 11 10 9 31 31 H 1.08006 * 119.93126 * 180.02562 * 12 11 10 32 32 H 1.07994 * 119.97212 * 180.28244 * 13 12 11 33 33 H 0.97000 * 120.00487 * 34.84981 * 15 14 13 34 34 H 0.96997 * 119.99990 * 359.97438 * 18 16 15 35 35 H 1.09003 * 109.47127 * 299.71656 * 19 18 16 36 36 H 1.09000 * 109.47517 * 59.72302 * 19 18 16 37 37 H 0.96996 * 119.99766 * 0.02562 * 22 20 19 38 38 H 1.09000 * 110.01923 * 34.30166 * 23 22 20 39 39 H 1.09007 * 110.48725 * 335.78452 * 24 23 22 40 40 H 1.08999 * 110.48812 * 98.42971 * 24 23 22 41 41 H 1.08996 * 110.72337 * 279.57618 * 25 24 23 42 42 H 1.09000 * 110.91977 * 156.29296 * 25 24 23 43 43 H 1.09005 * 110.48109 * 203.40423 * 26 25 24 44 44 H 1.08996 * 110.60602 * 80.81783 * 26 25 24 45 45 H 1.08998 * 110.03460 * 238.56837 * 27 23 22 46 46 H 1.09001 * 110.03202 * 0.02562 * 27 23 22 47 47 H 1.08000 * 120.06782 * 0.03910 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4057 0.1046 11 6 3.2221 -3.5744 0.0947 12 6 3.8484 -4.8007 0.2027 13 6 5.2241 -4.8699 0.3146 14 6 5.9805 -3.7047 0.3304 15 7 7.3731 -3.7753 0.4491 16 6 8.0398 -2.8265 1.1360 17 8 7.4422 -1.8664 1.5826 18 7 9.3688 -2.9419 1.3279 19 6 10.0924 -1.9137 2.0798 20 6 11.5521 -2.2809 2.1560 21 8 11.9488 -3.3007 1.6332 22 7 12.4166 -1.4753 2.8042 23 6 13.8354 -1.8326 2.8787 24 6 14.0870 -2.7464 4.0957 25 6 15.4691 -2.2935 4.6306 26 6 15.4260 -0.7577 4.4339 27 6 14.6866 -0.5687 3.0931 28 6 5.3543 -2.4714 0.2222 29 1 -0.4849 0.8401 0.0004 30 1 2.1472 -3.5239 0.0033 31 1 3.2622 -5.7078 0.1943 32 1 5.7113 -5.8304 0.3942 33 1 7.8587 -4.5069 0.0370 34 1 9.8455 -3.7080 0.9719 35 1 9.9853 -0.9527 1.5766 36 1 9.6822 -1.8440 3.0873 37 1 12.0993 -0.6595 3.2219 38 1 14.1416 -2.3379 1.9627 39 1 13.3170 -2.5950 4.8522 40 1 14.1202 -3.7915 3.7877 41 1 16.2738 -2.7357 4.0434 42 1 15.5796 -2.5448 5.6855 43 1 16.4361 -0.3525 4.3729 44 1 14.8736 -0.2825 5.2444 45 1 15.4064 -0.4612 2.2817 46 1 14.0440 0.3104 3.1422 47 1 5.9404 -1.5643 0.2304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746764002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:48 Heat of formation + Delta-G solvation = -90.323831 kcal Electronic energy + Delta-G solvation = -28958.798618 eV Core-core repulsion = 24720.202008 eV Total energy + Delta-G solvation = -4238.596610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85465 -41.10247 -40.46175 -38.83101 -38.33249 -35.61844 -35.54107 -34.79035 -34.41961 -31.33637 -30.59230 -29.66182 -29.35703 -27.47987 -27.14304 -24.07969 -22.98945 -22.13273 -21.90325 -21.48700 -21.34359 -20.08206 -19.80656 -19.26365 -17.84112 -17.79922 -17.15285 -17.06609 -16.84387 -16.49107 -16.23154 -16.15059 -15.82768 -15.68516 -15.64500 -15.40363 -14.91592 -14.37068 -14.34581 -14.29094 -14.22625 -14.18153 -13.82804 -13.24191 -13.05830 -12.95369 -12.72642 -12.52507 -12.49223 -12.05259 -12.03148 -11.96414 -11.78142 -11.61487 -11.49453 -11.34955 -11.10779 -11.02916 -10.85651 -10.37141 -10.12464 -9.35205 -8.89444 -8.49251 -6.21103 0.44727 0.67322 1.28657 1.31237 1.34044 1.41556 1.51431 1.99005 2.14715 2.28719 2.77117 2.97865 3.12406 3.32209 3.50338 3.66928 3.70041 3.98913 4.14254 4.29606 4.32409 4.38159 4.41789 4.45183 4.50868 4.53907 4.61770 4.64956 4.73616 4.76118 4.88719 4.91640 5.03300 5.10631 5.19922 5.22779 5.27253 5.35034 5.38387 5.44730 5.45477 5.53214 5.70233 5.81239 5.88845 5.93467 6.24600 6.38732 6.85646 6.89055 7.06235 7.40415 7.62160 8.62083 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.001864 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.117143 B =15015.474487 C =16530.566667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.273 1.273 7 C -0.397 4.397 8 H 0.088 0.912 9 O -0.249 6.249 10 C 0.134 3.866 11 C -0.248 4.248 12 C -0.051 4.051 13 C -0.195 4.195 14 C 0.200 3.800 15 N -0.665 5.665 16 C 0.702 3.298 17 O -0.609 6.609 18 N -0.719 5.719 19 C 0.117 3.883 20 C 0.518 3.482 21 O -0.569 6.569 22 N -0.707 5.707 23 C 0.138 3.862 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.201 4.201 29 H 0.285 0.715 30 H 0.114 0.886 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.427 0.573 34 H 0.416 0.584 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.418 0.582 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.679 -6.077 7.699 35.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.198 1.198 7 C -0.473 4.473 8 H 0.105 0.895 9 O -0.156 6.156 10 C 0.085 3.915 11 C -0.268 4.268 12 C -0.070 4.070 13 C -0.216 4.216 14 C 0.104 3.896 15 N -0.314 5.314 16 C 0.402 3.598 17 O -0.488 6.488 18 N -0.379 5.379 19 C -0.011 4.011 20 C 0.304 3.696 21 O -0.448 6.448 22 N -0.359 5.359 23 C 0.033 3.967 24 C -0.174 4.174 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.165 4.165 28 C -0.223 4.223 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.266 0.734 34 H 0.255 0.745 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.255 0.745 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 33.443 -5.570 7.735 34.775 hybrid contribution -0.207 0.407 -0.255 0.524 sum 33.236 -5.163 7.480 34.456 Atomic orbital electron populations 1.69716 1.06568 1.29457 1.50311 1.25187 0.95861 1.01799 0.95715 0.85316 0.78606 0.78094 0.79307 1.18895 1.18807 1.19755 1.20766 0.77909 0.96322 1.52335 0.89503 1.83530 1.21493 1.27564 1.83033 1.19364 0.92269 0.85476 0.94420 1.21352 1.00478 0.93018 1.11988 1.20995 0.94403 0.96520 0.95057 1.20889 0.93246 0.97179 1.10264 1.17042 0.81966 0.92708 0.97858 1.42197 1.04679 1.28966 1.55542 1.15971 0.81959 0.82710 0.79191 1.91003 1.68021 1.33334 1.56469 1.44543 1.05376 1.28198 1.59742 1.21018 0.88062 0.92591 0.99400 1.20494 0.88143 0.83378 0.77596 1.90688 1.79442 1.26784 1.47904 1.46018 1.08222 1.26227 1.55436 1.21745 0.79396 0.96592 0.98943 1.22781 0.98526 0.98979 0.97118 1.22493 0.96015 0.96087 1.01489 1.22366 1.01078 0.95811 0.96705 1.22434 0.98864 0.96257 0.98993 1.20222 0.91310 0.98803 1.11956 0.90583 0.86815 0.82644 0.81888 0.73359 0.74521 0.87517 0.87450 0.74470 0.90731 0.91176 0.92565 0.91115 0.90743 0.90430 0.90871 0.90179 0.89737 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.08 13.96 21.61 0.30 -55.78 16 2 C 0.01 0.78 5.49 84.83 0.47 1.24 16 3 Si 0.96 47.99 28.62 68.60 1.96 49.95 16 4 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.27 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.40 -24.33 9.95 67.92 0.68 -23.65 16 8 H 0.09 5.46 5.43 -2.91 -0.02 5.45 16 9 O -0.25 -14.55 8.58 -22.84 -0.20 -14.75 16 10 C 0.13 6.80 6.64 22.56 0.15 6.95 16 11 C -0.25 -11.12 9.17 22.41 0.21 -10.91 16 12 C -0.05 -1.70 10.03 22.23 0.22 -1.48 16 13 C -0.20 -5.66 9.96 22.42 0.22 -5.43 16 14 C 0.20 6.81 6.30 38.13 0.24 7.05 16 15 N -0.66 -17.14 5.34 -317.22 -1.69 -18.83 16 16 C 0.70 20.28 8.41 179.05 1.51 21.79 16 17 O -0.61 -23.81 13.78 -3.99 -0.06 -23.87 16 18 N -0.72 -14.81 5.53 -482.27 -2.67 -17.48 16 19 C 0.12 1.96 6.15 85.63 0.53 2.48 16 20 C 0.52 8.22 7.89 87.66 0.69 8.91 16 21 O -0.57 -12.66 15.33 -3.02 -0.05 -12.71 16 22 N -0.71 -7.20 5.04 -439.11 -2.21 -9.42 16 23 C 0.14 1.44 3.23 45.72 0.15 1.59 16 24 C -0.14 -1.44 6.54 31.69 0.21 -1.24 16 25 C -0.12 -0.88 6.91 31.91 0.22 -0.66 16 26 C -0.12 -0.63 6.83 31.67 0.22 -0.41 16 27 C -0.13 -0.76 6.57 31.32 0.21 -0.55 16 28 C -0.20 -9.01 8.64 22.51 0.19 -8.81 16 29 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.11 5.50 5.63 -2.91 -0.02 5.48 16 31 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.43 7.08 8.84 -92.71 -0.82 6.26 16 34 H 0.42 7.26 7.46 -92.71 -0.69 6.57 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 2.07 8.31 -92.71 -0.77 1.30 16 38 H 0.07 1.08 7.59 -2.39 -0.02 1.07 16 39 H 0.07 0.77 8.05 -2.38 -0.02 0.75 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 44 H 0.07 0.33 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.34 7.61 -2.39 -0.02 0.32 16 47 H 0.12 5.62 6.22 -2.91 -0.02 5.60 16 Total: -1.00 -81.89 390.92 0.25 -81.64 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -1.24 Total: 24.39 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 6.10 Total: -3.15 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -6.28 Total: -101.51 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.30 Total: -51.32 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.96 Total: 49.95 kcal Total: -81.89 0.25 -81.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746764002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.685 kcal (2) G-P(sol) polarization free energy of solvation -81.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds