Wall clock time and date at job start Wed Apr 1 2020 04:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48496 * 109.47651 * 240.00470 * 3 2 1 5 5 H 1.48504 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46969 * 120.00225 * 3 2 1 7 7 C 1.37873 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00111 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99962 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99819 * 179.97438 * 11 10 9 14 14 N 1.46505 * 109.47332 * 179.97438 * 13 11 10 15 15 C 1.39699 * 120.00100 * 180.02562 * 14 13 11 16 16 C 1.39022 * 120.00645 * 359.71673 * 15 14 13 17 17 C 1.38211 * 120.21941 * 179.76917 * 16 15 14 18 18 C 1.38024 * 120.22405 * 0.51529 * 17 16 15 19 19 C 1.39576 * 120.00764 * 359.74177 * 18 17 16 20 20 C 1.47863 * 120.10915 * 180.02562 * 19 18 17 21 21 O 1.21542 * 120.00420 * 218.98965 * 20 19 18 22 22 N 1.34781 * 119.99839 * 38.98863 * 20 19 18 23 23 C 1.47151 * 120.98307 * 5.51180 * 22 20 19 24 24 C 1.53713 * 108.16366 * 129.43105 * 23 22 20 25 25 O 1.42961 * 109.14831 * 52.53734 * 24 23 22 26 26 C 1.42960 * 114.16577 * 297.28905 * 25 24 23 27 27 C 1.47154 * 120.98253 * 185.78818 * 22 20 19 28 28 C 1.38646 * 120.00421 * 180.02562 * 15 14 13 29 29 H 0.97000 * 120.00209 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46947 * 59.99890 * 9 7 2 31 31 H 1.09001 * 109.46838 * 300.00169 * 9 7 2 32 32 H 0.97000 * 119.99829 * 359.97438 * 10 9 7 33 33 H 1.08999 * 109.47214 * 299.99852 * 13 11 10 34 34 H 1.09003 * 109.47655 * 59.99515 * 13 11 10 35 35 H 0.97004 * 119.99340 * 359.97438 * 14 13 11 36 36 H 1.07998 * 119.88994 * 0.02889 * 16 15 14 37 37 H 1.07999 * 119.88439 * 180.25754 * 17 16 15 38 38 H 1.08008 * 119.99308 * 179.72191 * 18 17 16 39 39 H 1.09000 * 109.67933 * 249.21229 * 23 22 20 40 40 H 1.09000 * 109.68483 * 9.75898 * 23 22 20 41 41 H 1.08996 * 109.65238 * 292.56686 * 24 23 22 42 42 H 1.08998 * 109.48270 * 172.39975 * 24 23 22 43 43 H 1.09001 * 109.51140 * 302.65892 * 26 25 24 44 44 H 1.08994 * 109.55842 * 182.52936 * 26 25 24 45 45 H 1.09005 * 109.68017 * 350.23959 * 27 22 20 46 46 H 1.09002 * 109.67927 * 110.78883 * 27 22 20 47 47 H 1.08007 * 120.10788 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5613 -5.1049 -0.0011 13 6 2.7329 -6.0288 -0.0016 14 7 2.0005 -7.2976 -0.0015 15 6 2.6990 -8.5074 -0.0015 16 6 4.0892 -8.5075 -0.0075 17 6 4.7848 -9.7018 -0.0026 18 6 4.1038 -10.9024 -0.0025 19 6 2.7081 -10.9133 -0.0018 20 6 1.9764 -12.1982 -0.0012 21 8 0.9644 -12.3217 -0.6629 22 7 2.4316 -13.2325 0.7333 23 6 3.5837 -13.0725 1.6347 24 6 3.1917 -13.6222 3.0156 25 8 2.6839 -14.9501 2.8648 26 6 1.4935 -15.0356 2.0777 27 6 1.7950 -14.5568 0.6530 28 6 2.0059 -9.7081 -0.0019 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6246 -2.5571 0.8897 32 1 3.1566 -3.4354 -0.0009 33 1 3.3595 -5.9706 -0.8916 34 1 3.3598 -5.9714 0.8883 35 1 1.0304 -7.2975 -0.0007 36 1 4.6275 -7.5712 -0.0117 37 1 5.8647 -9.6956 -0.0031 38 1 4.6511 -11.8335 -0.0032 39 1 4.4358 -13.6284 1.2435 40 1 3.8407 -12.0165 1.7181 41 1 2.4246 -12.9871 3.4587 42 1 4.0687 -13.6391 3.6625 43 1 0.7203 -14.4057 2.5175 44 1 1.1485 -16.0691 2.0491 45 1 0.8669 -14.4842 0.0859 46 1 2.4701 -15.2596 0.1647 47 1 0.9258 -9.7103 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759769542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:07 Heat of formation + Delta-G solvation = -76.442167 kcal Electronic energy + Delta-G solvation = -29053.050458 eV Core-core repulsion = 24815.055802 eV Total energy + Delta-G solvation = -4237.994656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98795 -39.65491 -38.95914 -38.27404 -35.60478 -35.01226 -34.31148 -32.47725 -32.15676 -31.25532 -30.25921 -28.28507 -27.88038 -26.08520 -24.85364 -23.99952 -22.64105 -22.53872 -21.64153 -20.03134 -19.68973 -18.30785 -17.44633 -17.14387 -16.62121 -16.32093 -16.23120 -16.01566 -15.83896 -15.45751 -15.42631 -15.27573 -15.13383 -14.84096 -14.27998 -14.17136 -13.79907 -13.76785 -13.59612 -13.41960 -12.95704 -12.75631 -12.64420 -12.28493 -12.05615 -12.02129 -11.77045 -11.74568 -11.53969 -11.19224 -11.08251 -10.93975 -10.66160 -10.40642 -10.34655 -10.09156 -9.51808 -9.35047 -9.20952 -8.97945 -8.83765 -8.07353 -7.57521 -6.24310 -4.32334 0.77663 1.33358 2.36498 2.54345 3.08590 3.17066 3.20291 3.25916 3.27273 3.31820 3.64069 3.97047 4.08727 4.23114 4.29057 4.47868 4.55342 4.67095 4.72221 4.75051 4.90108 4.96999 5.06067 5.11196 5.11912 5.12482 5.22510 5.25814 5.27309 5.31333 5.34372 5.40971 5.42915 5.68970 5.93477 6.01779 6.15388 6.24425 6.49564 6.57754 6.90205 7.08176 7.19041 7.24020 7.39172 7.54218 7.65928 7.77430 7.86942 8.42515 8.63176 8.87867 9.34328 10.85719 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001577 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.588505 B =17746.733426 C =18024.418923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.705 5.705 11 C 0.492 3.508 12 O -0.552 6.552 13 C 0.102 3.898 14 N -0.728 5.728 15 C 0.223 3.777 16 C -0.180 4.180 17 C -0.074 4.074 18 C -0.161 4.161 19 C -0.085 4.085 20 C 0.566 3.434 21 O -0.531 6.531 22 N -0.614 5.614 23 C 0.063 3.937 24 C 0.045 3.955 25 O -0.381 6.381 26 C 0.048 3.952 27 C 0.077 3.923 28 C -0.141 4.141 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.393 0.607 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 -28.444 4.320 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.353 5.353 11 C 0.276 3.724 12 O -0.431 6.431 13 C -0.026 4.026 14 N -0.359 5.359 15 C 0.118 3.882 16 C -0.203 4.203 17 C -0.093 4.093 18 C -0.182 4.182 19 C -0.089 4.089 20 C 0.355 3.645 21 O -0.407 6.407 22 N -0.349 5.349 23 C -0.059 4.059 24 C -0.032 4.032 25 O -0.299 6.299 26 C -0.030 4.030 27 C -0.046 4.046 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.226 0.774 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.076 0.924 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.095 0.905 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.804 -28.451 4.039 30.700 hybrid contribution 0.478 1.340 -0.163 1.432 sum 11.282 -27.111 3.877 29.619 Atomic orbital electron populations 1.69956 1.06144 1.27580 1.48458 1.24954 0.94933 0.99526 0.94546 0.86445 0.79404 0.82171 0.78718 1.20016 1.21022 1.20029 1.21163 0.93265 0.90344 1.53803 0.91826 1.19165 0.88230 0.81769 0.97943 1.46415 1.11463 1.05835 1.71587 1.20309 0.89366 0.84674 0.78047 1.90668 1.16695 1.84515 1.51249 1.21151 0.94744 0.83602 1.03139 1.44509 1.09464 1.01238 1.80694 1.17686 0.91445 0.85673 0.93398 1.20879 0.92006 0.99137 1.08326 1.20803 0.99673 0.91422 0.97353 1.21042 0.92395 0.98528 1.06202 1.19405 0.93750 0.92070 1.03642 1.18519 0.83795 0.83434 0.78725 1.90789 1.24456 1.82949 1.42516 1.47997 1.32954 1.10291 1.43640 1.22936 0.88567 1.04253 0.90190 1.23118 1.00032 0.84168 0.95908 1.87965 1.42707 1.27494 1.71723 1.22994 0.87362 1.02682 0.89929 1.22315 1.00400 0.83505 0.98356 1.20555 1.00072 0.89569 1.06294 0.92280 0.95328 0.95344 0.77383 0.89444 0.89447 0.74717 0.85462 0.85457 0.85753 0.90251 0.87080 0.92362 0.87401 0.92445 0.87484 0.87882 0.90484 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.34 5.43 -5.19 -0.03 6.31 16 10 N -0.70 -13.65 5.55 -61.48 -0.34 -13.99 16 11 C 0.49 8.94 7.90 -10.99 -0.09 8.85 16 12 O -0.55 -12.35 15.67 5.56 0.09 -12.26 16 13 C 0.10 1.28 5.39 -5.19 -0.03 1.25 16 14 N -0.73 -9.56 5.70 -59.84 -0.34 -9.90 16 15 C 0.22 2.63 6.65 -83.83 -0.56 2.07 16 16 C -0.18 -1.73 9.31 -39.30 -0.37 -2.10 16 17 C -0.07 -0.59 10.02 -39.67 -0.40 -0.99 16 18 C -0.16 -1.36 7.41 -39.16 -0.29 -1.65 16 19 C -0.08 -0.93 5.16 -105.00 -0.54 -1.47 16 20 C 0.57 6.71 7.35 -12.32 -0.09 6.62 16 21 O -0.53 -8.18 16.38 5.33 0.09 -8.09 16 22 N -0.61 -5.42 3.01 -173.12 -0.52 -5.94 16 23 C 0.06 0.39 5.04 -3.32 -0.02 0.37 16 24 C 0.05 0.27 7.00 37.53 0.26 0.53 16 25 O -0.38 -2.92 10.74 -35.23 -0.38 -3.30 16 26 C 0.05 0.31 6.98 37.31 0.26 0.57 16 27 C 0.08 0.58 6.65 -3.53 -0.02 0.55 16 28 C -0.14 -1.72 9.48 -38.97 -0.37 -2.09 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 6.30 8.32 -40.82 -0.34 5.96 16 33 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.41 6.08 7.45 -40.82 -0.30 5.78 16 36 H 0.13 1.03 6.71 -52.49 -0.35 0.68 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.79 6.40 -52.48 -0.34 0.46 16 39 H 0.08 0.39 8.02 -51.93 -0.42 -0.03 16 40 H 0.11 0.64 4.92 -51.93 -0.26 0.39 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.88 7.06 -51.93 -0.37 0.51 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.13 1.67 8.05 -52.48 -0.42 1.25 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -34.36 389.47 -9.05 -43.41 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.53 Total: 7.87 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.69 Total: 5.83 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.47 Total: -54.61 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.20 Total: -23.65 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.36 -9.05 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759769542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.032 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds