Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48496 * 109.47651 * 240.00470 * 3 2 1 5 5 H 1.48504 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46969 * 120.00225 * 3 2 1 7 7 C 1.37873 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00111 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99962 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99819 * 179.97438 * 11 10 9 14 14 N 1.46505 * 109.47332 * 179.97438 * 13 11 10 15 15 C 1.39699 * 120.00100 * 180.02562 * 14 13 11 16 16 C 1.39022 * 120.00645 * 359.71673 * 15 14 13 17 17 C 1.38211 * 120.21941 * 179.76917 * 16 15 14 18 18 C 1.38024 * 120.22405 * 0.51529 * 17 16 15 19 19 C 1.39576 * 120.00764 * 359.74177 * 18 17 16 20 20 C 1.47863 * 120.10915 * 180.02562 * 19 18 17 21 21 O 1.21542 * 120.00420 * 218.98965 * 20 19 18 22 22 N 1.34781 * 119.99839 * 38.98863 * 20 19 18 23 23 C 1.47151 * 120.98307 * 5.51180 * 22 20 19 24 24 C 1.53713 * 108.16366 * 129.43105 * 23 22 20 25 25 O 1.42961 * 109.14831 * 52.53734 * 24 23 22 26 26 C 1.42960 * 114.16577 * 297.28905 * 25 24 23 27 27 C 1.47154 * 120.98253 * 185.78818 * 22 20 19 28 28 C 1.38646 * 120.00421 * 180.02562 * 15 14 13 29 29 H 0.97000 * 120.00209 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46947 * 59.99890 * 9 7 2 31 31 H 1.09001 * 109.46838 * 300.00169 * 9 7 2 32 32 H 0.97000 * 119.99829 * 359.97438 * 10 9 7 33 33 H 1.08999 * 109.47214 * 299.99852 * 13 11 10 34 34 H 1.09003 * 109.47655 * 59.99515 * 13 11 10 35 35 H 0.97004 * 119.99340 * 359.97438 * 14 13 11 36 36 H 1.07998 * 119.88994 * 0.02889 * 16 15 14 37 37 H 1.07999 * 119.88439 * 180.25754 * 17 16 15 38 38 H 1.08008 * 119.99308 * 179.72191 * 18 17 16 39 39 H 1.09000 * 109.67933 * 249.21229 * 23 22 20 40 40 H 1.09000 * 109.68483 * 9.75898 * 23 22 20 41 41 H 1.08996 * 109.65238 * 292.56686 * 24 23 22 42 42 H 1.08998 * 109.48270 * 172.39975 * 24 23 22 43 43 H 1.09001 * 109.51140 * 302.65892 * 26 25 24 44 44 H 1.08994 * 109.55842 * 182.52936 * 26 25 24 45 45 H 1.09005 * 109.68017 * 350.23959 * 27 22 20 46 46 H 1.09002 * 109.67927 * 110.78883 * 27 22 20 47 47 H 1.08007 * 120.10788 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5613 -5.1049 -0.0011 13 6 2.7329 -6.0288 -0.0016 14 7 2.0005 -7.2976 -0.0015 15 6 2.6990 -8.5074 -0.0015 16 6 4.0892 -8.5075 -0.0075 17 6 4.7848 -9.7018 -0.0026 18 6 4.1038 -10.9024 -0.0025 19 6 2.7081 -10.9133 -0.0018 20 6 1.9764 -12.1982 -0.0012 21 8 0.9644 -12.3217 -0.6629 22 7 2.4316 -13.2325 0.7333 23 6 3.5837 -13.0725 1.6347 24 6 3.1917 -13.6222 3.0156 25 8 2.6839 -14.9501 2.8648 26 6 1.4935 -15.0356 2.0777 27 6 1.7950 -14.5568 0.6530 28 6 2.0059 -9.7081 -0.0019 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6246 -2.5571 0.8897 32 1 3.1566 -3.4354 -0.0009 33 1 3.3595 -5.9706 -0.8916 34 1 3.3598 -5.9714 0.8883 35 1 1.0304 -7.2975 -0.0007 36 1 4.6275 -7.5712 -0.0117 37 1 5.8647 -9.6956 -0.0031 38 1 4.6511 -11.8335 -0.0032 39 1 4.4358 -13.6284 1.2435 40 1 3.8407 -12.0165 1.7181 41 1 2.4246 -12.9871 3.4587 42 1 4.0687 -13.6391 3.6625 43 1 0.7203 -14.4057 2.5175 44 1 1.1485 -16.0691 2.0491 45 1 0.8669 -14.4842 0.0859 46 1 2.4701 -15.2596 0.1647 47 1 0.9258 -9.7103 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759769542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = -102.990757 kcal Electronic energy + Delta-G solvation = -29054.201691 eV Core-core repulsion = 24815.055802 eV Total energy + Delta-G solvation = -4239.145889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74752 -40.84637 -39.95115 -39.12473 -36.60937 -36.12948 -35.70864 -34.41105 -32.75368 -32.01615 -31.22423 -29.55226 -28.88717 -27.37791 -25.48140 -24.89007 -24.29446 -23.27820 -22.43020 -21.51519 -20.47573 -19.41365 -18.69630 -17.91949 -17.79123 -17.31370 -17.12304 -16.94408 -16.79299 -16.73026 -16.59946 -16.13138 -16.01412 -15.96787 -15.44663 -15.03486 -14.98798 -14.67563 -14.49331 -14.34447 -14.25866 -13.95384 -13.93620 -13.53574 -13.23089 -12.97054 -12.84513 -12.67982 -12.62533 -12.34257 -12.31333 -12.24896 -11.77901 -11.53140 -11.29169 -11.20245 -10.95742 -10.89231 -10.80853 -9.97806 -9.91474 -9.65576 -8.44266 -8.30124 -6.47094 -0.01848 0.58798 1.43888 1.47623 1.55760 1.57292 1.61511 1.78288 2.06993 2.38254 2.71012 2.82739 2.88637 3.05270 3.36403 3.71243 3.80042 3.92829 3.97128 4.06570 4.15648 4.20942 4.23553 4.30770 4.34964 4.40051 4.48615 4.51235 4.63106 4.64111 4.72124 4.82408 4.89667 4.95135 5.07555 5.20861 5.24026 5.30004 5.40760 5.43504 5.52937 5.62292 5.79209 5.82133 6.06844 6.16003 6.27857 6.57998 6.63906 6.81898 6.93412 7.21314 7.39169 8.81693 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001577 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.588505 B =17746.733426 C =18024.418923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.265 3.735 10 N -0.699 5.699 11 C 0.489 3.511 12 O -0.601 6.601 13 C 0.120 3.880 14 N -0.744 5.744 15 C 0.208 3.792 16 C -0.176 4.176 17 C -0.064 4.064 18 C -0.146 4.146 19 C -0.098 4.098 20 C 0.558 3.442 21 O -0.582 6.582 22 N -0.609 5.609 23 C 0.061 3.939 24 C 0.042 3.958 25 O -0.392 6.392 26 C 0.052 3.948 27 C 0.073 3.927 28 C -0.166 4.166 29 H 0.268 0.732 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.414 0.586 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.401 0.599 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.135 0.865 43 H 0.047 0.953 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.374 -29.116 4.912 34.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.142 3.858 10 N -0.349 5.349 11 C 0.276 3.724 12 O -0.483 6.483 13 C -0.007 4.007 14 N -0.375 5.375 15 C 0.104 3.896 16 C -0.199 4.199 17 C -0.082 4.082 18 C -0.166 4.166 19 C -0.102 4.102 20 C 0.349 3.651 21 O -0.463 6.463 22 N -0.342 5.342 23 C -0.060 4.060 24 C -0.035 4.035 25 O -0.310 6.310 26 C -0.026 4.026 27 C -0.049 4.049 28 C -0.190 4.190 29 H 0.077 0.923 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.250 0.750 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.237 0.763 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.169 0.831 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.152 0.848 43 H 0.065 0.935 44 H 0.147 0.853 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.059 -29.188 4.663 33.639 hybrid contribution -1.116 1.396 -0.314 1.814 sum 14.944 -27.792 4.348 31.853 Atomic orbital electron populations 1.70131 1.08348 1.28639 1.49908 1.26078 0.95745 1.04000 0.93851 0.85196 0.77869 0.76524 0.79568 1.18583 1.21408 1.18518 1.21607 0.94488 0.90407 1.52975 0.89372 1.18570 0.88718 0.84302 0.94199 1.46073 1.11562 1.05131 1.72087 1.21337 0.89747 0.85407 0.75909 1.90652 1.19489 1.85248 1.52900 1.21156 0.92904 0.80614 1.06072 1.44556 1.08939 1.01942 1.82050 1.17804 0.92477 0.84586 0.94717 1.21236 0.90756 1.00989 1.06884 1.21252 1.01515 0.90210 0.95205 1.21366 0.91024 1.00231 1.03981 1.19452 0.95027 0.90992 1.04682 1.18809 0.83366 0.84381 0.78573 1.90754 1.26679 1.83859 1.45002 1.48136 1.33299 1.09962 1.42819 1.23172 0.88056 1.05060 0.89754 1.23277 1.00741 0.83329 0.96126 1.87953 1.42872 1.28430 1.71766 1.23026 0.86927 1.03739 0.88871 1.22432 1.00113 0.83229 0.99136 1.20488 0.99180 0.90902 1.08395 0.92299 0.99444 0.99360 0.74981 0.86364 0.86056 0.76306 0.83158 0.81473 0.83092 0.87924 0.86536 0.93383 0.84754 0.93508 0.85304 0.89584 0.88817 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 41.15 29.54 68.60 2.03 43.18 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.56 -29.18 9.28 25.60 0.24 -28.94 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.03 5.43 85.63 0.46 14.49 16 10 N -0.70 -27.04 5.55 -466.80 -2.59 -29.63 16 11 C 0.49 17.90 7.90 87.66 0.69 18.59 16 12 O -0.60 -28.36 15.67 -3.01 -0.05 -28.41 16 13 C 0.12 2.76 5.39 85.63 0.46 3.22 16 14 N -0.74 -19.48 5.70 -343.23 -1.96 -21.43 16 15 C 0.21 4.71 6.65 38.17 0.25 4.96 16 16 C -0.18 -2.73 9.31 22.45 0.21 -2.52 16 17 C -0.06 -0.71 10.02 22.21 0.22 -0.49 16 18 C -0.15 -1.98 7.41 22.54 0.17 -1.82 16 19 C -0.10 -2.11 5.16 -20.11 -0.10 -2.21 16 20 C 0.56 13.65 7.35 86.79 0.64 14.29 16 21 O -0.58 -19.38 16.38 -3.85 -0.06 -19.45 16 22 N -0.61 -10.35 3.01 -819.91 -2.47 -12.82 16 23 C 0.06 0.59 5.04 86.50 0.44 1.02 16 24 C 0.04 0.41 7.00 72.22 0.51 0.92 16 25 O -0.39 -5.29 10.74 -148.98 -1.60 -6.89 16 26 C 0.05 0.63 6.98 72.08 0.50 1.13 16 27 C 0.07 1.07 6.65 86.35 0.57 1.65 16 28 C -0.17 -4.23 9.48 22.67 0.21 -4.02 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.41 12.44 8.32 -92.71 -0.77 11.67 16 33 H 0.12 2.06 7.94 -2.39 -0.02 2.04 16 34 H 0.12 2.04 7.95 -2.39 -0.02 2.02 16 35 H 0.40 12.61 7.45 -92.71 -0.69 11.92 16 36 H 0.15 1.62 6.71 -2.91 -0.02 1.60 16 37 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.15 1.24 6.40 -2.91 -0.02 1.22 16 39 H 0.10 0.58 8.02 -2.39 -0.02 0.56 16 40 H 0.12 1.00 4.92 -2.39 -0.01 0.99 16 41 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 1.58 7.06 -2.38 -0.02 1.56 16 46 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.10 3.05 8.05 -2.91 -0.02 3.03 16 Total: -1.00 -81.56 389.47 -0.92 -82.48 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.44 Total: 27.25 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 5.94 Total: 20.90 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.73 Total: -119.07 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -1.71 Total: -54.74 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -81.56 -0.92 -82.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759769542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds