Wall clock time and date at job start Wed Apr 1 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.40103 * 120.00076 * 180.02562 * 18 16 15 20 20 C 1.34777 * 120.00050 * 180.02562 * 19 18 16 21 21 O 1.21589 * 119.99939 * 179.97438 * 20 19 18 22 22 N 1.34771 * 120.00185 * 359.97438 * 20 19 18 23 23 C 1.46493 * 120.00298 * 180.02562 * 22 20 19 24 24 C 1.54269 * 110.03444 * 272.90879 * 23 22 20 25 25 C 1.54958 * 104.16058 * 217.13405 * 24 23 22 26 26 C 1.54881 * 102.77966 * 37.88711 * 25 24 23 27 27 C 1.53871 * 110.03542 * 155.68919 * 23 22 20 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 36 36 H 0.97004 * 119.99844 * 359.97438 * 19 18 16 37 37 H 0.97008 * 119.99753 * 0.02562 * 22 20 19 38 38 H 1.09006 * 110.01799 * 34.29502 * 23 22 20 39 39 H 1.09001 * 110.48257 * 335.78359 * 24 23 22 40 40 H 1.09007 * 110.48919 * 98.42124 * 24 23 22 41 41 H 1.08993 * 110.72072 * 279.56884 * 25 24 23 42 42 H 1.09003 * 110.92268 * 156.29361 * 25 24 23 43 43 H 1.08997 * 110.49061 * 203.40189 * 26 25 24 44 44 H 1.09001 * 110.60317 * 80.81443 * 26 25 24 45 45 H 1.09005 * 110.03364 * 238.56932 * 27 23 22 46 46 H 1.08997 * 110.03263 * 0.02562 * 27 23 22 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 7 0.4416 -9.5434 -2.3079 20 6 -0.1633 -10.7409 -2.4368 21 8 -0.3537 -11.2099 -3.5424 22 7 -0.5572 -11.4185 -1.3405 23 6 -1.2142 -12.7203 -1.4806 24 6 -2.7342 -12.5285 -1.6616 25 6 -3.3613 -13.7089 -0.8776 26 6 -2.4356 -13.8296 0.3583 27 6 -1.0242 -13.5476 -0.1972 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 0.3769 -9.4904 -0.2449 36 1 0.7248 -9.0556 -3.0970 37 1 -0.4057 -11.0441 -0.4585 38 1 -0.8013 -13.2566 -2.3351 39 1 -3.0518 -11.5765 -1.2361 40 1 -3.0029 -12.5845 -2.7165 41 1 -3.3350 -14.6230 -1.4707 42 1 -4.3821 -13.4762 -0.5743 43 1 -2.4870 -14.8347 0.7768 44 1 -2.7037 -13.0894 1.1121 45 1 -0.5198 -14.4857 -0.4288 46 1 -0.4436 -12.9803 0.5302 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760382745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:38 Heat of formation + Delta-G solvation = -64.157463 kcal Electronic energy + Delta-G solvation = -29037.770298 eV Core-core repulsion = 24800.308348 eV Total energy + Delta-G solvation = -4237.461951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77832 -40.95902 -40.30557 -38.81391 -38.20705 -36.82650 -34.54831 -34.34375 -33.68360 -31.98169 -30.80210 -29.62290 -28.56002 -28.12020 -27.20316 -23.44610 -23.09032 -22.90333 -21.97427 -21.52480 -21.23589 -20.19560 -19.42070 -18.78799 -18.68935 -17.28258 -17.07092 -16.98678 -16.69417 -16.46285 -16.18309 -16.11150 -15.92349 -15.77775 -15.49726 -15.14833 -14.86690 -14.75923 -14.33599 -14.23536 -13.99298 -13.60987 -13.18194 -12.98303 -12.90901 -12.55407 -12.49373 -12.42779 -12.38056 -12.20132 -12.07916 -11.99128 -11.93284 -11.86939 -11.66892 -11.42804 -11.21355 -11.16677 -10.80233 -10.28383 -9.63335 -9.40310 -8.95845 -8.46749 -6.14779 0.41936 0.76723 0.91472 1.34348 1.42910 1.43436 1.52765 1.93433 1.96699 2.17764 2.82388 3.14187 3.44586 3.50952 3.62585 3.72779 3.82327 4.01224 4.13198 4.15418 4.34879 4.46519 4.47377 4.52774 4.56669 4.60019 4.64883 4.68170 4.77385 4.79993 4.91543 5.05361 5.07548 5.12262 5.14442 5.25649 5.29935 5.31072 5.35472 5.45199 5.51111 5.62751 5.67177 5.74653 5.77365 6.03990 6.22981 6.31634 6.60981 6.98335 7.19751 7.37138 7.80414 8.76939 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.001738 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.319469 B =16105.335084 C =16546.492433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.412 4.412 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.108 3.892 11 C -0.246 4.246 12 C -0.077 4.077 13 C -0.176 4.176 14 C -0.029 4.029 15 C -0.076 4.076 16 C 0.519 3.481 17 O -0.569 6.569 18 N -0.513 5.513 19 N -0.538 5.538 20 C 0.711 3.289 21 O -0.618 6.618 22 N -0.720 5.720 23 C 0.153 3.847 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.189 4.189 29 H 0.272 0.728 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.439 0.561 36 H 0.435 0.565 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -29.763 7.091 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.058 3.942 11 C -0.265 4.265 12 C -0.095 4.095 13 C -0.194 4.194 14 C -0.030 4.030 15 C -0.117 4.117 16 C 0.306 3.694 17 O -0.445 6.445 18 N -0.268 5.268 19 N -0.291 5.291 20 C 0.410 3.590 21 O -0.496 6.496 22 N -0.378 5.378 23 C 0.048 3.952 24 C -0.178 4.178 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.162 4.162 28 C -0.209 4.209 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.154 0.846 35 H 0.284 0.716 36 H 0.279 0.721 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.717 -29.649 5.691 30.199 hybrid contribution 0.077 1.577 -0.268 1.601 sum -0.640 -28.072 5.424 28.599 Atomic orbital electron populations 1.70194 1.07979 1.28636 1.49218 1.26591 0.96893 1.02720 0.96011 0.84524 0.78200 0.74862 0.78572 1.17552 1.19552 1.19063 1.21840 0.92448 0.81535 1.52977 0.88297 1.83932 1.35909 1.12571 1.81810 1.19928 0.91648 0.88074 0.94549 1.21312 0.93247 1.00260 1.11688 1.21141 1.00197 0.91646 0.96517 1.21027 0.93610 0.98007 1.06763 1.19139 0.93634 0.92765 0.97430 1.20660 1.05411 0.93491 0.92103 1.21406 0.76222 0.78842 0.92899 1.90820 1.51682 1.60403 1.41575 1.44845 1.62887 1.20340 0.98741 1.44581 1.64791 1.19174 1.00570 1.15854 0.78238 0.79515 0.85354 1.90997 1.63807 1.68250 1.26505 1.45238 1.63665 1.21833 1.07031 1.21677 0.91915 0.81682 0.99896 1.22819 0.94851 0.99853 1.00255 1.22487 0.99367 0.97490 0.96731 1.22364 0.93400 1.02823 0.97210 1.22432 0.98679 1.00208 0.94913 1.20279 0.99497 0.90393 1.10699 0.91905 0.86799 0.83921 0.83027 0.82226 0.84563 0.71606 0.72070 0.75404 0.90931 0.91353 0.93097 0.91138 0.90852 0.90200 0.90600 0.89861 0.89156 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.55 13.67 21.61 0.30 -57.25 16 2 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.41 -24.60 9.49 67.92 0.64 -23.95 16 8 H 0.10 5.46 5.21 -2.91 -0.02 5.45 16 9 O -0.24 -14.52 9.76 -22.74 -0.22 -14.74 16 10 C 0.11 5.50 6.65 22.58 0.15 5.65 16 11 C -0.25 -11.01 9.17 22.39 0.21 -10.81 16 12 C -0.08 -2.66 10.04 22.25 0.22 -2.44 16 13 C -0.18 -5.17 9.70 22.30 0.22 -4.96 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 15 C -0.08 -1.28 5.83 29.10 0.17 -1.11 16 16 C 0.52 11.29 7.94 87.66 0.70 11.98 16 17 O -0.57 -19.59 15.87 -3.04 -0.05 -19.63 16 18 N -0.51 -7.33 6.26 -173.54 -1.09 -8.42 16 19 N -0.54 -11.00 6.26 -184.75 -1.16 -12.16 16 20 C 0.71 15.02 8.67 179.06 1.55 16.58 16 21 O -0.62 -18.70 16.85 -4.00 -0.07 -18.77 16 22 N -0.72 -8.70 5.00 -454.36 -2.27 -10.97 16 23 C 0.15 1.82 3.23 45.72 0.15 1.97 16 24 C -0.14 -1.78 6.54 31.69 0.21 -1.57 16 25 C -0.12 -1.00 6.91 31.91 0.22 -0.78 16 26 C -0.12 -0.58 6.83 31.67 0.22 -0.36 16 27 C -0.12 -0.66 6.57 31.32 0.21 -0.45 16 28 C -0.19 -7.96 9.65 22.39 0.22 -7.75 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 31 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.16 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.14 1.59 8.08 -2.39 -0.02 1.57 16 35 H 0.44 1.99 6.70 -213.31 -1.43 0.56 16 36 H 0.44 10.86 8.10 -213.31 -1.73 9.13 16 37 H 0.41 1.99 6.23 -92.70 -0.58 1.41 16 38 H 0.07 1.21 7.59 -2.38 -0.02 1.19 16 39 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 40 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.09 0.17 7.61 -2.39 -0.02 0.16 16 47 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -90.61 394.24 0.22 -90.39 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -2.70 Total: 25.67 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 5.45 Total: -19.96 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -4.22 Total: -88.79 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.34 Total: -53.14 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -90.61 0.22 -90.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760382745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.236 kcal (2) G-P(sol) polarization free energy of solvation -90.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds