Wall clock time and date at job start Wed Apr 1 2020 04:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48504 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47473 * 300.00069 * 3 2 1 6 6 H 1.48503 * 109.46904 * 60.00072 * 3 2 1 7 7 C 1.38651 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00367 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.35745 * 116.99985 * 185.40601 * 9 7 2 11 11 C 1.38949 * 120.03598 * 5.92467 * 10 9 7 12 12 C 1.38120 * 120.07415 * 180.02562 * 11 10 9 13 13 C 1.38208 * 120.13672 * 359.97438 * 12 11 10 14 14 C 1.38920 * 120.06715 * 359.95969 * 13 12 11 15 15 N 1.39938 * 120.03452 * 180.02562 * 14 13 12 16 16 C 1.34779 * 119.99778 * 146.43457 * 15 14 13 17 17 O 1.21583 * 120.00107 * 354.73963 * 16 15 14 18 18 N 1.34787 * 119.99659 * 174.46956 * 16 15 14 19 19 C 1.46500 * 119.99567 * 180.27390 * 18 16 15 20 20 H 1.08997 * 109.47438 * 324.99631 * 19 18 16 21 21 C 1.52998 * 109.47195 * 84.99958 * 19 18 16 22 22 C 1.53002 * 109.47268 * 179.97438 * 21 19 18 23 23 C 1.53003 * 109.46915 * 299.99967 * 22 21 19 24 24 C 1.52998 * 109.47126 * 59.99946 * 23 22 21 25 25 C 1.53002 * 109.47268 * 299.99838 * 24 23 22 26 26 H 1.08997 * 109.47189 * 300.00219 * 25 24 23 27 27 C 1.50700 * 109.47136 * 180.02562 * 25 24 23 28 28 N 1.34771 * 119.99844 * 60.00288 * 27 25 24 29 29 O 1.21279 * 120.00033 * 239.99930 * 27 25 24 30 30 C 1.38733 * 120.03350 * 186.14596 * 10 9 7 31 31 H 0.97000 * 120.00155 * 0.02562 * 1 2 3 32 32 H 1.08006 * 119.96523 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.93781 * 179.97438 * 12 11 10 34 34 H 1.08003 * 119.96693 * 179.97438 * 13 12 11 35 35 H 0.96996 * 120.00431 * 326.43136 * 15 14 13 36 36 H 0.96994 * 119.99673 * 0.27135 * 18 16 15 37 37 H 1.09002 * 109.47008 * 299.99737 * 21 19 18 38 38 H 1.08997 * 109.47194 * 59.99524 * 21 19 18 39 39 H 1.08998 * 109.46688 * 59.99944 * 22 21 19 40 40 H 1.08993 * 109.47174 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.46627 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47039 * 299.99905 * 23 22 21 43 43 H 1.08997 * 109.47194 * 60.00054 * 24 23 22 44 44 H 1.09002 * 109.47008 * 179.97438 * 24 23 22 45 45 H 0.97004 * 120.00352 * 359.97438 * 28 27 25 46 46 H 0.97007 * 120.00226 * 179.97438 * 28 27 25 47 47 H 1.08005 * 120.07359 * 0.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0694 -3.5042 0.1129 11 6 3.4371 -3.4275 0.3455 12 6 4.1855 -4.5826 0.4605 13 6 3.5769 -5.8181 0.3452 14 6 2.2096 -5.9016 0.1140 15 7 1.5940 -7.1529 -0.0022 16 6 0.3320 -7.3264 0.4379 17 8 -0.2377 -6.4248 1.0215 18 7 -0.3005 -8.4977 0.2262 19 6 -1.6744 -8.6843 0.6993 20 1 -1.8102 -8.1512 1.6402 21 6 -2.6514 -8.1364 -0.3429 22 6 -4.0863 -8.3318 0.1509 23 6 -4.3531 -9.8230 0.3658 24 6 -3.3761 -10.3708 1.4080 25 6 -1.9411 -10.1754 0.9142 26 1 -1.8050 -10.7082 -0.0268 27 6 -0.9788 -10.7156 1.9405 28 7 -1.0281 -12.0158 2.2918 29 8 -0.1600 -9.9803 2.4502 30 6 1.4562 -4.7428 -0.0080 31 1 -0.4850 0.8400 -0.0004 32 1 3.9157 -2.4635 0.4357 33 1 5.2485 -4.5204 0.6410 34 1 4.1648 -6.7196 0.4352 35 1 2.0755 -7.8953 -0.3994 36 1 0.1541 -9.2170 -0.2394 37 1 -2.4611 -7.0742 -0.4964 38 1 -2.5156 -8.6695 -1.2839 39 1 -4.2224 -7.7989 1.0919 40 1 -4.7823 -7.9411 -0.5914 41 1 -5.3753 -9.9620 0.7181 42 1 -4.2170 -10.3558 -0.5752 43 1 -3.5122 -9.8380 2.3491 44 1 -3.5664 -11.4330 1.5615 45 1 -1.6832 -12.6039 1.8843 46 1 -0.4084 -12.3637 2.9521 47 1 0.3939 -4.8051 -0.1928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762213908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:53 Heat of formation + Delta-G solvation = -76.476970 kcal Electronic energy + Delta-G solvation = -30475.215726 eV Core-core repulsion = 26237.219562 eV Total energy + Delta-G solvation = -4237.996165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86607 -39.79219 -38.58292 -37.77849 -36.39948 -34.36011 -33.89469 -33.70452 -32.13838 -31.20368 -29.95139 -29.11127 -27.89761 -25.18627 -24.17979 -23.27231 -21.96344 -21.23960 -20.87824 -20.47056 -20.06793 -18.31519 -18.13231 -17.67007 -16.99943 -16.87737 -16.22119 -15.26565 -15.08701 -15.01793 -14.92165 -14.69320 -14.51015 -14.16874 -14.06889 -13.81459 -13.66280 -13.44866 -13.37040 -12.88474 -12.69046 -12.60212 -12.37901 -11.68758 -11.65278 -11.54503 -11.38696 -11.21566 -11.04432 -10.94569 -10.88525 -10.65332 -10.57606 -10.36190 -10.07271 -9.99365 -9.77733 -9.57371 -9.14517 -8.87629 -8.71460 -7.49585 -7.03668 -6.32212 -3.91031 2.24829 2.34636 2.48773 2.84840 3.14594 3.20068 3.21486 3.27202 3.60228 4.05444 4.15892 4.26943 4.32146 4.56820 4.73703 4.76775 4.83071 4.91912 4.96091 5.13162 5.18410 5.23814 5.36530 5.45037 5.54009 5.68035 5.71164 5.74971 5.85350 5.91249 5.97902 6.13715 6.18887 6.24012 6.38126 6.43554 6.50456 6.62933 6.69992 6.96077 7.01101 7.16788 7.20280 7.40291 7.47111 7.61158 7.96580 7.97223 8.13182 8.24708 8.92427 9.13004 9.86490 10.86129 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.002469 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.661249 B =11339.223026 C =12769.722186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.037 3.963 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.169 3.831 11 C -0.248 4.248 12 C -0.058 4.058 13 C -0.238 4.238 14 C 0.200 3.800 15 N -0.683 5.683 16 C 0.707 3.293 17 O -0.560 6.560 18 N -0.733 5.733 19 C 0.187 3.813 20 H 0.096 0.904 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.107 4.107 25 C -0.116 4.116 26 H 0.102 0.898 27 C 0.513 3.487 28 N -0.859 5.859 29 O -0.519 6.519 30 C -0.187 4.187 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.399 0.601 36 H 0.389 0.611 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.399 0.601 46 H 0.400 0.600 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 -27.445 -1.180 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.115 3.885 11 C -0.268 4.268 12 C -0.077 4.077 13 C -0.259 4.259 14 C 0.106 3.894 15 N -0.330 5.330 16 C 0.408 3.592 17 O -0.435 6.435 18 N -0.387 5.387 19 C 0.081 3.919 20 H 0.114 0.886 21 C -0.171 4.171 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.145 4.145 25 C -0.138 4.138 26 H 0.120 0.880 27 C 0.297 3.703 28 N -0.424 5.424 29 O -0.393 6.393 30 C -0.209 4.209 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.233 0.767 36 H 0.221 0.779 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.227 0.773 46 H 0.231 0.769 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.103 -25.761 -0.433 26.478 hybrid contribution 0.978 -0.560 -0.251 1.154 sum -5.125 -26.320 -0.684 26.824 Atomic orbital electron populations 1.70069 1.05926 1.27347 1.46383 1.25288 0.95821 0.98770 0.96773 0.85659 0.79129 0.80542 0.78134 1.19125 1.20247 1.20233 1.21377 0.91785 0.80887 1.52503 0.89045 1.84010 1.34115 1.11329 1.78442 1.19119 0.90028 0.87711 0.91688 1.21155 0.94292 0.98935 1.12369 1.20472 0.98281 0.91659 0.97327 1.20240 0.93023 0.97468 1.15206 1.16937 0.91132 0.82863 0.98485 1.42473 1.13940 1.11940 1.64654 1.15824 0.81111 0.82984 0.79326 1.91009 1.65962 1.41240 1.45261 1.44887 1.15188 1.15213 1.63364 1.20499 0.80137 0.92368 0.98929 0.88586 1.22001 0.94029 1.02949 0.98141 1.21533 0.96302 0.95821 1.02191 1.21567 0.98805 0.96475 0.98753 1.21507 0.91495 1.01536 0.99986 1.21711 0.95670 0.97727 0.98740 0.88029 1.20636 0.84578 0.82069 0.82996 1.43922 1.40426 1.10900 1.47137 1.90863 1.37579 1.57101 1.53732 1.20030 1.00765 0.88691 1.11391 0.92199 0.85547 0.87152 0.87537 0.76694 0.77878 0.90220 0.91807 0.91326 0.91299 0.91307 0.91620 0.90810 0.91111 0.77311 0.76912 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.55 13.67 55.48 0.76 -25.79 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.39 -11.46 9.44 30.89 0.29 -11.17 16 8 H 0.09 2.48 5.29 -52.49 -0.28 2.21 16 9 O -0.18 -5.40 9.76 0.05 0.00 -5.40 16 10 C 0.17 4.49 6.64 -39.14 -0.26 4.23 16 11 C -0.25 -5.79 9.13 -39.36 -0.36 -6.15 16 12 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 13 C -0.24 -4.47 9.96 -39.34 -0.39 -4.86 16 14 C 0.20 4.10 6.27 -83.71 -0.52 3.58 16 15 N -0.68 -11.32 5.35 -14.24 -0.08 -11.40 16 16 C 0.71 12.59 8.26 -86.91 -0.72 11.87 16 17 O -0.56 -12.85 13.73 5.29 0.07 -12.78 16 18 N -0.73 -9.25 3.88 -58.67 -0.23 -9.48 16 19 C 0.19 2.12 1.46 -67.93 -0.10 2.02 16 20 H 0.10 1.46 7.53 -51.93 -0.39 1.07 16 21 C -0.13 -1.38 5.49 -26.73 -0.15 -1.52 16 22 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 23 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 24 C -0.11 -0.58 5.10 -26.73 -0.14 -0.72 16 25 C -0.12 -0.83 2.11 -91.77 -0.19 -1.02 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 C 0.51 4.61 7.26 -10.99 -0.08 4.53 16 28 N -0.86 -4.08 8.77 31.22 0.27 -3.81 16 29 O -0.52 -7.55 16.04 5.56 0.09 -7.46 16 30 C -0.19 -4.60 8.59 -39.21 -0.34 -4.94 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.13 2.92 5.71 -52.48 -0.30 2.62 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.40 4.89 8.83 -40.82 -0.36 4.53 16 36 H 0.39 3.67 8.62 -40.82 -0.35 3.32 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.21 7.56 -51.93 -0.39 -0.18 16 45 H 0.40 0.62 8.25 -40.82 -0.34 0.28 16 46 H 0.40 1.79 8.93 -40.82 -0.36 1.43 16 47 H 0.13 3.40 6.45 -52.48 -0.34 3.06 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -39.75 385.89 -8.56 -48.30 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.48 Total: 12.28 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -3.76 Total: -6.68 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.73 Total: -50.47 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.16 Total: -25.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.75 -8.56 -48.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762213908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.173 kcal (2) G-P(sol) polarization free energy of solvation -39.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds