Wall clock time and date at job start Wed Apr 1 2020 04:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48504 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47473 * 300.00069 * 3 2 1 6 6 H 1.48503 * 109.46904 * 60.00072 * 3 2 1 7 7 C 1.38651 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00367 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.35745 * 116.99985 * 185.40601 * 9 7 2 11 11 C 1.38949 * 120.03598 * 5.92467 * 10 9 7 12 12 C 1.38120 * 120.07415 * 180.02562 * 11 10 9 13 13 C 1.38208 * 120.13672 * 359.97438 * 12 11 10 14 14 C 1.38920 * 120.06715 * 359.95969 * 13 12 11 15 15 N 1.39938 * 120.03452 * 180.02562 * 14 13 12 16 16 C 1.34779 * 119.99778 * 146.43457 * 15 14 13 17 17 O 1.21583 * 120.00107 * 354.73963 * 16 15 14 18 18 N 1.34787 * 119.99659 * 174.46956 * 16 15 14 19 19 C 1.46500 * 119.99567 * 180.27390 * 18 16 15 20 20 H 1.08997 * 109.47438 * 324.99631 * 19 18 16 21 21 C 1.52998 * 109.47195 * 84.99958 * 19 18 16 22 22 C 1.53002 * 109.47268 * 179.97438 * 21 19 18 23 23 C 1.53003 * 109.46915 * 299.99967 * 22 21 19 24 24 C 1.52998 * 109.47126 * 59.99946 * 23 22 21 25 25 C 1.53002 * 109.47268 * 299.99838 * 24 23 22 26 26 H 1.08997 * 109.47189 * 300.00219 * 25 24 23 27 27 C 1.50700 * 109.47136 * 180.02562 * 25 24 23 28 28 N 1.34771 * 119.99844 * 60.00288 * 27 25 24 29 29 O 1.21279 * 120.00033 * 239.99930 * 27 25 24 30 30 C 1.38733 * 120.03350 * 186.14596 * 10 9 7 31 31 H 0.97000 * 120.00155 * 0.02562 * 1 2 3 32 32 H 1.08006 * 119.96523 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.93781 * 179.97438 * 12 11 10 34 34 H 1.08003 * 119.96693 * 179.97438 * 13 12 11 35 35 H 0.96996 * 120.00431 * 326.43136 * 15 14 13 36 36 H 0.96994 * 119.99673 * 0.27135 * 18 16 15 37 37 H 1.09002 * 109.47008 * 299.99737 * 21 19 18 38 38 H 1.08997 * 109.47194 * 59.99524 * 21 19 18 39 39 H 1.08998 * 109.46688 * 59.99944 * 22 21 19 40 40 H 1.08993 * 109.47174 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.46627 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47039 * 299.99905 * 23 22 21 43 43 H 1.08997 * 109.47194 * 60.00054 * 24 23 22 44 44 H 1.09002 * 109.47008 * 179.97438 * 24 23 22 45 45 H 0.97004 * 120.00352 * 359.97438 * 28 27 25 46 46 H 0.97007 * 120.00226 * 179.97438 * 28 27 25 47 47 H 1.08005 * 120.07359 * 0.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0694 -3.5042 0.1129 11 6 3.4371 -3.4275 0.3455 12 6 4.1855 -4.5826 0.4605 13 6 3.5769 -5.8181 0.3452 14 6 2.2096 -5.9016 0.1140 15 7 1.5940 -7.1529 -0.0022 16 6 0.3320 -7.3264 0.4379 17 8 -0.2377 -6.4248 1.0215 18 7 -0.3005 -8.4977 0.2262 19 6 -1.6744 -8.6843 0.6993 20 1 -1.8102 -8.1512 1.6402 21 6 -2.6514 -8.1364 -0.3429 22 6 -4.0863 -8.3318 0.1509 23 6 -4.3531 -9.8230 0.3658 24 6 -3.3761 -10.3708 1.4080 25 6 -1.9411 -10.1754 0.9142 26 1 -1.8050 -10.7082 -0.0268 27 6 -0.9788 -10.7156 1.9405 28 7 -1.0281 -12.0158 2.2918 29 8 -0.1600 -9.9803 2.4502 30 6 1.4562 -4.7428 -0.0080 31 1 -0.4850 0.8400 -0.0004 32 1 3.9157 -2.4635 0.4357 33 1 5.2485 -4.5204 0.6410 34 1 4.1648 -6.7196 0.4352 35 1 2.0755 -7.8953 -0.3994 36 1 0.1541 -9.2170 -0.2394 37 1 -2.4611 -7.0742 -0.4964 38 1 -2.5156 -8.6695 -1.2839 39 1 -4.2224 -7.7989 1.0919 40 1 -4.7823 -7.9411 -0.5914 41 1 -5.3753 -9.9620 0.7181 42 1 -4.2170 -10.3558 -0.5752 43 1 -3.5122 -9.8380 2.3491 44 1 -3.5664 -11.4330 1.5615 45 1 -1.6832 -12.6039 1.8843 46 1 -0.4084 -12.3637 2.9521 47 1 0.3939 -4.8051 -0.1928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762213908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:52 Heat of formation + Delta-G solvation = -109.644513 kcal Electronic energy + Delta-G solvation = -30476.653979 eV Core-core repulsion = 26237.219562 eV Total energy + Delta-G solvation = -4239.434417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95272 -41.08169 -40.28364 -38.75423 -38.07782 -35.54268 -35.33807 -34.53077 -34.24962 -31.86370 -31.31346 -30.67805 -29.37372 -27.32041 -24.95479 -24.41932 -23.40430 -22.90618 -21.84452 -21.53449 -20.95686 -19.96997 -19.55191 -18.95226 -18.35913 -17.63092 -17.43062 -16.78408 -16.57748 -16.50769 -16.02271 -15.93898 -15.81107 -15.53446 -15.48403 -15.21477 -14.87719 -14.75349 -14.45059 -14.27361 -14.08045 -13.62130 -13.53119 -13.40911 -13.17004 -12.91135 -12.68562 -12.37676 -12.36542 -12.28254 -12.08074 -11.93470 -11.64161 -11.46974 -11.35655 -11.25393 -10.97887 -10.85477 -10.76277 -10.58815 -10.05709 -9.29256 -8.83028 -8.46046 -6.15764 0.48537 0.71365 1.34065 1.44039 1.53880 1.55778 1.67743 2.12023 2.18749 2.57503 2.84891 3.09245 3.19245 3.44004 3.58501 3.76850 3.90914 4.10968 4.14510 4.19541 4.30590 4.34161 4.37394 4.40821 4.43254 4.45190 4.70701 4.73875 4.80338 4.91329 4.96340 5.06859 5.11190 5.13801 5.17000 5.24682 5.34245 5.39740 5.46561 5.49695 5.54569 5.64239 5.74853 5.94290 5.99306 6.04077 6.22815 6.51962 6.97357 7.02187 7.41820 7.54544 7.80952 8.78435 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.002469 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.661249 B =11339.223026 C =12769.722186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.029 4.029 3 Si 1.026 2.974 4 H -0.246 1.246 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.107 0.893 9 O -0.236 6.236 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.046 4.046 13 C -0.209 4.209 14 C 0.205 3.795 15 N -0.668 5.668 16 C 0.699 3.301 17 O -0.621 6.621 18 N -0.708 5.708 19 C 0.183 3.817 20 H 0.045 0.955 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.105 4.105 25 C -0.104 4.104 26 H 0.144 0.856 27 C 0.512 3.488 28 N -0.834 5.834 29 O -0.585 6.585 30 C -0.213 4.213 31 H 0.272 0.728 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.424 0.576 36 H 0.409 0.591 37 H 0.028 0.972 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.112 0.888 45 H 0.419 0.581 46 H 0.405 0.595 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -31.821 -1.965 32.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.226 4.226 3 Si 0.844 3.156 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.124 0.876 9 O -0.143 6.143 10 C 0.078 3.922 11 C -0.277 4.277 12 C -0.064 4.064 13 C -0.230 4.230 14 C 0.110 3.890 15 N -0.317 5.317 16 C 0.399 3.601 17 O -0.500 6.500 18 N -0.362 5.362 19 C 0.077 3.923 20 H 0.064 0.936 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.125 4.125 26 H 0.161 0.839 27 C 0.297 3.703 28 N -0.398 5.398 29 O -0.464 6.464 30 C -0.235 4.235 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.263 0.737 36 H 0.246 0.754 37 H 0.047 0.953 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.251 0.749 46 H 0.236 0.764 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.865 -30.337 -1.258 30.609 hybrid contribution 0.309 0.416 0.026 0.519 sum -3.557 -29.921 -1.233 30.157 Atomic orbital electron populations 1.70243 1.08336 1.28706 1.49137 1.26752 0.96896 1.03087 0.95846 0.84446 0.78349 0.74290 0.78512 1.16936 1.19159 1.19483 1.21962 0.92689 0.81252 1.52951 0.87607 1.83974 1.36173 1.12744 1.81390 1.19633 0.91768 0.87198 0.93587 1.21307 0.92965 1.00686 1.12709 1.21020 1.00397 0.90258 0.94747 1.20842 0.91986 0.99326 1.10875 1.17105 0.92017 0.82959 0.96940 1.42262 1.13756 1.11362 1.64343 1.16166 0.81297 0.83657 0.78964 1.90988 1.67327 1.43691 1.47981 1.44714 1.15491 1.13903 1.62112 1.20582 0.79419 0.95452 0.96864 0.93615 1.21931 0.95354 1.00045 0.99240 1.21562 0.94773 0.98669 1.01019 1.21543 0.99549 0.93579 1.00007 1.21574 0.90017 1.03769 0.98909 1.21682 0.96385 0.94182 1.00280 0.83878 1.20894 0.83901 0.82808 0.82711 1.43702 1.40275 1.09606 1.46217 1.90850 1.40382 1.58942 1.56193 1.20021 0.99660 0.90194 1.13630 0.91908 0.85728 0.82083 0.82200 0.73671 0.75450 0.95326 0.88978 0.93784 0.90759 0.89816 0.89030 0.93041 0.86969 0.74911 0.76376 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.15 13.67 21.61 0.30 -60.85 16 2 C -0.03 -1.78 5.49 84.83 0.47 -1.31 16 3 Si 1.03 45.43 29.55 68.60 2.03 47.46 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.41 -25.84 9.44 67.92 0.64 -25.20 16 8 H 0.11 6.00 5.29 -2.91 -0.02 5.98 16 9 O -0.24 -15.86 9.76 -22.75 -0.22 -16.08 16 10 C 0.13 7.34 6.64 22.56 0.15 7.49 16 11 C -0.26 -12.12 9.13 22.41 0.20 -11.91 16 12 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 13 C -0.21 -7.11 9.96 22.43 0.22 -6.88 16 14 C 0.21 8.40 6.27 38.13 0.24 8.64 16 15 N -0.67 -21.81 5.35 -317.22 -1.70 -23.51 16 16 C 0.70 26.11 8.26 179.05 1.48 27.59 16 17 O -0.62 -31.38 13.73 -3.98 -0.05 -31.44 16 18 N -0.71 -18.09 3.88 -457.80 -1.77 -19.86 16 19 C 0.18 4.33 1.46 44.99 0.07 4.39 16 20 H 0.05 1.56 7.53 -2.39 -0.02 1.55 16 21 C -0.13 -2.79 5.49 30.59 0.17 -2.62 16 22 C -0.12 -2.08 5.92 30.60 0.18 -1.89 16 23 C -0.11 -0.89 5.92 30.59 0.18 -0.71 16 24 C -0.10 -0.85 5.10 30.59 0.16 -0.70 16 25 C -0.10 -1.24 2.11 -11.54 -0.02 -1.26 16 26 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 27 C 0.51 8.24 7.26 87.66 0.64 8.88 16 28 N -0.83 -5.11 8.77 -173.54 -1.52 -6.63 16 29 O -0.58 -17.02 16.04 -3.03 -0.05 -17.07 16 30 C -0.21 -11.26 8.59 22.51 0.19 -11.07 16 31 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 32 H 0.12 5.83 5.71 -2.91 -0.02 5.81 16 33 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.42 9.26 8.83 -92.71 -0.82 8.44 16 36 H 0.41 6.96 8.62 -92.71 -0.80 6.16 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.11 0.07 7.56 -2.39 -0.02 0.05 16 45 H 0.42 -0.73 8.25 -92.71 -0.76 -1.50 16 46 H 0.41 2.45 8.93 -92.70 -0.83 1.63 16 47 H 0.09 5.53 6.45 -2.91 -0.02 5.51 16 Total: -1.00 -102.77 385.89 0.04 -102.73 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -2.15 Total: 33.24 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.18 Total: -8.00 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.70 Total: -110.85 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.33 Total: -64.59 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -102.77 0.04 -102.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762213908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.917 kcal (2) G-P(sol) polarization free energy of solvation -102.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds