Wall clock time and date at job start Wed Apr 1 2020 04:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86799 * 120.00422 * 2 1 4 4 H 1.48504 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47171 * 299.99902 * 3 2 1 6 6 H 1.48501 * 109.47041 * 60.00035 * 3 2 1 7 7 C 1.38656 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00526 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99837 * 185.37899 * 9 7 2 11 11 C 1.38943 * 120.03693 * 5.65571 * 10 9 7 12 12 C 1.38126 * 120.07218 * 179.70326 * 11 10 9 13 13 C 1.38203 * 120.13363 * 0.55666 * 12 11 10 14 14 C 1.38915 * 120.06970 * 359.44326 * 13 12 11 15 15 N 1.39944 * 120.03837 * 180.25209 * 14 13 12 16 16 C 1.34776 * 120.00048 * 145.30779 * 15 14 13 17 17 O 1.21583 * 119.99825 * 354.52421 * 16 15 14 18 18 N 1.34773 * 119.99975 * 174.52929 * 16 15 14 19 19 C 1.46508 * 120.00084 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.46872 * 34.99535 * 19 18 16 21 21 C 1.53003 * 109.46774 * 274.99692 * 19 18 16 22 22 C 1.52999 * 109.46797 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47213 * 60.00072 * 22 21 19 24 24 C 1.53003 * 109.47180 * 299.99693 * 23 22 21 25 25 C 1.52998 * 109.47403 * 154.99662 * 19 18 16 26 26 H 1.09001 * 109.46915 * 59.99625 * 25 19 18 27 27 C 1.50705 * 109.47006 * 299.99977 * 25 19 18 28 28 N 1.34772 * 120.00077 * 179.97438 * 27 25 19 29 29 O 1.21283 * 119.99782 * 359.97438 * 27 25 19 30 30 C 1.38740 * 120.02855 * 185.64045 * 10 9 7 31 31 H 0.97008 * 119.99846 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.96499 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.93550 * 180.27940 * 12 11 10 34 34 H 1.08003 * 119.96819 * 179.72073 * 13 12 11 35 35 H 0.96996 * 119.99954 * 325.30876 * 15 14 13 36 36 H 0.97002 * 120.00141 * 359.97438 * 18 16 15 37 37 H 1.08995 * 109.46851 * 299.99399 * 21 19 18 38 38 H 1.08995 * 109.47408 * 59.99983 * 21 19 18 39 39 H 1.09001 * 109.47558 * 300.00003 * 22 21 19 40 40 H 1.08997 * 109.46849 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.47337 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47584 * 59.99679 * 23 22 21 43 43 H 1.09000 * 109.47293 * 300.00249 * 24 23 22 44 44 H 1.08995 * 109.47408 * 179.97438 * 24 23 22 45 45 H 0.96995 * 119.99934 * 0.02562 * 28 27 25 46 46 H 0.97003 * 119.99865 * 179.97438 * 28 27 25 47 47 H 1.07998 * 120.07486 * 0.03548 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0001 9 8 1.3345 -2.3685 0.0005 10 6 2.0692 -3.5043 0.1145 11 6 3.4377 -3.4275 0.3420 12 6 4.1850 -4.5828 0.4642 13 6 3.5763 -5.8182 0.3491 14 6 2.2084 -5.9017 0.1216 15 7 1.5919 -7.1531 0.0104 16 6 0.3392 -7.3307 0.4748 17 8 -0.2181 -6.4346 1.0785 18 7 -0.2957 -8.5018 0.2699 19 6 -1.6576 -8.6948 0.7742 20 1 -2.2065 -7.7554 0.7068 21 6 -1.6012 -9.1489 2.2341 22 6 -3.0236 -9.3498 2.7610 23 6 -3.7323 -10.4154 1.9224 24 6 -3.7887 -9.9612 0.4624 25 6 -2.3658 -9.7605 -0.0645 26 1 -1.8169 -10.6998 0.0028 27 6 -2.4213 -9.3132 -1.5026 28 7 -3.0035 -10.0982 -2.4305 29 8 -1.9420 -8.2467 -1.8247 30 6 1.4542 -4.7430 0.0041 31 1 -0.4850 0.8401 -0.0004 32 1 3.9171 -2.4635 0.4279 33 1 5.2478 -4.5205 0.6455 34 1 4.1639 -6.7198 0.4405 35 1 2.0661 -7.8925 -0.4008 36 1 0.1488 -9.2167 -0.2121 37 1 -1.0525 -10.0882 2.3014 38 1 -1.0967 -8.3897 2.8317 39 1 -3.5721 -8.4103 2.6937 40 1 -2.9834 -9.6738 3.8009 41 1 -4.7454 -10.5588 2.2980 42 1 -3.1839 -11.3549 1.9896 43 1 -4.3372 -9.0216 0.3951 44 1 -4.2932 -10.7204 -0.1351 45 1 -3.3871 -10.9510 -2.1728 46 1 -3.0395 -9.8100 -3.3561 47 1 0.3907 -4.8054 -0.1731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762213913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:05 Heat of formation + Delta-G solvation = -76.068249 kcal Electronic energy + Delta-G solvation = -30518.900969 eV Core-core repulsion = 26280.922528 eV Total energy + Delta-G solvation = -4237.978441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84545 -39.76854 -38.56932 -37.76591 -36.39213 -34.33399 -33.88493 -33.67880 -32.12662 -31.20784 -29.94834 -29.10888 -27.89610 -25.17435 -24.17322 -23.27073 -21.97071 -21.21701 -20.86699 -20.46003 -20.06689 -18.29779 -18.12486 -17.64520 -16.96320 -16.84771 -16.23281 -15.24214 -15.09459 -15.00035 -14.91725 -14.66714 -14.44894 -14.19805 -14.05563 -13.90242 -13.57702 -13.44652 -13.36935 -12.84807 -12.77658 -12.52519 -12.37130 -11.70026 -11.64553 -11.56452 -11.39582 -11.21273 -11.03664 -10.93657 -10.90058 -10.64634 -10.58997 -10.35269 -10.02262 -9.93211 -9.78351 -9.55890 -9.14507 -8.86907 -8.70404 -7.48809 -7.03313 -6.30652 -3.89557 2.24386 2.40790 2.49375 2.85919 3.19405 3.21066 3.22096 3.28029 3.60726 4.06486 4.16299 4.27426 4.33700 4.56509 4.74820 4.75660 4.84897 4.90096 4.94501 5.11032 5.16337 5.25130 5.35908 5.46329 5.52186 5.67164 5.69878 5.75180 5.84901 5.86168 5.97371 6.08581 6.14622 6.24572 6.38808 6.49899 6.52183 6.62718 6.71187 7.00594 7.03333 7.17598 7.21419 7.41592 7.47496 7.62931 7.97461 8.03824 8.14515 8.25127 8.92702 9.14234 9.88110 10.87612 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.002465 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.711933 B =11358.162587 C =11929.551127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.169 3.831 11 C -0.247 4.247 12 C -0.059 4.059 13 C -0.238 4.238 14 C 0.199 3.801 15 N -0.684 5.684 16 C 0.707 3.293 17 O -0.560 6.560 18 N -0.733 5.733 19 C 0.186 3.814 20 H 0.097 0.903 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.108 4.108 25 C -0.116 4.116 26 H 0.101 0.899 27 C 0.511 3.489 28 N -0.860 5.860 29 O -0.515 6.515 30 C -0.184 4.184 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.399 0.601 36 H 0.389 0.611 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.398 0.602 46 H 0.401 0.599 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 -27.725 -0.182 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.114 3.886 11 C -0.267 4.267 12 C -0.078 4.078 13 C -0.260 4.260 14 C 0.105 3.895 15 N -0.331 5.331 16 C 0.408 3.592 17 O -0.435 6.435 18 N -0.387 5.387 19 C 0.079 3.921 20 H 0.115 0.885 21 C -0.170 4.170 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.138 4.138 26 H 0.119 0.881 27 C 0.295 3.705 28 N -0.424 5.424 29 O -0.388 6.388 30 C -0.206 4.206 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.233 0.767 36 H 0.221 0.779 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.226 0.774 46 H 0.232 0.768 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.860 -25.941 0.327 26.596 hybrid contribution 0.755 -0.364 -0.768 1.137 sum -5.105 -26.305 -0.441 26.799 Atomic orbital electron populations 1.70077 1.05935 1.27341 1.46277 1.25296 0.95818 0.98781 0.96779 0.85655 0.79112 0.80540 0.78129 1.19125 1.20248 1.20235 1.21378 0.91777 0.80896 1.52537 0.89038 1.84018 1.34126 1.11342 1.78354 1.19126 0.90021 0.87712 0.91720 1.21152 0.94268 0.98940 1.12370 1.20467 0.98254 0.91668 0.97428 1.20223 0.92957 0.97434 1.15352 1.16922 0.91057 0.82865 0.98664 1.42465 1.14948 1.12129 1.63524 1.15824 0.81057 0.82730 0.79631 1.91008 1.65978 1.41417 1.45103 1.44881 1.16268 1.15424 1.62085 1.20512 0.81834 0.98487 0.91220 0.88479 1.21989 0.97287 1.01873 0.95819 1.21536 0.95612 0.99466 0.99243 1.21561 1.01063 0.98850 0.94103 1.21520 0.93550 1.02603 0.96916 1.21707 0.99357 1.00859 0.91857 0.88096 1.20624 0.77541 0.84452 0.87889 1.43914 1.62689 1.23871 1.11956 1.90895 1.44556 1.21781 1.81599 1.20059 1.00838 0.88745 1.10969 0.92194 0.85547 0.87162 0.87555 0.76723 0.77876 0.91876 0.90463 0.91272 0.91425 0.91303 0.91663 0.90716 0.91069 0.77392 0.76845 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.84 13.67 55.48 0.76 -26.08 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.39 -11.59 9.44 30.89 0.29 -11.29 16 8 H 0.09 2.51 5.29 -52.49 -0.28 2.23 16 9 O -0.18 -5.47 9.76 0.03 0.00 -5.47 16 10 C 0.17 4.54 6.64 -39.13 -0.26 4.28 16 11 C -0.25 -5.80 9.13 -39.36 -0.36 -6.16 16 12 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 13 C -0.24 -4.42 9.96 -39.34 -0.39 -4.81 16 14 C 0.20 4.10 6.25 -83.71 -0.52 3.58 16 15 N -0.68 -11.34 5.34 -14.24 -0.08 -11.41 16 16 C 0.71 12.59 8.25 -86.92 -0.72 11.87 16 17 O -0.56 -12.86 13.79 5.29 0.07 -12.78 16 18 N -0.73 -9.26 3.87 -58.67 -0.23 -9.49 16 19 C 0.19 2.11 1.45 -67.93 -0.10 2.01 16 20 H 0.10 1.51 7.53 -51.93 -0.39 1.11 16 21 C -0.13 -1.27 5.49 -26.73 -0.15 -1.42 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.63 5.92 -26.73 -0.16 -0.78 16 24 C -0.11 -0.61 5.10 -26.70 -0.14 -0.74 16 25 C -0.12 -0.85 2.11 -91.75 -0.19 -1.05 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 C 0.51 4.97 7.26 -10.99 -0.08 4.89 16 28 N -0.86 -4.72 8.77 31.22 0.27 -4.45 16 29 O -0.51 -8.08 16.04 5.55 0.09 -7.99 16 30 C -0.18 -4.65 8.59 -39.21 -0.34 -4.98 16 31 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.13 2.93 5.70 -52.48 -0.30 2.63 16 33 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.40 4.85 8.84 -40.82 -0.36 4.49 16 36 H 0.39 3.68 8.62 -40.82 -0.35 3.33 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.23 7.57 -51.93 -0.39 -0.16 16 45 H 0.40 0.84 8.25 -40.82 -0.34 0.50 16 46 H 0.40 2.17 8.93 -40.82 -0.36 1.80 16 47 H 0.13 3.57 6.52 -52.49 -0.34 3.22 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -40.27 386.00 -8.56 -48.83 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.48 Total: 12.73 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.76 Total: -6.28 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.73 Total: -51.43 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.16 Total: -26.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.27 -8.56 -48.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762213913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.238 kcal (2) G-P(sol) polarization free energy of solvation -40.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds