Wall clock time and date at job start Wed Apr 1 2020 04:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86799 * 120.00422 * 2 1 4 4 H 1.48504 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47171 * 299.99902 * 3 2 1 6 6 H 1.48501 * 109.47041 * 60.00035 * 3 2 1 7 7 C 1.38656 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00526 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99837 * 185.37899 * 9 7 2 11 11 C 1.38943 * 120.03693 * 5.65571 * 10 9 7 12 12 C 1.38126 * 120.07218 * 179.70326 * 11 10 9 13 13 C 1.38203 * 120.13363 * 0.55666 * 12 11 10 14 14 C 1.38915 * 120.06970 * 359.44326 * 13 12 11 15 15 N 1.39944 * 120.03837 * 180.25209 * 14 13 12 16 16 C 1.34776 * 120.00048 * 145.30779 * 15 14 13 17 17 O 1.21583 * 119.99825 * 354.52421 * 16 15 14 18 18 N 1.34773 * 119.99975 * 174.52929 * 16 15 14 19 19 C 1.46508 * 120.00084 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.46872 * 34.99535 * 19 18 16 21 21 C 1.53003 * 109.46774 * 274.99692 * 19 18 16 22 22 C 1.52999 * 109.46797 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47213 * 60.00072 * 22 21 19 24 24 C 1.53003 * 109.47180 * 299.99693 * 23 22 21 25 25 C 1.52998 * 109.47403 * 154.99662 * 19 18 16 26 26 H 1.09001 * 109.46915 * 59.99625 * 25 19 18 27 27 C 1.50705 * 109.47006 * 299.99977 * 25 19 18 28 28 N 1.34772 * 120.00077 * 179.97438 * 27 25 19 29 29 O 1.21283 * 119.99782 * 359.97438 * 27 25 19 30 30 C 1.38740 * 120.02855 * 185.64045 * 10 9 7 31 31 H 0.97008 * 119.99846 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.96499 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.93550 * 180.27940 * 12 11 10 34 34 H 1.08003 * 119.96819 * 179.72073 * 13 12 11 35 35 H 0.96996 * 119.99954 * 325.30876 * 15 14 13 36 36 H 0.97002 * 120.00141 * 359.97438 * 18 16 15 37 37 H 1.08995 * 109.46851 * 299.99399 * 21 19 18 38 38 H 1.08995 * 109.47408 * 59.99983 * 21 19 18 39 39 H 1.09001 * 109.47558 * 300.00003 * 22 21 19 40 40 H 1.08997 * 109.46849 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.47337 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47584 * 59.99679 * 23 22 21 43 43 H 1.09000 * 109.47293 * 300.00249 * 24 23 22 44 44 H 1.08995 * 109.47408 * 179.97438 * 24 23 22 45 45 H 0.96995 * 119.99934 * 0.02562 * 28 27 25 46 46 H 0.97003 * 119.99865 * 179.97438 * 28 27 25 47 47 H 1.07998 * 120.07486 * 0.03548 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0001 9 8 1.3345 -2.3685 0.0005 10 6 2.0692 -3.5043 0.1145 11 6 3.4377 -3.4275 0.3420 12 6 4.1850 -4.5828 0.4642 13 6 3.5763 -5.8182 0.3491 14 6 2.2084 -5.9017 0.1216 15 7 1.5919 -7.1531 0.0104 16 6 0.3392 -7.3307 0.4748 17 8 -0.2181 -6.4346 1.0785 18 7 -0.2957 -8.5018 0.2699 19 6 -1.6576 -8.6948 0.7742 20 1 -2.2065 -7.7554 0.7068 21 6 -1.6012 -9.1489 2.2341 22 6 -3.0236 -9.3498 2.7610 23 6 -3.7323 -10.4154 1.9224 24 6 -3.7887 -9.9612 0.4624 25 6 -2.3658 -9.7605 -0.0645 26 1 -1.8169 -10.6998 0.0028 27 6 -2.4213 -9.3132 -1.5026 28 7 -3.0035 -10.0982 -2.4305 29 8 -1.9420 -8.2467 -1.8247 30 6 1.4542 -4.7430 0.0041 31 1 -0.4850 0.8401 -0.0004 32 1 3.9171 -2.4635 0.4279 33 1 5.2478 -4.5205 0.6455 34 1 4.1639 -6.7198 0.4405 35 1 2.0661 -7.8925 -0.4008 36 1 0.1488 -9.2167 -0.2121 37 1 -1.0525 -10.0882 2.3014 38 1 -1.0967 -8.3897 2.8317 39 1 -3.5721 -8.4103 2.6937 40 1 -2.9834 -9.6738 3.8009 41 1 -4.7454 -10.5588 2.2980 42 1 -3.1839 -11.3549 1.9896 43 1 -4.3372 -9.0216 0.3951 44 1 -4.2932 -10.7204 -0.1351 45 1 -3.3871 -10.9510 -2.1728 46 1 -3.0395 -9.8100 -3.3561 47 1 0.3907 -4.8054 -0.1731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762213913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:04 Heat of formation + Delta-G solvation = -110.196141 kcal Electronic energy + Delta-G solvation = -30520.380866 eV Core-core repulsion = 26280.922528 eV Total energy + Delta-G solvation = -4239.458338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95055 -41.08942 -40.29304 -38.76352 -38.08089 -35.54115 -35.34020 -34.55539 -34.25789 -31.86316 -31.30950 -30.68279 -29.37400 -27.32982 -24.96385 -24.40457 -23.42426 -22.89537 -21.83203 -21.54146 -20.96554 -19.97518 -19.55706 -18.95885 -18.37891 -17.65542 -17.43697 -16.79851 -16.64171 -16.42476 -15.98723 -15.92934 -15.84492 -15.57904 -15.48123 -15.22013 -14.87621 -14.77610 -14.40948 -14.27549 -14.09098 -13.62238 -13.56739 -13.36186 -13.18510 -12.91155 -12.69279 -12.38219 -12.35857 -12.27421 -12.08120 -11.93659 -11.63516 -11.46327 -11.31295 -11.28733 -10.99937 -10.86514 -10.76937 -10.61852 -10.04707 -9.30121 -8.83496 -8.46600 -6.16776 0.47562 0.71359 1.33137 1.43514 1.53559 1.55578 1.66193 2.14099 2.18092 2.56116 2.84282 3.09697 3.18888 3.43517 3.58252 3.76665 3.90655 4.11570 4.14433 4.20851 4.30155 4.33912 4.37307 4.42386 4.43744 4.45626 4.70938 4.74077 4.80514 4.91568 4.97959 5.06892 5.10844 5.14367 5.17698 5.25109 5.34918 5.40255 5.47235 5.50115 5.55160 5.63971 5.74631 5.91370 5.99689 6.03445 6.23222 6.50405 6.96456 7.02937 7.40557 7.55129 7.80848 8.78101 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.002465 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.711933 B =11358.162587 C =11929.551127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.031 4.031 3 Si 1.027 2.973 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.108 0.892 9 O -0.239 6.239 10 C 0.128 3.872 11 C -0.256 4.256 12 C -0.045 4.045 13 C -0.205 4.205 14 C 0.206 3.794 15 N -0.669 5.669 16 C 0.699 3.301 17 O -0.621 6.621 18 N -0.708 5.708 19 C 0.180 3.820 20 H 0.039 0.961 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.109 4.109 24 C -0.106 4.106 25 C -0.102 4.102 26 H 0.147 0.853 27 C 0.508 3.492 28 N -0.834 5.834 29 O -0.588 6.588 30 C -0.215 4.215 31 H 0.272 0.728 32 H 0.125 0.875 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.425 0.575 36 H 0.409 0.591 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.419 0.581 46 H 0.404 0.596 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 -32.524 -0.134 32.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.227 4.227 3 Si 0.846 3.154 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.125 0.875 9 O -0.146 6.146 10 C 0.077 3.923 11 C -0.276 4.276 12 C -0.064 4.064 13 C -0.226 4.226 14 C 0.110 3.890 15 N -0.318 5.318 16 C 0.399 3.601 17 O -0.500 6.500 18 N -0.362 5.362 19 C 0.074 3.926 20 H 0.058 0.942 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.124 4.124 26 H 0.165 0.835 27 C 0.293 3.707 28 N -0.399 5.399 29 O -0.467 6.467 30 C -0.237 4.237 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.182 0.818 34 H 0.183 0.817 35 H 0.264 0.736 36 H 0.245 0.755 37 H 0.115 0.885 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.129 0.871 45 H 0.252 0.748 46 H 0.235 0.765 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.009 -30.946 0.336 31.093 hybrid contribution -0.123 0.740 -0.793 1.092 sum -3.132 -30.206 -0.458 30.371 Atomic orbital electron populations 1.70260 1.08438 1.28706 1.49178 1.26800 0.96898 1.03206 0.95826 0.84424 0.78372 0.74133 0.78503 1.16777 1.19284 1.19357 1.21984 0.92724 0.81223 1.52956 0.87480 1.83982 1.36318 1.12846 1.81428 1.19641 0.91875 0.87079 0.93683 1.21310 0.92761 1.00835 1.12647 1.21052 1.00454 0.90204 0.94642 1.20860 0.91680 0.99455 1.10570 1.17105 0.92061 0.82817 0.97004 1.42252 1.14774 1.11514 1.63256 1.16168 0.81256 0.83392 0.79287 1.90987 1.67348 1.43863 1.47842 1.44701 1.16414 1.14139 1.60956 1.20623 0.80723 0.97667 0.93584 0.94238 1.21907 0.98761 1.01824 0.93633 1.21569 0.94258 0.99535 1.00684 1.21543 1.01876 0.98573 0.92668 1.21594 0.92064 1.02601 0.98168 1.21704 1.00604 1.00668 0.89424 0.83500 1.21052 0.76750 0.83663 0.89240 1.43712 1.60722 1.23976 1.11457 1.90888 1.48143 1.24928 1.82762 1.20017 0.99339 0.90599 1.13785 0.91928 0.85682 0.81827 0.81663 0.73611 0.75451 0.88515 0.94673 0.94089 0.90189 0.89908 0.88733 0.93447 0.87132 0.74850 0.76529 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.30 13.67 21.61 0.30 -62.01 16 2 C -0.03 -1.91 5.49 84.83 0.47 -1.44 16 3 Si 1.03 45.96 29.55 68.60 2.03 47.99 16 4 H -0.24 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.41 -26.22 9.44 67.92 0.64 -25.58 16 8 H 0.11 6.12 5.29 -2.91 -0.02 6.11 16 9 O -0.24 -16.38 9.76 -22.82 -0.22 -16.60 16 10 C 0.13 7.41 6.64 22.56 0.15 7.56 16 11 C -0.26 -12.09 9.13 22.41 0.20 -11.89 16 12 C -0.05 -1.60 10.03 22.23 0.22 -1.38 16 13 C -0.20 -6.76 9.96 22.42 0.22 -6.54 16 14 C 0.21 8.45 6.25 38.13 0.24 8.69 16 15 N -0.67 -21.84 5.34 -317.24 -1.70 -23.54 16 16 C 0.70 26.20 8.25 179.06 1.48 27.67 16 17 O -0.62 -31.57 13.79 -3.98 -0.05 -31.62 16 18 N -0.71 -18.14 3.87 -457.81 -1.77 -19.91 16 19 C 0.18 4.28 1.45 44.99 0.07 4.34 16 20 H 0.04 1.41 7.53 -2.39 -0.02 1.39 16 21 C -0.12 -2.39 5.49 30.60 0.17 -2.22 16 22 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 23 C -0.11 -0.80 5.92 30.59 0.18 -0.62 16 24 C -0.11 -0.95 5.10 30.61 0.16 -0.79 16 25 C -0.10 -1.31 2.11 -11.52 -0.02 -1.34 16 26 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 27 C 0.51 9.50 7.26 87.66 0.64 10.13 16 28 N -0.83 -7.23 8.77 -173.53 -1.52 -8.76 16 29 O -0.59 -19.54 16.04 -3.04 -0.05 -19.59 16 30 C -0.22 -11.72 8.59 22.51 0.19 -11.53 16 31 H 0.27 16.60 8.31 -92.70 -0.77 15.83 16 32 H 0.13 5.85 5.70 -2.91 -0.02 5.84 16 33 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.42 9.13 8.84 -92.71 -0.82 8.31 16 36 H 0.41 6.97 8.62 -92.71 -0.80 6.18 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 0.18 7.57 -2.39 -0.02 0.16 16 45 H 0.42 0.05 8.25 -92.71 -0.76 -0.72 16 46 H 0.40 3.72 8.93 -92.71 -0.83 2.89 16 47 H 0.08 5.28 6.52 -2.91 -0.02 5.26 16 Total: -1.00 -106.42 386.00 0.04 -106.38 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -2.15 Total: 34.26 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 5.18 Total: -6.60 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.70 Total: -114.21 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -0.33 Total: -67.82 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -106.42 0.04 -106.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762213913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.812 kcal (2) G-P(sol) polarization free energy of solvation -106.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds