Wall clock time and date at job start Wed Apr 1 2020 04:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47503 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00356 * 180.02562 * 11 10 9 13 13 C 1.38750 * 120.05502 * 359.72622 * 12 11 10 14 14 C 1.38125 * 119.94330 * 179.70368 * 13 12 11 15 15 C 1.38288 * 120.05518 * 0.59073 * 14 13 12 16 16 C 1.38245 * 120.10906 * 359.68193 * 15 14 13 17 17 C 1.50702 * 119.96727 * 180.02562 * 16 15 14 18 18 N 1.46907 * 109.46731 * 270.01881 * 17 16 15 19 19 C 1.46897 * 110.99738 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46821 * 180.02562 * 19 18 17 21 21 H 1.09002 * 110.86220 * 56.19516 * 20 19 18 22 22 C 1.54741 * 110.97228 * 180.02562 * 20 19 18 23 23 C 1.51690 * 102.54639 * 142.32078 * 22 20 19 24 24 C 1.47605 * 125.86260 * 164.64828 * 23 22 20 25 25 N 1.34769 * 119.99968 * 180.02562 * 24 23 22 26 26 O 1.21548 * 119.99850 * 359.97438 * 24 23 22 27 27 N 1.29009 * 108.27712 * 344.61331 * 23 22 20 28 28 O 1.41391 * 112.88859 * 359.67920 * 27 23 22 29 29 C 1.38163 * 120.05829 * 0.02562 * 16 15 14 30 30 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 35 35 H 1.07996 * 120.02815 * 359.97190 * 13 12 11 36 36 H 1.08000 * 119.97129 * 180.29419 * 14 13 12 37 37 H 1.07998 * 119.94230 * 179.70567 * 15 14 13 38 38 H 1.08995 * 109.47368 * 30.02063 * 17 16 15 39 39 H 1.09000 * 109.47222 * 150.02363 * 17 16 15 40 40 H 1.00897 * 110.99739 * 56.04774 * 18 17 16 41 41 H 1.09000 * 109.47518 * 299.99850 * 19 18 17 42 42 H 1.09001 * 109.47459 * 60.00495 * 19 18 17 43 43 H 1.08997 * 110.79403 * 260.58258 * 22 20 19 44 44 H 1.08997 * 110.79363 * 24.05659 * 22 20 19 45 45 H 0.97008 * 120.00377 * 359.97438 * 25 24 23 46 46 H 0.96997 * 120.00161 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.02988 * 180.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 0.0004 13 6 3.6564 -5.9682 -0.0043 14 6 4.4064 -7.1281 0.0023 15 6 3.7773 -8.3596 0.0014 16 6 2.3968 -8.4332 0.0004 17 6 1.7147 -9.7770 -0.0001 18 7 1.4944 -10.2138 -1.3853 19 6 0.8292 -11.5229 -1.4250 20 6 0.6179 -11.9436 -2.8808 21 1 1.5634 -11.9533 -3.4232 22 6 -0.0826 -13.3209 -2.9632 23 6 -1.0084 -13.1491 -4.1525 24 6 -1.6861 -14.2367 -4.8850 25 7 -2.4866 -13.9485 -5.9301 26 8 -1.5214 -15.3923 -4.5461 27 7 -1.1023 -11.8892 -4.4134 28 8 -0.3422 -11.0868 -3.5316 29 6 1.6421 -7.2759 -0.0002 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 0.8903 32 1 0.6246 -2.5571 -0.8897 33 1 2.8718 -3.6044 -0.8895 34 1 2.8718 -3.6044 0.8904 35 1 4.1481 -5.0067 -0.0088 36 1 5.4850 -7.0732 0.0035 37 1 4.3655 -9.2654 0.0018 38 1 2.3432 -10.5038 0.5145 39 1 0.7560 -9.6980 0.5127 40 1 2.3617 -10.2327 -1.9006 41 1 1.4512 -12.2621 -0.9202 42 1 -0.1356 -11.4556 -0.9223 43 1 0.6425 -14.1134 -3.1485 44 1 -0.6519 -13.5204 -2.0553 45 1 -2.6177 -13.0262 -6.2008 46 1 -2.9322 -14.6632 -6.4113 47 1 0.5637 -7.3340 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788434660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:39 Heat of formation + Delta-G solvation = -33.906830 kcal Electronic energy + Delta-G solvation = -28087.507737 eV Core-core repulsion = 23851.357552 eV Total energy + Delta-G solvation = -4236.150185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09791 -39.83124 -39.58738 -37.69839 -36.14102 -34.61739 -33.37454 -33.24107 -32.46064 -30.90549 -30.39471 -29.13373 -26.85012 -25.22504 -24.95626 -24.05537 -22.41080 -22.19352 -21.59656 -20.49717 -20.15487 -18.45339 -17.76365 -17.66250 -16.68277 -16.46666 -16.22824 -16.03550 -15.63709 -15.57600 -15.39901 -15.31310 -15.00906 -14.76966 -14.50635 -14.13020 -13.90581 -13.64863 -13.49615 -12.98260 -12.70955 -12.63492 -12.35833 -12.28918 -12.11952 -12.01629 -11.55322 -11.40657 -11.34673 -11.22099 -11.08624 -10.85036 -10.72343 -10.47080 -10.43011 -10.12890 -9.84470 -9.64540 -9.29803 -8.86837 -8.65451 -8.43244 -7.83905 -6.08710 -4.13528 0.36941 1.42824 1.67375 2.13895 2.38739 2.70704 3.29649 3.33983 3.35692 3.45680 3.71344 3.84288 3.90421 3.95478 4.18310 4.32615 4.41856 4.50410 4.70510 4.78444 4.88910 4.90569 4.98172 5.10078 5.14459 5.26129 5.27507 5.34209 5.38127 5.46302 5.70318 5.84175 5.97070 6.05053 6.07337 6.18759 6.35746 6.51128 6.56177 6.58311 6.64727 6.67018 6.74643 6.98412 7.00579 7.40166 7.52380 7.66131 7.82780 8.08411 8.25380 8.91797 9.50611 11.02769 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.001522 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.570541 B =18397.294833 C =19926.070738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.081 4.081 15 C -0.166 4.166 16 C -0.053 4.053 17 C 0.105 3.895 18 N -0.678 5.678 19 C 0.065 3.935 20 C 0.045 3.955 21 H 0.094 0.906 22 C -0.128 4.128 23 C 0.037 3.963 24 C 0.599 3.401 25 N -0.832 5.832 26 O -0.520 6.520 27 N -0.241 5.241 28 O -0.152 6.152 29 C -0.137 4.137 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.345 0.655 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.413 0.587 46 H 0.413 0.587 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -31.467 -6.675 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.098 3.902 13 C -0.229 4.229 14 C -0.099 4.099 15 C -0.185 4.185 16 C -0.054 4.054 17 C -0.024 4.024 18 N -0.309 5.309 19 C -0.066 4.066 20 C -0.014 4.014 21 H 0.112 0.888 22 C -0.168 4.168 23 C -0.158 4.158 24 C 0.380 3.620 25 N -0.397 5.397 26 O -0.393 6.393 27 N 0.017 4.983 28 O -0.176 6.176 29 C -0.156 4.156 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.243 0.757 46 H 0.245 0.755 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.522 -30.706 -6.998 31.497 hybrid contribution 1.668 0.169 0.429 1.730 sum 2.190 -30.537 -6.569 31.312 Atomic orbital electron populations 1.69966 1.06095 1.27066 1.49558 1.24986 0.94903 0.99353 0.94903 0.86547 0.79496 0.82616 0.78695 1.20105 1.21113 1.20109 1.20937 0.93002 0.90251 1.52421 0.92432 1.19121 0.94178 0.88983 0.98905 1.23327 0.97081 0.80867 0.99600 1.86183 1.36514 1.13183 1.86890 1.19209 0.90089 0.87600 0.93316 1.21402 0.93260 0.99842 1.08347 1.20837 0.99339 0.91911 0.97849 1.20751 0.93696 0.97393 1.06699 1.19322 0.93036 0.93689 0.99347 1.20836 0.99974 0.92568 0.88977 1.60363 1.29945 1.26807 1.13789 1.22057 1.00967 0.90732 0.92813 1.23850 0.94031 0.87793 0.95691 0.88820 1.22853 0.97857 0.99338 0.96793 1.25801 0.99518 0.93238 0.97283 1.16874 0.78700 0.86391 0.80034 1.43689 1.49052 1.13934 1.33037 1.90907 1.62368 1.19447 1.66570 1.78342 1.07694 1.03584 1.08699 1.91461 1.45789 1.26279 1.54088 1.20275 1.00379 0.89132 1.05796 0.92653 0.95392 0.95351 0.93144 0.93172 0.85260 0.86240 0.86829 0.94142 0.89821 0.83647 0.92871 0.89412 0.86967 0.87079 0.75739 0.75453 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.42 4.68 37.16 0.17 1.59 16 11 O -0.31 -6.61 10.14 -19.43 -0.20 -6.81 16 12 C 0.14 2.56 6.69 -39.22 -0.26 2.30 16 13 C -0.21 -3.28 9.04 -39.43 -0.36 -3.63 16 14 C -0.08 -1.04 10.04 -39.60 -0.40 -1.43 16 15 C -0.17 -1.91 9.70 -39.56 -0.38 -2.30 16 16 C -0.05 -0.65 5.39 -104.65 -0.56 -1.22 16 17 C 0.10 0.95 5.81 -4.97 -0.03 0.92 16 18 N -0.68 -5.95 6.49 -115.05 -0.75 -6.70 16 19 C 0.06 0.41 5.38 -3.82 -0.02 0.39 16 20 C 0.05 0.31 3.99 -25.81 -0.10 0.20 16 21 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.13 -0.71 6.45 -26.48 -0.17 -0.88 16 23 C 0.04 0.27 7.29 -79.47 -0.58 -0.31 16 24 C 0.60 4.24 8.09 -12.44 -0.10 4.14 16 25 N -0.83 -3.19 8.87 30.47 0.27 -2.92 16 26 O -0.52 -5.21 17.79 5.32 0.09 -5.11 16 27 N -0.24 -2.19 12.15 35.28 0.43 -1.76 16 28 O -0.15 -1.61 12.23 -11.37 -0.14 -1.75 16 29 C -0.14 -2.10 9.64 -39.43 -0.38 -2.48 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 34 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 35 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 39 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.34 2.77 8.72 -39.29 -0.34 2.42 16 41 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 0.51 7.91 -51.93 -0.41 0.10 16 45 H 0.41 1.13 8.51 -40.82 -0.35 0.78 16 46 H 0.41 0.81 8.93 -40.82 -0.36 0.45 16 47 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -34.58 404.84 -8.98 -43.56 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.78 Total: 0.61 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -3.73 Total: -15.69 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.69 Total: -37.24 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.24 Total: -13.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.58 -8.98 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788434660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.654 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds