Wall clock time and date at job start Wed Apr 1 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47503 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00356 * 180.02562 * 11 10 9 13 13 C 1.38750 * 120.05502 * 359.72622 * 12 11 10 14 14 C 1.38125 * 119.94330 * 179.70368 * 13 12 11 15 15 C 1.38288 * 120.05518 * 0.59073 * 14 13 12 16 16 C 1.38245 * 120.10906 * 359.68193 * 15 14 13 17 17 C 1.50702 * 119.96727 * 180.02562 * 16 15 14 18 18 N 1.46907 * 109.46731 * 270.01881 * 17 16 15 19 19 C 1.46897 * 110.99738 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46821 * 180.02562 * 19 18 17 21 21 H 1.09002 * 110.86220 * 56.19516 * 20 19 18 22 22 C 1.54741 * 110.97228 * 180.02562 * 20 19 18 23 23 C 1.51690 * 102.54639 * 142.32078 * 22 20 19 24 24 C 1.47605 * 125.86260 * 164.64828 * 23 22 20 25 25 N 1.34769 * 119.99968 * 180.02562 * 24 23 22 26 26 O 1.21548 * 119.99850 * 359.97438 * 24 23 22 27 27 N 1.29009 * 108.27712 * 344.61331 * 23 22 20 28 28 O 1.41391 * 112.88859 * 359.67920 * 27 23 22 29 29 C 1.38163 * 120.05829 * 0.02562 * 16 15 14 30 30 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 35 35 H 1.07996 * 120.02815 * 359.97190 * 13 12 11 36 36 H 1.08000 * 119.97129 * 180.29419 * 14 13 12 37 37 H 1.07998 * 119.94230 * 179.70567 * 15 14 13 38 38 H 1.08995 * 109.47368 * 30.02063 * 17 16 15 39 39 H 1.09000 * 109.47222 * 150.02363 * 17 16 15 40 40 H 1.00897 * 110.99739 * 56.04774 * 18 17 16 41 41 H 1.09000 * 109.47518 * 299.99850 * 19 18 17 42 42 H 1.09001 * 109.47459 * 60.00495 * 19 18 17 43 43 H 1.08997 * 110.79403 * 260.58258 * 22 20 19 44 44 H 1.08997 * 110.79363 * 24.05659 * 22 20 19 45 45 H 0.97008 * 120.00377 * 359.97438 * 25 24 23 46 46 H 0.96997 * 120.00161 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.02988 * 180.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 0.0004 13 6 3.6564 -5.9682 -0.0043 14 6 4.4064 -7.1281 0.0023 15 6 3.7773 -8.3596 0.0014 16 6 2.3968 -8.4332 0.0004 17 6 1.7147 -9.7770 -0.0001 18 7 1.4944 -10.2138 -1.3853 19 6 0.8292 -11.5229 -1.4250 20 6 0.6179 -11.9436 -2.8808 21 1 1.5634 -11.9533 -3.4232 22 6 -0.0826 -13.3209 -2.9632 23 6 -1.0084 -13.1491 -4.1525 24 6 -1.6861 -14.2367 -4.8850 25 7 -2.4866 -13.9485 -5.9301 26 8 -1.5214 -15.3923 -4.5461 27 7 -1.1023 -11.8892 -4.4134 28 8 -0.3422 -11.0868 -3.5316 29 6 1.6421 -7.2759 -0.0002 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 0.8903 32 1 0.6246 -2.5571 -0.8897 33 1 2.8718 -3.6044 -0.8895 34 1 2.8718 -3.6044 0.8904 35 1 4.1481 -5.0067 -0.0088 36 1 5.4850 -7.0732 0.0035 37 1 4.3655 -9.2654 0.0018 38 1 2.3432 -10.5038 0.5145 39 1 0.7560 -9.6980 0.5127 40 1 2.3617 -10.2327 -1.9006 41 1 1.4512 -12.2621 -0.9202 42 1 -0.1356 -11.4556 -0.9223 43 1 0.6425 -14.1134 -3.1485 44 1 -0.6519 -13.5204 -2.0553 45 1 -2.6177 -13.0262 -6.2008 46 1 -2.9322 -14.6632 -6.4113 47 1 0.5637 -7.3340 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788434660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:38 Heat of formation + Delta-G solvation = -60.871265 kcal Electronic energy + Delta-G solvation = -28088.677002 eV Core-core repulsion = 23851.357552 eV Total energy + Delta-G solvation = -4237.319451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65899 -41.06145 -40.18306 -38.89642 -36.94677 -35.47020 -35.15218 -33.81649 -33.19841 -32.57956 -31.36960 -30.50046 -27.61733 -26.92073 -25.70904 -24.86761 -23.52319 -23.23718 -22.74795 -21.51379 -21.01009 -19.16174 -18.90858 -18.25294 -18.15641 -17.27095 -17.07143 -16.94666 -16.92478 -16.84511 -16.48730 -16.32491 -16.09543 -15.65628 -15.35457 -14.97708 -14.65145 -14.54862 -14.32369 -14.29145 -14.21020 -13.94616 -13.55962 -13.13134 -13.09214 -12.89870 -12.72289 -12.62306 -12.55232 -12.48047 -12.38230 -12.05587 -11.78974 -11.68760 -11.58841 -11.57158 -11.38477 -10.94737 -10.70084 -10.61891 -9.82449 -9.35646 -9.07044 -8.26656 -6.40992 -0.19753 0.35741 0.55305 1.40640 1.45010 1.53028 1.57384 1.83715 2.22900 2.27969 2.52052 2.72651 3.07458 3.08433 3.25041 3.45831 3.68325 3.78838 3.86131 3.93911 4.02864 4.17738 4.24084 4.25856 4.30003 4.33547 4.40220 4.45978 4.55863 4.58068 4.68680 4.72636 4.74197 4.87818 4.89363 5.12427 5.30897 5.45576 5.46080 5.54004 5.58300 5.61849 5.68349 5.84775 5.90144 6.00832 6.07677 6.17790 6.43476 6.58906 6.73491 6.96922 7.29186 8.86278 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.001522 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.570541 B =18397.294833 C =19926.070738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.344 6.344 12 C 0.103 3.897 13 C -0.223 4.223 14 C -0.079 4.079 15 C -0.150 4.150 16 C -0.046 4.046 17 C 0.110 3.890 18 N -0.698 5.698 19 C 0.069 3.931 20 C 0.044 3.956 21 H 0.103 0.897 22 C -0.125 4.125 23 C 0.045 3.955 24 C 0.599 3.401 25 N -0.813 5.813 26 O -0.552 6.552 27 N -0.263 5.263 28 O -0.190 6.190 29 C -0.154 4.154 30 H 0.267 0.733 31 H -0.002 1.002 32 H -0.004 1.004 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.350 0.650 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.420 0.580 46 H 0.424 0.576 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -33.546 -6.654 34.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.012 3.988 11 O -0.259 6.259 12 C 0.057 3.943 13 C -0.242 4.242 14 C -0.097 4.097 15 C -0.168 4.168 16 C -0.047 4.047 17 C -0.018 4.018 18 N -0.331 5.331 19 C -0.061 4.061 20 C -0.015 4.015 21 H 0.121 0.879 22 C -0.165 4.165 23 C -0.151 4.151 24 C 0.380 3.620 25 N -0.379 5.379 26 O -0.427 6.427 27 N -0.006 5.006 28 O -0.213 6.213 29 C -0.173 4.173 30 H 0.076 0.924 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.169 0.831 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.251 0.749 46 H 0.258 0.742 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.187 -32.793 -6.995 33.682 hybrid contribution 0.798 0.605 0.375 1.069 sum 3.984 -32.188 -6.619 33.103 Atomic orbital electron populations 1.70122 1.08099 1.28303 1.50443 1.26065 0.95835 1.03747 0.94059 0.85314 0.78098 0.77055 0.79448 1.18839 1.20734 1.18739 1.21375 0.93846 0.91006 1.52424 0.91057 1.18966 0.94568 0.91488 0.95909 1.22836 0.95354 0.80288 1.00372 1.86086 1.37601 1.13848 1.88352 1.19560 0.91223 0.86840 0.96631 1.21504 0.92450 1.01090 1.09158 1.21241 1.00844 0.91227 0.96348 1.21235 0.93455 0.98495 1.03625 1.19696 0.93652 0.93964 0.97361 1.20805 1.00041 0.91348 0.89623 1.60269 1.30531 1.28667 1.13584 1.22081 1.00903 0.90358 0.92721 1.24020 0.93850 0.87818 0.95777 0.87903 1.22924 0.97950 0.99166 0.96454 1.26051 0.98854 0.92791 0.97355 1.16897 0.78891 0.85789 0.80427 1.43620 1.47623 1.14817 1.31815 1.90896 1.63742 1.20412 1.67677 1.78342 1.08687 1.04187 1.09405 1.91421 1.46904 1.28078 1.54853 1.20427 1.00307 0.89666 1.06904 0.92435 0.98367 0.98511 0.92370 0.92182 0.85721 0.83058 0.82667 0.91078 0.90404 0.83087 0.89737 0.90219 0.85109 0.85944 0.74898 0.74210 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.98 43.96 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.03 1.57 5.34 29.85 0.16 1.73 16 10 C 0.09 3.92 4.68 71.98 0.34 4.25 16 11 O -0.34 -15.44 10.14 -92.43 -0.94 -16.38 16 12 C 0.10 3.76 6.69 22.51 0.15 3.91 16 13 C -0.22 -6.90 9.04 22.37 0.20 -6.70 16 14 C -0.08 -1.79 10.04 22.25 0.22 -1.56 16 15 C -0.15 -2.88 9.70 22.28 0.22 -2.67 16 16 C -0.05 -1.04 5.39 -19.88 -0.11 -1.15 16 17 C 0.11 1.72 5.81 85.56 0.50 2.22 16 18 N -0.70 -10.79 6.49 -517.92 -3.36 -14.15 16 19 C 0.07 0.72 5.38 86.30 0.46 1.18 16 20 C 0.04 0.52 3.99 31.19 0.12 0.65 16 21 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 22 C -0.13 -1.15 6.45 30.76 0.20 -0.95 16 23 C 0.04 0.61 7.29 45.76 0.33 0.94 16 24 C 0.60 7.88 8.09 86.72 0.70 8.59 16 25 N -0.81 -5.36 8.87 -175.80 -1.56 -6.92 16 26 O -0.55 -10.52 17.79 -3.87 -0.07 -10.59 16 27 N -0.26 -4.70 12.15 -42.29 -0.51 -5.21 16 28 O -0.19 -3.99 12.23 -38.32 -0.47 -4.46 16 29 C -0.15 -4.83 9.64 22.37 0.22 -4.62 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.06 2.51 7.65 -2.39 -0.02 2.49 16 34 H 0.06 2.56 7.67 -2.39 -0.02 2.54 16 35 H 0.12 3.86 6.30 -2.91 -0.02 3.84 16 36 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 39 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 40 H 0.35 4.66 8.72 -89.70 -0.78 3.88 16 41 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.12 0.87 7.91 -2.39 -0.02 0.85 16 45 H 0.42 1.90 8.51 -92.70 -0.79 1.11 16 46 H 0.42 1.14 8.93 -92.71 -0.83 0.32 16 47 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -79.19 404.84 -1.56 -80.74 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -1.37 Total: 13.24 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.41 Total: -25.01 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -5.15 Total: -83.54 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.47 Total: -31.42 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -79.19 -1.56 -80.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788434660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.870 kcal (2) G-P(sol) polarization free energy of solvation -79.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds