Wall clock time and date at job start Wed Apr 1 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 120.00342 * 2 1 4 4 H 1.48500 * 109.47294 * 240.00445 * 3 2 1 5 5 H 1.48500 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46821 * 120.00375 * 3 2 1 7 7 C 1.40033 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99954 * 184.41211 * 7 2 1 9 9 C 1.41545 * 120.00155 * 4.42070 * 7 2 1 10 10 C 1.41168 * 120.99940 * 145.61364 * 9 7 2 11 11 C 1.36583 * 119.12873 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.25748 * 359.74223 * 11 10 9 13 13 C 1.32489 * 122.22872 * 0.53265 * 12 11 10 14 14 N 1.39466 * 119.64641 * 179.74699 * 13 12 11 15 15 C 1.34774 * 119.99858 * 4.98699 * 14 13 12 16 16 O 1.21577 * 120.00318 * 5.19984 * 15 14 13 17 17 N 1.34779 * 119.99784 * 185.19487 * 15 14 13 18 18 C 1.46922 * 120.64407 * 354.42658 * 17 15 14 19 19 C 1.53191 * 108.77639 * 233.63129 * 18 17 15 20 20 C 1.53030 * 109.34068 * 305.37721 * 19 18 17 21 21 C 1.53026 * 109.56761 * 61.27875 * 20 19 18 22 22 C 1.46935 * 120.64282 * 174.40737 * 17 15 14 23 23 O 1.43144 * 109.41900 * 301.28024 * 20 19 18 24 24 C 1.43084 * 113.68650 * 181.47786 * 23 20 19 25 25 C 1.53262 * 109.04102 * 57.86708 * 24 23 20 26 26 C 1.53268 * 108.81787 * 305.39364 * 25 24 23 27 27 O 1.42962 * 109.39449 * 181.24700 * 20 19 18 28 28 C 1.38639 * 120.70614 * 359.47036 * 13 12 11 29 29 H 0.97001 * 119.99599 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43293 * 359.97438 * 10 9 7 31 31 H 1.07996 * 119.37237 * 180.02562 * 11 10 9 32 32 H 0.96996 * 119.99798 * 184.98744 * 14 13 12 33 33 H 1.08997 * 109.58623 * 113.84765 * 18 17 15 34 34 H 1.09006 * 109.70710 * 353.48541 * 18 17 15 35 35 H 1.08995 * 109.49455 * 185.41017 * 19 18 17 36 36 H 1.09004 * 109.51068 * 65.34628 * 19 18 17 37 37 H 1.09002 * 109.49437 * 58.68689 * 21 20 19 38 38 H 1.08999 * 109.49399 * 178.77158 * 21 20 19 39 39 H 1.09005 * 109.58227 * 246.16384 * 22 17 15 40 40 H 1.08998 * 109.58713 * 6.57848 * 22 17 15 41 41 H 1.08991 * 109.56159 * 297.96905 * 24 23 20 42 42 H 1.09004 * 109.55695 * 177.75106 * 24 23 20 43 43 H 1.08992 * 109.58313 * 65.19041 * 25 24 23 44 44 H 1.09003 * 109.57892 * 185.46623 * 25 24 23 45 45 H 1.09003 * 109.55941 * 174.40462 * 26 25 24 46 46 H 1.09004 * 109.56401 * 294.62238 * 26 25 24 47 47 H 1.07996 * 120.66790 * 180.22873 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6962 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0851 -1.2143 0.0714 9 6 1.3029 -2.4367 -0.0956 10 6 1.8501 -3.5388 -0.7875 11 6 1.1368 -4.7016 -0.8559 12 7 -0.0485 -4.8132 -0.2839 13 6 -0.6129 -3.8109 0.3735 14 7 -1.8694 -3.9865 0.9526 15 6 -2.4588 -5.1983 0.9291 16 8 -1.8573 -6.1585 0.4884 17 7 -3.7152 -5.3456 1.3943 18 6 -4.4107 -4.2245 2.0407 19 6 -4.9120 -4.6813 3.4144 20 6 -5.7668 -5.9398 3.2491 21 6 -4.9173 -7.0609 2.6464 22 6 -4.4160 -6.6306 1.2643 23 8 -6.8681 -5.6563 2.3797 24 6 -7.7495 -6.7669 2.1877 25 6 -8.2856 -7.2211 3.5497 26 6 -7.0996 -7.5073 4.4774 27 8 -6.2591 -6.3505 4.5269 28 6 0.0347 -2.5913 0.4968 29 1 -0.4849 0.8401 0.0004 30 1 2.8196 -3.4632 -1.2572 31 1 1.5518 -5.5473 -1.3839 32 1 -2.3191 -3.2365 1.3722 33 1 -5.2571 -3.9168 1.4268 34 1 -3.7239 -3.3869 2.1625 35 1 -5.5121 -3.8904 3.8641 36 1 -4.0602 -4.9021 4.0578 37 1 -4.0654 -7.2612 3.2962 38 1 -5.5214 -7.9630 2.5495 39 1 -5.2628 -6.5180 0.5872 40 1 -3.7306 -7.3827 0.8737 41 1 -7.2066 -7.5867 1.7175 42 1 -8.5811 -6.4668 1.5500 43 1 -8.9040 -6.4335 3.9800 44 1 -8.8807 -8.1258 3.4249 45 1 -7.4660 -7.7352 5.4784 46 1 -6.5330 -8.3559 4.0942 47 1 -0.4244 -1.7759 1.0360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:28 Heat of formation + Delta-G solvation = -65.664042 kcal Electronic energy + Delta-G solvation = -31149.701195 eV Core-core repulsion = 26912.173914 eV Total energy + Delta-G solvation = -4237.527281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.11081 -39.82170 -38.19928 -36.43173 -35.87444 -34.35316 -33.77164 -33.10455 -31.38928 -30.68373 -30.41135 -28.41826 -26.31450 -25.95785 -24.94490 -23.91502 -22.30436 -21.86249 -21.37451 -19.98945 -19.23093 -18.29321 -17.61247 -17.55186 -16.68508 -15.99020 -15.89151 -15.43331 -15.34907 -15.23222 -15.08970 -14.59532 -14.19048 -14.14447 -13.86576 -13.67420 -13.58279 -13.41407 -12.91660 -12.85777 -12.54729 -12.51397 -12.34663 -12.18568 -11.91514 -11.46847 -11.40983 -11.31876 -11.29320 -11.18947 -11.01856 -10.86857 -10.32503 -10.26989 -10.14490 -9.73849 -9.68784 -9.50072 -9.35353 -8.49068 -7.86531 -7.73060 -7.00274 -6.65672 -4.61206 2.69597 2.85461 2.86832 3.04249 3.06725 3.23872 3.27404 3.35059 3.83634 3.91049 4.14158 4.27682 4.35111 4.37785 4.48914 4.72196 4.75128 4.83174 4.95458 5.00290 5.07274 5.11434 5.22247 5.31965 5.38865 5.41241 5.51346 5.62658 5.66920 5.67888 5.73281 5.83803 5.96371 6.02615 6.47334 6.55921 6.62365 6.69923 6.81473 6.93347 6.98842 7.18399 7.24329 7.42298 7.51959 7.91839 8.11163 8.34822 8.48704 8.75146 8.80989 9.15210 9.71345 10.19009 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.002425 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.211819 B =11542.346130 C =12527.830587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.142 3.858 10 C -0.275 4.275 11 C 0.115 3.885 12 N -0.548 5.548 13 C 0.351 3.649 14 N -0.667 5.667 15 C 0.698 3.302 16 O -0.533 6.533 17 N -0.636 5.636 18 C 0.118 3.882 19 C -0.108 4.108 20 C 0.277 3.723 21 C -0.185 4.185 22 C 0.142 3.858 23 O -0.378 6.378 24 C 0.053 3.947 25 C -0.191 4.191 26 C 0.054 3.946 27 O -0.384 6.384 28 C -0.233 4.233 29 H 0.279 0.721 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.404 0.596 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.942 -8.834 7.770 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.134 3.866 10 C -0.299 4.299 11 C -0.039 4.039 12 N -0.267 5.267 13 C 0.124 3.876 14 N -0.317 5.317 15 C 0.399 3.601 16 O -0.404 6.404 17 N -0.376 5.376 18 C -0.006 4.006 19 C -0.147 4.147 20 C 0.200 3.800 21 C -0.224 4.224 22 C 0.018 3.982 23 O -0.299 6.299 24 C -0.024 4.024 25 C -0.229 4.229 26 C -0.023 4.023 27 O -0.305 6.305 28 C -0.259 4.259 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.241 0.759 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.150 -9.945 7.450 21.178 hybrid contribution 0.261 1.559 0.199 1.593 sum -16.889 -8.387 7.649 20.349 Atomic orbital electron populations 1.69703 1.07411 1.29008 1.37225 1.25899 0.94957 1.01260 0.92170 0.86210 0.79815 0.79833 0.79882 1.18999 1.20360 1.18953 1.19477 0.94740 0.89705 1.45284 0.90222 1.17612 0.90816 0.91846 0.86367 1.21784 1.02813 0.96585 1.08686 1.21489 0.90245 0.95900 0.96279 1.67179 1.13041 1.30786 1.15657 1.18041 0.84547 0.91138 0.93827 1.42764 1.18686 1.10431 1.59801 1.15962 0.80519 0.84123 0.79457 1.90987 1.62125 1.37626 1.49638 1.47365 1.13942 1.12591 1.63735 1.21522 0.97540 0.89130 0.92363 1.21784 0.98831 0.95424 0.98635 1.22646 0.84961 0.94392 0.77971 1.22967 1.01147 0.98817 0.99478 1.21194 0.96524 0.85732 0.94717 1.88200 1.38350 1.36951 1.66350 1.22646 0.93674 0.89998 0.96071 1.22775 0.99353 1.03256 0.97550 1.22638 0.90565 0.88095 1.00966 1.88151 1.66167 1.46178 1.29996 1.21769 0.99570 0.95606 1.08947 0.90955 0.87913 0.85972 0.75890 0.90280 0.89651 0.89031 0.89165 0.89401 0.90283 0.91559 0.88367 0.92503 0.88363 0.90076 0.89826 0.88457 0.92535 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.98 10.66 55.55 0.59 -19.38 16 2 C 0.07 1.79 5.44 -17.34 -0.09 1.70 16 3 Si 0.92 18.27 29.56 -169.99 -5.03 13.24 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.88 9.11 -37.65 -0.34 -12.22 16 8 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 9 C 0.14 3.76 5.57 -106.55 -0.59 3.16 16 10 C -0.27 -6.78 9.85 -39.07 -0.38 -7.16 16 11 C 0.11 2.79 11.10 -18.05 -0.20 2.59 16 12 N -0.55 -14.22 7.89 -12.76 -0.10 -14.33 16 13 C 0.35 8.65 7.41 -154.67 -1.15 7.50 16 14 N -0.67 -13.55 5.30 -15.86 -0.08 -13.64 16 15 C 0.70 13.91 8.25 -86.92 -0.72 13.19 16 16 O -0.53 -12.74 14.05 5.30 0.07 -12.66 16 17 N -0.64 -9.51 2.97 -178.50 -0.53 -10.04 16 18 C 0.12 1.40 6.14 -3.71 -0.02 1.38 16 19 C -0.11 -1.17 5.48 -26.62 -0.15 -1.32 16 20 C 0.28 3.00 1.07 -26.70 -0.03 2.97 16 21 C -0.19 -1.98 4.38 -26.62 -0.12 -2.09 16 22 C 0.14 1.83 6.20 -3.71 -0.02 1.81 16 23 O -0.38 -4.06 9.10 -59.01 -0.54 -4.60 16 24 C 0.05 0.41 6.59 37.29 0.25 0.66 16 25 C -0.19 -1.27 6.36 -26.46 -0.17 -1.43 16 26 C 0.05 0.42 6.59 37.30 0.25 0.66 16 27 O -0.38 -4.22 10.35 -59.01 -0.61 -4.83 16 28 C -0.23 -5.95 8.61 -38.46 -0.33 -6.28 16 29 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 30 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.40 6.87 6.19 -40.82 -0.25 6.62 16 33 H 0.08 0.90 7.81 -51.93 -0.41 0.50 16 34 H 0.09 0.96 5.66 -51.93 -0.29 0.66 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.69 5.13 -51.93 -0.27 0.42 16 39 H 0.07 0.79 7.81 -51.93 -0.41 0.38 16 40 H 0.10 1.43 7.00 -51.93 -0.36 1.07 16 41 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.39 6.51 -51.93 -0.34 0.06 16 47 H 0.14 3.43 6.23 -52.49 -0.33 3.11 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -32.77 367.51 -10.85 -43.62 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.34 Total: 11.97 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -3.82 Total: 5.11 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.12 Total: -57.38 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.07 Total: -22.09 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.77 -10.85 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.046 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds