Wall clock time and date at job start Wed Apr 1 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 120.00342 * 2 1 4 4 H 1.48500 * 109.47294 * 240.00445 * 3 2 1 5 5 H 1.48500 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46821 * 120.00375 * 3 2 1 7 7 C 1.40033 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99954 * 184.41211 * 7 2 1 9 9 C 1.41545 * 120.00155 * 4.42070 * 7 2 1 10 10 C 1.41168 * 120.99940 * 145.61364 * 9 7 2 11 11 C 1.36583 * 119.12873 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.25748 * 359.74223 * 11 10 9 13 13 C 1.32489 * 122.22872 * 0.53265 * 12 11 10 14 14 N 1.39466 * 119.64641 * 179.74699 * 13 12 11 15 15 C 1.34774 * 119.99858 * 4.98699 * 14 13 12 16 16 O 1.21577 * 120.00318 * 5.19984 * 15 14 13 17 17 N 1.34779 * 119.99784 * 185.19487 * 15 14 13 18 18 C 1.46922 * 120.64407 * 354.42658 * 17 15 14 19 19 C 1.53191 * 108.77639 * 233.63129 * 18 17 15 20 20 C 1.53030 * 109.34068 * 305.37721 * 19 18 17 21 21 C 1.53026 * 109.56761 * 61.27875 * 20 19 18 22 22 C 1.46935 * 120.64282 * 174.40737 * 17 15 14 23 23 O 1.43144 * 109.41900 * 301.28024 * 20 19 18 24 24 C 1.43084 * 113.68650 * 181.47786 * 23 20 19 25 25 C 1.53262 * 109.04102 * 57.86708 * 24 23 20 26 26 C 1.53268 * 108.81787 * 305.39364 * 25 24 23 27 27 O 1.42962 * 109.39449 * 181.24700 * 20 19 18 28 28 C 1.38639 * 120.70614 * 359.47036 * 13 12 11 29 29 H 0.97001 * 119.99599 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43293 * 359.97438 * 10 9 7 31 31 H 1.07996 * 119.37237 * 180.02562 * 11 10 9 32 32 H 0.96996 * 119.99798 * 184.98744 * 14 13 12 33 33 H 1.08997 * 109.58623 * 113.84765 * 18 17 15 34 34 H 1.09006 * 109.70710 * 353.48541 * 18 17 15 35 35 H 1.08995 * 109.49455 * 185.41017 * 19 18 17 36 36 H 1.09004 * 109.51068 * 65.34628 * 19 18 17 37 37 H 1.09002 * 109.49437 * 58.68689 * 21 20 19 38 38 H 1.08999 * 109.49399 * 178.77158 * 21 20 19 39 39 H 1.09005 * 109.58227 * 246.16384 * 22 17 15 40 40 H 1.08998 * 109.58713 * 6.57848 * 22 17 15 41 41 H 1.08991 * 109.56159 * 297.96905 * 24 23 20 42 42 H 1.09004 * 109.55695 * 177.75106 * 24 23 20 43 43 H 1.08992 * 109.58313 * 65.19041 * 25 24 23 44 44 H 1.09003 * 109.57892 * 185.46623 * 25 24 23 45 45 H 1.09003 * 109.55941 * 174.40462 * 26 25 24 46 46 H 1.09004 * 109.56401 * 294.62238 * 26 25 24 47 47 H 1.07996 * 120.66790 * 180.22873 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6962 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0851 -1.2143 0.0714 9 6 1.3029 -2.4367 -0.0956 10 6 1.8501 -3.5388 -0.7875 11 6 1.1368 -4.7016 -0.8559 12 7 -0.0485 -4.8132 -0.2839 13 6 -0.6129 -3.8109 0.3735 14 7 -1.8694 -3.9865 0.9526 15 6 -2.4588 -5.1983 0.9291 16 8 -1.8573 -6.1585 0.4884 17 7 -3.7152 -5.3456 1.3943 18 6 -4.4107 -4.2245 2.0407 19 6 -4.9120 -4.6813 3.4144 20 6 -5.7668 -5.9398 3.2491 21 6 -4.9173 -7.0609 2.6464 22 6 -4.4160 -6.6306 1.2643 23 8 -6.8681 -5.6563 2.3797 24 6 -7.7495 -6.7669 2.1877 25 6 -8.2856 -7.2211 3.5497 26 6 -7.0996 -7.5073 4.4774 27 8 -6.2591 -6.3505 4.5269 28 6 0.0347 -2.5913 0.4968 29 1 -0.4849 0.8401 0.0004 30 1 2.8196 -3.4632 -1.2572 31 1 1.5518 -5.5473 -1.3839 32 1 -2.3191 -3.2365 1.3722 33 1 -5.2571 -3.9168 1.4268 34 1 -3.7239 -3.3869 2.1625 35 1 -5.5121 -3.8904 3.8641 36 1 -4.0602 -4.9021 4.0578 37 1 -4.0654 -7.2612 3.2962 38 1 -5.5214 -7.9630 2.5495 39 1 -5.2628 -6.5180 0.5872 40 1 -3.7306 -7.3827 0.8737 41 1 -7.2066 -7.5867 1.7175 42 1 -8.5811 -6.4668 1.5500 43 1 -8.9040 -6.4335 3.9800 44 1 -8.8807 -8.1258 3.4249 45 1 -7.4660 -7.7352 5.4784 46 1 -6.5330 -8.3559 4.0942 47 1 -0.4244 -1.7759 1.0360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:27 Heat of formation + Delta-G solvation = -85.407667 kcal Electronic energy + Delta-G solvation = -31150.557343 eV Core-core repulsion = 26912.173914 eV Total energy + Delta-G solvation = -4238.383429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.08988 -41.21297 -39.89408 -37.63474 -36.64773 -36.12307 -35.55972 -33.93425 -32.54698 -32.30155 -31.57126 -30.14986 -27.88108 -26.92721 -26.00812 -24.93930 -23.81192 -23.40184 -22.70000 -21.19169 -20.39945 -19.67858 -19.29425 -18.39342 -17.69065 -17.38210 -17.17867 -16.72786 -16.64172 -16.22389 -16.02229 -15.95832 -15.86311 -15.62382 -15.12877 -14.90787 -14.66665 -14.39014 -14.31453 -14.27163 -14.22327 -13.65082 -13.50301 -13.20364 -13.14141 -12.84915 -12.66760 -12.53518 -12.41182 -12.18182 -12.09802 -11.98799 -11.88076 -11.79706 -11.48799 -11.22500 -11.16439 -10.97880 -10.41913 -9.84538 -9.74704 -9.64202 -8.83646 -8.49995 -6.56976 0.82126 1.03567 1.43194 1.49377 1.53999 1.58915 2.19377 2.24198 2.55772 2.61225 2.77588 2.89228 3.44405 3.55596 3.73105 3.80713 3.84310 3.88528 4.06077 4.12075 4.20442 4.24044 4.32772 4.34315 4.45885 4.50481 4.63084 4.67663 4.71778 4.79118 4.82701 4.85581 4.87075 4.91870 4.93131 5.09764 5.11743 5.17983 5.29303 5.46537 5.50403 5.66009 5.77325 5.87625 6.01303 6.20839 6.25064 6.57026 6.77772 6.83409 6.89257 7.53496 7.86529 8.36811 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.002425 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.211819 B =11542.346130 C =12527.830587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.488 4.488 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.286 4.286 11 C 0.109 3.891 12 N -0.573 5.573 13 C 0.349 3.651 14 N -0.661 5.661 15 C 0.695 3.305 16 O -0.577 6.577 17 N -0.625 5.625 18 C 0.117 3.883 19 C -0.107 4.107 20 C 0.279 3.721 21 C -0.175 4.175 22 C 0.140 3.860 23 O -0.393 6.393 24 C 0.042 3.958 25 C -0.184 4.184 26 C 0.043 3.957 27 O -0.402 6.402 28 C -0.249 4.249 29 H 0.289 0.711 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.417 0.583 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.381 -8.350 8.285 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.310 4.310 11 C -0.044 4.044 12 N -0.293 5.293 13 C 0.121 3.879 14 N -0.312 5.312 15 C 0.396 3.604 16 O -0.452 6.452 17 N -0.364 5.364 18 C -0.006 4.006 19 C -0.145 4.145 20 C 0.202 3.798 21 C -0.214 4.214 22 C 0.018 3.982 23 O -0.314 6.314 24 C -0.034 4.034 25 C -0.222 4.222 26 C -0.033 4.033 27 O -0.324 6.324 28 C -0.274 4.274 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.167 0.833 32 H 0.257 0.743 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.129 0.871 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.083 0.917 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.664 -9.468 7.999 22.405 hybrid contribution 0.580 1.347 0.060 1.468 sum -18.084 -8.121 8.060 21.400 Atomic orbital electron populations 1.69754 1.08705 1.30488 1.36481 1.26791 0.95825 1.04367 0.91103 0.85100 0.78506 0.75232 0.79934 1.18768 1.19207 1.18311 1.19765 0.95131 0.90503 1.46579 0.89927 1.18051 0.91644 0.92860 0.87008 1.21966 1.03605 0.96432 1.08970 1.21949 0.89889 0.96695 0.95857 1.67303 1.13906 1.31418 1.16658 1.18232 0.85671 0.90670 0.93305 1.42660 1.17615 1.11406 1.59502 1.16114 0.81680 0.83244 0.79317 1.90947 1.63730 1.38803 1.51731 1.47383 1.12301 1.14268 1.62489 1.21710 0.97605 0.88190 0.93073 1.21745 0.98958 0.96260 0.97548 1.22499 0.85119 0.93932 0.78258 1.22865 1.01014 0.99931 0.97573 1.21329 0.96145 0.84257 0.96505 1.88174 1.38589 1.38379 1.66278 1.22915 0.93769 0.89602 0.97137 1.22736 0.98926 1.04173 0.96381 1.22918 0.90747 0.87297 1.02321 1.88124 1.66857 1.47497 1.29873 1.21730 0.99949 0.95906 1.09864 0.90056 0.86349 0.83311 0.74314 0.89167 0.89226 0.87707 0.89732 0.90616 0.88001 0.90071 0.90310 0.91738 0.87055 0.90716 0.87288 0.87061 0.91736 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.96 10.66 21.84 0.23 -40.73 16 2 C 0.03 1.63 5.44 85.29 0.46 2.10 16 3 Si 0.99 36.67 29.56 68.60 2.03 38.70 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 7 C -0.49 -25.48 9.11 23.52 0.21 -25.27 16 8 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 9 C 0.11 6.09 5.57 -21.11 -0.12 5.97 16 10 C -0.29 -14.32 9.85 22.60 0.22 -14.10 16 11 C 0.11 5.37 11.10 84.27 0.94 6.31 16 12 N -0.57 -30.37 7.89 -194.27 -1.53 -31.90 16 13 C 0.35 17.60 7.41 132.76 0.98 18.58 16 14 N -0.66 -27.34 5.30 -322.37 -1.71 -29.05 16 15 C 0.70 28.14 8.25 179.05 1.48 29.62 16 16 O -0.58 -28.34 14.05 -3.96 -0.06 -28.39 16 17 N -0.63 -18.56 2.97 -836.91 -2.49 -21.05 16 18 C 0.12 2.67 6.14 86.36 0.53 3.20 16 19 C -0.11 -2.19 5.48 30.67 0.17 -2.02 16 20 C 0.28 5.61 1.07 30.61 0.03 5.65 16 21 C -0.18 -3.53 4.38 30.67 0.13 -3.40 16 22 C 0.14 3.54 6.20 86.36 0.54 4.08 16 23 O -0.39 -7.65 9.10 -126.24 -1.15 -8.80 16 24 C 0.04 0.54 6.59 72.07 0.47 1.02 16 25 C -0.18 -1.94 6.36 30.77 0.20 -1.74 16 26 C 0.04 0.56 6.59 72.07 0.48 1.04 16 27 O -0.40 -8.15 10.35 -126.24 -1.31 -9.46 16 28 C -0.25 -13.03 8.61 23.00 0.20 -12.83 16 29 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 30 H 0.12 5.37 8.06 -2.91 -0.02 5.34 16 31 H 0.15 6.29 8.06 -2.91 -0.02 6.26 16 32 H 0.42 14.36 6.19 -92.71 -0.57 13.78 16 33 H 0.09 1.92 7.81 -2.39 -0.02 1.90 16 34 H 0.09 1.95 5.66 -2.38 -0.01 1.94 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 1.57 5.13 -2.39 -0.01 1.56 16 39 H 0.08 1.82 7.81 -2.38 -0.02 1.80 16 40 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 41 H 0.06 0.73 6.56 -2.39 -0.02 0.72 16 42 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 0.73 6.51 -2.38 -0.02 0.72 16 47 H 0.13 6.82 6.23 -2.91 -0.02 6.80 16 Total: -1.00 -71.54 367.51 1.39 -70.15 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: 0.44 Total: 42.32 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.92 Total: 18.21 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.50 Total: -122.72 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -2.51 Total: -46.65 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -71.54 1.39 -70.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.257 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds